Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p031619 Quercus lobata HOM05D004165 ORTHO05D005063 0.0e+00 4060.0 2065 100.0
Cfa002775 Carpinus fangiana HOM05D004165 ORTHO05D005063 0.0e+00 3331.6 2019 84.8
CiPaw.03G132500 Carya illinoinensis HOM05D004165 ORTHO05D005063 0.0e+00 3299.2 2019 83.6
Dinv21242 Davidia involucrata HOM05D004165 ORTHO05D005063 0.0e+00 3065.8 2029 78.3
Prupe.6G168600 Prunus persica HOM05D004165 ORTHO05D005063 0.0e+00 3033.8 2019 77.4
RcHm_v2.0_Chr2g0117761 Rosa chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3013.8 2020 76.8
Atru.chr4.460 Acer truncatum HOM05D004165 ORTHO05D005063 0.0e+00 3006.5 2019 77.0
FAN26G2965 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 2978.7 2020 75.8
FvH4_1g23050 Fragaria vesca HOM05D004165 ORTHO05D005063 0.0e+00 2976.8 2020 75.8
MD15G1330600 Malus domestica HOM05D004165 ORTHO05D005063 0.0e+00 2976.8 2019 75.9
FAN28G2110 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 2966.8 2021 75.5
FAN19G2841 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 2964.9 2020 75.5
FAN23G0468 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 2961.4 2020 75.5
Thecc.01G115900 Theobroma cacao HOM05D004165 ORTHO05D005063 0.0e+00 2957.9 2020 75.3
TAR628G1404 Trochodendron aralioides HOM05D004165 ORTHO05D005063 0.0e+00 2957.5 2033 75.9
Potri.005G086100 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 2956.4 2021 75.8
CSS0013219 Camellia sinensis var. sinensis HOM05D004165 ORTHO05D005063 0.0e+00 2933.3 2034 75.9
Sabra05G0071000 Salix brachista HOM05D004165 ORTHO05D005063 0.0e+00 2932.5 2045 74.3
Gohir.D12G093100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 2922.1 2019 74.8
Potri.007G078650 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 2919.0 2022 74.3
Gorai.008G100800 Gossypium raimondii HOM05D004165 ORTHO05D005063 0.0e+00 2917.9 2019 74.7
Gohir.A12G083100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 2908.2 2019 74.7
Manes.12G144600 Manihot esculenta HOM05D004165 ORTHO05D005063 0.0e+00 2897.1 2020 74.1
Lj4C863G6 Lonicera japonica HOM05D004165 ORTHO05D005063 0.0e+00 2875.9 2032 74.0
Glyma.05G185300 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 2871.6 2021 73.9
Lj4g0014922 Lotus japonicus HOM05D004165 ORTHO05D005063 0.0e+00 2870.9 2019 73.7
Glyma.08G143200 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 2865.1 2021 73.5
Ca_17683_v3 Cicer arietinum L. HOM05D004165 ORTHO05D005063 0.0e+00 2863.9 2022 73.2
Lalb_Chr13g0296271 Lupinus albus HOM05D004165 ORTHO05D005063 0.0e+00 2850.8 2019 73.3
Phvul.002G266300 Phaseolus vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 2844.7 2022 73.2
arahy.Tifrunner.gnm1.ann1.F6TX6D Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 2837.4 2019 72.9
CANSAT01G1143 Cannabis sativa HOM05D004165 ORTHO05D005063 0.0e+00 2837.0 2019 73.4
arahy.Tifrunner.gnm1.ann1.KAY7L7 Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 2834.7 2019 72.8
MELO3C007461.2 Cucumis melo HOM05D004165 ORTHO05D005063 0.0e+00 2817.7 2021 72.0
Medtr8g092100 Medicago truncatula HOM05D004165 ORTHO05D005063 0.0e+00 2811.6 2019 72.1
CsaV3_6G042210 Cucumis sativus L. HOM05D004165 ORTHO05D005063 0.0e+00 2798.8 2021 71.4
