Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p031121 Quercus lobata HOM05D001595 ORTHO05D001573 1.4e-50 202.6 102 100.0
QL06p031114 Quercus lobata HOM05D001595 ORTHO05D001573 5.4e-13 77.8 115 40.9
QL06p031123 Quercus lobata HOM05D001595 ORTHO05D001573 3.5e-12 75.1 115 37.4
Thecc.01G118600 Theobroma cacao HOM05D001595 ORTHO05D001573 3.5e-12 75.1 115 38.3
QL11p027894 Quercus lobata HOM05D001595 ORTHO05D001573 7.8e-12 73.9 118 34.7
Duzib187G0218 Durio zibethinus HOM05D001595 ORTHO05D001573 1.0e-11 73.6 121 38.0
GSVIVG01016787001 Vitis vinifera HOM05D001595 ORTHO05D001573 3.0e-11 72.0 104 36.5
Cfa002802 Carpinus fangiana HOM05D001595 ORTHO05D034160 6.6e-11 70.9 120 36.7
CiPaw.04G087500 Carya illinoinensis HOM05D001595 ORTHO05D001573 1.5e-10 69.7 98 36.7
CiPaw.04G087600 Carya illinoinensis HOM05D001595 ORTHO05D001573 3.3e-10 68.6 110 36.4
Atru.chr4.617 Acer truncatum HOM05D001595 ORTHO05D001573 4.3e-10 68.2 109 36.7
Haze_06479 Corylus avellana HOM05D001595 ORTHO05D001573 4.3e-10 68.2 109 41.3
Gohir.D10G105500 Gossypium hirsutum HOM05D001595 ORTHO05D001573 9.5e-10 67.0 118 35.6
Gorai.011G115100 Gossypium raimondii HOM05D001595 ORTHO05D001573 9.5e-10 67.0 118 35.6
Atru.chr6.3152 Acer truncatum HOM05D001595 ORTHO05D001573 1.2e-09 66.6 109 36.7
Dinv02717 Davidia involucrata HOM05D001595 ORTHO05D001573 1.6e-09 66.2 105 34.3
FAN12G2526 Fragaria x ananassa HOM05D001595 ORTHO05D001573 1.6e-09 66.2 43 55.8
MD15G1340900 Malus domestica HOM05D001595 ORTHO05D001573 2.1e-09 65.9 43 60.5
FvH4_4g25660 Fragaria vesca HOM05D001595 ORTHO05D001573 3.6e-09 65.1 43 55.8
Gohir.A10G082928 Gossypium hirsutum HOM05D001595 ORTHO05D001573 4.7e-09 64.7 118 34.7
Prupe.6G161600 Prunus persica HOM05D001595 ORTHO05D001573 4.7e-09 64.7 57 49.1
RcHm_v2.0_Chr2g0119721 Rosa chinensis HOM05D001595 ORTHO05D001573 4.7e-09 64.7 56 44.6
RcHm_v2.0_Chr2g0119751 Rosa chinensis HOM05D001595 ORTHO05D001573 4.7e-09 64.7 56 44.6
FAN23G0515 Fragaria x ananassa HOM05D001595 ORTHO05D001573 6.2e-09 64.3 59 42.4
FAN26G2637 Fragaria x ananassa HOM05D001595 ORTHO05D001573 6.2e-09 64.3 59 42.4
QL10p018398 Quercus lobata HOM05D001595 ORTHO05D001573 6.2e-09 64.3 43 55.8
MD01G1001000 Malus domestica HOM05D001595 ORTHO05D001573 1.1e-08 63.5 43 55.8
Potri.001G306600 Populus trichocarpa HOM05D001595 ORTHO05D001573 1.1e-08 63.5 46 52.2
TAR381G0522 Trochodendron aralioides HOM05D001595 ORTHO05D001573 1.1e-08 63.5 105 31.4
FvH4_1g23830 Fragaria vesca HOM05D001595 ORTHO05D001573 1.4e-08 63.2 59 42.4
TAR381G1172 Trochodendron aralioides HOM05D001595 ORTHO05D001573 1.4e-08 63.2 105 31.4
Atru.chr4.618 Acer truncatum HOM05D001595 ORTHO05D001573 1.8e-08 62.8 51 49.0
Manes.12G150000 Manihot esculenta HOM05D001595 ORTHO05D001573 1.8e-08 62.8 123 32.5
Aqoxy2G00733 Aquilegia oxysepala HOM05D001595 ORTHO05D001573 2.3e-08 62.4 46 50.0
FAN07G0269 Fragaria x ananassa HOM05D001595 ORTHO05D001573 2.3e-08 62.4 59 40.7
FAN17G2212 Fragaria x ananassa HOM05D001595 ORTHO05D001573 2.3e-08 62.4 59 42.4
GSVIVG01022286001 Vitis vinifera HOM05D001595 ORTHO05D001573 2.3e-08 62.4 125 32.0
Nn5g28770 Nelumbo nucifera HOM05D001595 ORTHO05D001573 3.1e-08 62.0 44 52.3
QL10p018382 Quercus lobata HOM05D001595 ORTHO05D001573 3.1e-08 62.0 42 54.8