Nn5g28841 Nelumbo nucifera HOM05D004165 ORTHO05D005063 0.0e+00 2791.1 2040 72.3
PGR004G2408 Punica granatum HOM05D004165 ORTHO05D005063 0.0e+00 2772.7 2026 71.2
TPR.G2248 Trifolium pratense HOM05D004165 ORTHO05D005063 0.0e+00 2757.2 2019 71.0
Actinidia28449 Actinidia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 2753.8 2029 72.0
Sed0015867 Sechium edule HOM05D004165 ORTHO05D005063 0.0e+00 2743.8 2022 70.7
ClCG01G015940 Citrullus lanatus HOM05D004165 ORTHO05D005063 0.0e+00 2734.5 2020 70.7
vmacro12886 Vaccinium macrocarpon HOM05D004165 ORTHO05D005063 0.0e+00 2733.0 2126 69.0
Cc07_g16560 Coffea canephora HOM05D004165 ORTHO05D005063 0.0e+00 2726.0 2070 69.1
PSO210G1143 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 2683.3 2041 68.8
PSO170G0015 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 2674.0 2040 68.6
DCAR_016674 Daucus carota HOM05D004165 ORTHO05D005063 0.0e+00 2664.8 2029 68.8
Aqoxy5G02023 Aquilegia oxysepala HOM05D004165 ORTHO05D005063 0.0e+00 2655.6 2037 68.1
Duzib147G0774 Durio zibethinus HOM05D004165 ORTHO05D005063 0.0e+00 2655.2 1802 76.2
ECA233G2130 Erigeron canadensis HOM05D004165 ORTHO05D005063 0.0e+00 2617.4 2030 68.1
A01p00380 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 2603.2 2021 67.1
BraA01t00046Z Brassica rapa HOM05D004165 ORTHO05D005063 0.0e+00 2603.2 2021 67.1
BolC1t00056H Brassica oleracea HOM05D004165 ORTHO05D005063 0.0e+00 2601.2 2020 66.9
C01p00530 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 2600.9 2020 66.9
Migut.H02450 Erythranthe guttata HOM05D004165 ORTHO05D005063 0.0e+00 2593.9 2029 68.0
CARHR247290 Cardamine hirsuta HOM05D004165 ORTHO05D005063 0.0e+00 2592.0 2020 67.1
AT4G39420 Arabidopsis thaliana HOM05D004165 ORTHO05D005063 0.0e+00 2587.8 2020 67.2
HanXRQChr08g0218061 Helianthus annuus HOM05D004165 ORTHO05D005063 0.0e+00 2586.2 2033 67.4
Thhalv10024179m.g Eutrema salsugineum HOM05D004165 ORTHO05D005063 0.0e+00 2585.8 2020 67.0
Carub.0007s0134 Capsella rubella HOM05D004165 ORTHO05D005063 0.0e+00 2580.8 2021 66.8
THA.LOC104804480 Tarenaya hassleriana HOM05D004165 ORTHO05D005063 0.0e+00 2577.7 2028 67.3
AL7G11450 Arabidopsis lyrata HOM05D004165 ORTHO05D005063 0.0e+00 2574.3 2021 66.8
MSTRG.23305 Avicennia marina HOM05D004165 ORTHO05D005063 0.0e+00 2573.9 2031 67.4
Aa31LG6G15850 Aethionema arabicum HOM05D004165 ORTHO05D005063 0.0e+00 2561.2 2036 66.5
Sopen04g022920 Solanum pennellii HOM05D004165 ORTHO05D005063 0.0e+00 2560.8 2025 66.4
Solyc04g051570.4 Solanum lycopersicum HOM05D004165 ORTHO05D005063 0.0e+00 2550.4 2025 66.3
SalBow6G1439 Salvia bowleyana HOM05D004165 ORTHO05D005063 0.0e+00 2525.7 2048 66.2
Lsat_1_v5_gn_9_57180 Lactuca sativa HOM05D004165 ORTHO05D005063 0.0e+00 2524.2 2032 66.7
Sc03g0004750 Simmondsia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 2520.0 2029 66.0
Sp7g36440 Schrenkiella parvula HOM05D004165 ORTHO05D005063 0.0e+00 2511.1 2020 65.4
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 0.0e+00 2488.0 2041 64.7
EL10Ac6g15255 Beta vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 2439.1 2034 63.8
GSVIVG01022255001 Vitis vinifera HOM05D004165 ORTHO05D005063 0.0e+00 2429.1 1650 77.3
Psat7g050200 Pisum sativum HOM05D004165 ORTHO05D005063 0.0e+00 2407.1 1775 70.3
Ciclev10024679m.g Citrus clementina HOM05D004165 ORTHO05D005063 0.0e+00 2290.0 2019 62.2
Eucgr.I00310 Eucalyptus grandis HOM05D004165 ORTHO05D005063 0.0e+00 2269.6 1744 68.2
Oeu054941.1 Olea europaea HOM05D004165 ORTHO05D005063 0.0e+00 2238.4 1851 64.9
HPP92_013330 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 2232.6 2034 59.1
CDE07G1357 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 0.0e+00 2205.6 2041 58.4
SGA_v2.0_scaffold2G01283 Striga asiatica HOM05D004165 ORTHO05D005063 0.0e+00 2148.2 1783 65.1
Zm00001eb062420 Zea mays HOM05D004165 ORTHO05D005063 0.0e+00 2121.3 2040 56.6
Nitab4.5_0009050g0020 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 2088.5 1509 72.8
Peaxi162Scf00702g00610 Petunia axillaris HOM05D004165 ORTHO05D005063 0.0e+00 2048.5 1469 73.0
Rhsim10G0147800 Rhododendron simsii HOM05D004165 ORTHO05D005063 0.0e+00 2032.3 1448 74.4
unitig_899.g14615 Utricularia gibba HOM05D004165 ORTHO05D005063 0.0e+00 1987.2 2048 54.9
Nitab4.5_0000184g0120 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 1922.1 1799 59.0
Mapoly0066s0021 Marchantia polymorpha HOM05D004165 ORTHO05D005063 0.0e+00 1758.4 2091 48.8
Haze_25067 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1715.7 1003 87.1
Hma1.2p1_0134F.1_g061540 Hydrangea macrophylla HOM05D004165 ORTHO05D005063 0.0e+00 1697.9 1430 65.7
Haze_25068 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1626.3 1020 82.5
Pp3c3_30110 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1587.4 2109 45.5
Pp3c10_13600 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1568.1 2132 44.3
SEGI_01323 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 0.0e+00 1520.8 1777 50.1
Pp3c7_14700 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1457.2 2088 42.6
AUR62003622 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1282.3 1190 57.8
HPP92_013327 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1271.1 1019 66.1
SMO116G0345 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 0.0e+00 1251.1 1533 49.0
AUR62017931 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1250.3 1190 57.1
AUR62017932 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1199.5 838 73.3
AUR62003623 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1133.6 835 71.0
TPR.G2291 Trifolium pratense HOM05D004165 ORTHO05D005063 0.0e+00 1102.4 1135 56.7
VMungo0251G1264 Vigna mungo HOM05D004165 ORTHO05D005063 0.0e+00 1098.2 886 65.0
SEGI_35182 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 0.0e+00 1088.6 951 62.3
SEGI_21320 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 3.4e-308 1062.8 851 64.6
CBR_g5608 Chara braunii HOM05D004165 ORTHO05D005063 5.0e-259 899.4 2712 28.4
HPP92_013326 Vanilla planifolia HOM05D004165 ORTHO05D005063 2.8e-249 867.1 937 51.4
Cpa.g.sc72.8 Carica papaya HOM05D004165 ORTHO05D005063 6.9e-208 729.6 411 90.3
PGSC0003DMG402020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 3.3e-202 710.7 440 81.4
COL.COLO4_22364 Corchorus olitorius HOM05D004165 ORTHO05D005063 3.8e-190 670.6 467 70.2
Nitab4.5_0009050g0010 Nicotiana tabacum HOM05D004165 ORTHO05D005063 1.3e-150 539.3 454 58.6
GSVIVG01022256001 Vitis vinifera HOM05D004165 ORTHO05D005063 5.6e-149 533.9 353 73.4
Peaxi162Scf00702g00611 Petunia axillaris HOM05D004165 ORTHO05D005063 6.4e-145 520.4 452 59.3
AagrBONN_evm.TU.Sc2ySwM_344.5499 Anthoceros agrestis HOM05D004165 ORTHO05D005063 2.0e-143 515.4 609 48.1
Cpa.g.sc72.12 Carica papaya HOM05D004165 ORTHO05D005063 9.2e-128 463.4 532 51.9
Os01g0182900 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 1.2e-127 463.0 326 70.9
Psat4g052480 Pisum sativum HOM05D004165 ORTHO05D005063 5.2e-123 447.6 555 49.2
CAN.G1044.6 Capsicum annuum HOM05D004165 ORTHO05D005063 2.4e-120 438.7 269 80.3
COL.COLO4_22363 Corchorus olitorius HOM05D004165 ORTHO05D005063 5.4e-120 437.6 249 86.3
Cpa.g.sc72.10 Carica papaya HOM05D004165 ORTHO05D005063 1.1e-112 413.3 301 68.4
Psat4g052520 Pisum sativum HOM05D004165 ORTHO05D005063 6.0e-111 407.5 337 65.0
Cpa.g.sc72.14 Carica papaya HOM05D004165 ORTHO05D005063 6.7e-102 377.5 247 72.5
SHI11786 Sapria himalayana HOM05D004165 ORTHO05D005063 4.9e-97 361.3 465 43.9
Psat0s5282g0080 Pisum sativum HOM05D004165 ORTHO05D005063 3.2e-96 358.6 217 84.8
SHI11797 Sapria himalayana HOM05D004165 ORTHO05D005063 2.0e-90 339.3 243 67.9
SEGI_28584 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 7.9e-87 327.4 309 58.3
SHI11791 Sapria himalayana HOM05D004165 ORTHO05D005063 9.1e-75 287.3 299 55.2
MBI01_g36155_MAGBIO Magnolia biondii HOM05D004165 ORTHO05D005063 1.9e-72 279.6 217 60.8
SHI11792 Sapria himalayana HOM05D004165 ORTHO05D005063 2.1e-71 276.2 326 48.8
Cpa.g.sc72.11 Carica papaya HOM05D004165 ORTHO05D005063 6.1e-63 248.1 155 78.1
SMO116G0288 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 1.0e-54 220.7 403 37.0
SHI11788 Sapria himalayana HOM05D004165 ORTHO05D005063 1.5e-48 200.3 218 51.8
SHI11794 Sapria himalayana HOM05D004165 ORTHO05D005063 9.8e-37 161.0 118 69.5
TPR.G2323 Trifolium pratense HOM05D004165 ORTHO05D005063 9.8e-37 161.0 150 49.3
Dinv05989 Davidia involucrata HOM05D004165 ORTHO05D005063 2.6e-29 136.3 82 81.7
Psat0ss6263g0080 Pisum sativum HOM05D004165 ORTHO05D005166 2.2e-28 133.3 147 54.4
PGSC0003DMG401020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 3.7e-28 132.5 111 55.9
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 6.4e-28 131.7 117 64.1
Psat5g190880 Pisum sativum HOM05D004165 ORTHO05D326560 8.3e-28 131.3 97 69.1
Psat0ss6263g0240 Pisum sativum HOM05D004165 ORTHO05D005166 4.1e-27 129.0 136 55.1
SHI11789 Sapria himalayana HOM05D004165 ORTHO05D005063 1.9e-24 120.2 117 58.1
TPR.G35587 Trifolium pratense HOM05D004165 ORTHO05D005063 4.7e-23 115.5 70 84.3
Dinv05988 Davidia involucrata HOM05D004165 ORTHO05D005063 6.2e-23 115.2 86 66.3
PGSC0003DMG400026832 Solanum tuberosum HOM05D004165 ORTHO05D005063 5.4e-19 102.1 97 47.4
Sabra16G0108800 Salix brachista HOM05D000241 ORTHO05D001001 1.1e-16 94.4 60 70.0
SHI11793 Sapria himalayana HOM05D004165 ORTHO05D005063 6.0e-10 72.0 45 80.0
Nitab4.5_0000002g0310 Nicotiana tabacum HOM05D010190 ORTHO05D004271 1.0e-09 71.2 63 57.1
Solyc03g150125.1 Solanum lycopersicum HOM05D010190 ORTHO05D004271 5.2e-06 58.9 39 66.7


User provided reference genes

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