TWI79G1743 Tripterygium wilfordii HOM05D001595 ORTHO05D001573 3.1e-08 62.0 118 32.2
PSO675G1185 Papaver somniferum HOM05D001595 ORTHO05D001573 4.0e-08 61.6 50 50.0
TAR374G1635 Trochodendron aralioides HOM05D001595 ORTHO05D001573 4.0e-08 61.6 104 33.7
TAR628G0448 Trochodendron aralioides HOM05D001595 ORTHO05D001573 4.0e-08 61.6 104 33.7
Manes.12G150100 Manihot esculenta HOM05D001595 ORTHO05D001573 5.2e-08 61.2 54 44.4
PSO478G1785 Papaver somniferum HOM05D001595 ORTHO05D001573 5.2e-08 61.2 133 30.8
PSO478G4628 Papaver somniferum HOM05D001595 ORTHO05D001573 5.2e-08 61.2 53 45.3
PGR102G0122 Punica granatum HOM05D001595 ORTHO05D001573 5.2e-08 61.2 57 45.6
Sabra16G0192800 Salix brachista HOM05D001595 ORTHO05D001573 5.2e-08 61.2 46 47.8
Lalb_Chr08g0238711 Lupinus albus HOM05D001595 ORTHO05D001573 6.8e-08 60.8 62 43.5
TAR628G1528 Trochodendron aralioides HOM05D001595 ORTHO05D001573 6.8e-08 60.8 43 55.8
arahy.Tifrunner.gnm1.ann1.D1YDE1 Arachis hypogaea HOM05D001595 ORTHO05D001573 8.9e-08 60.5 43 51.2
PSO782G3363 Papaver somniferum HOM05D001595 ORTHO05D001573 8.9e-08 60.5 52 46.2
Aqoxy4G02324 Aquilegia oxysepala HOM05D001595 ORTHO05D001573 1.2e-07 60.1 54 46.3
MBI17_g24511_MAGBIO Magnolia biondii HOM05D001595 ORTHO05D001573 1.2e-07 60.1 49 51.0
MBI17_g24664_MAGBIO Magnolia biondii HOM05D001595 ORTHO05D001573 1.2e-07 60.1 49 51.0
Aqoxy2G02018 Aquilegia oxysepala HOM05D001595 ORTHO05D001573 1.5e-07 59.7 44 47.7
CANSAT01G0338 Cannabis sativa HOM05D001595 ORTHO05D001573 1.5e-07 59.7 45 46.7
Lj1g0020547 Lotus japonicus HOM05D001595 ORTHO05D001573 1.5e-07 59.7 59 42.4
TWI75G1603 Tripterygium wilfordii HOM05D001595 ORTHO05D001573 1.5e-07 59.7 127 29.9
AT2G21740 Arabidopsis thaliana HOM05D001595 ORTHO05D001573 2.0e-07 59.3 57 45.6
PSO675G8159 Papaver somniferum HOM05D001595 ORTHO05D001573 2.0e-07 59.3 66 39.4
Nn3g16635 Nelumbo nucifera HOM05D001595 ORTHO05D001573 2.6e-07 58.9 58 41.4
Atru.chr8.1692 Acer truncatum HOM05D001595 ORTHO05D001573 3.4e-07 58.5 59 37.3
arahy.Tifrunner.gnm1.ann1.5BVN2C Arachis hypogaea HOM05D001595 ORTHO05D001573 3.4e-07 58.5 110 35.5
MBI16_g15525_MAGBIO Magnolia biondii HOM05D001595 ORTHO05D001573 3.4e-07 58.5 49 51.0
Nn1g00645 Nelumbo nucifera HOM05D001595 ORTHO05D001573 3.4e-07 58.5 58 41.4
PSO170G3144 Papaver somniferum HOM05D001595 ORTHO05D001573 3.4e-07 58.5 44 47.7
PSO170G4482 Papaver somniferum HOM05D001595 ORTHO05D001573 3.4e-07 58.5 44 47.7
PSO210G6253 Papaver somniferum HOM05D001595 ORTHO05D001573 3.4e-07 58.5 44 47.7
CSS0038885 Camellia sinensis var. sinensis HOM05D001595 ORTHO05D001573 4.4e-07 58.2 102 33.3
SHI02936 Sapria himalayana HOM05D001595 ORTHO05D001573 4.4e-07 58.2 60 35.0
Cfa002801 Carpinus fangiana HOM05D001595 ORTHO05D001573 5.8e-07 57.8 44 59.1
SalBow7G4086 Salvia bowleyana HOM05D001595 ORTHO05D001573 5.8e-07 57.8 58 44.8
CAN.G476.14 Capsicum annuum HOM05D001595 ORTHO05D001573 7.5e-07 57.4 50 44.0
AUR62019334 Chenopodium quinoa HOM05D001595 ORTHO05D001573 7.5e-07 57.4 45 46.7
HanXRQChr02g0038131 Helianthus annuus HOM05D001595 ORTHO05D001573 7.5e-07 57.4 56 42.9
Aa31LG6G15940 Aethionema arabicum HOM05D001595 ORTHO05D001573 9.8e-07 57.0 56 41.1
ATR0584G162 Amborella trichopoda HOM05D001595 ORTHO05D001573 9.8e-07 57.0 43 48.8
AL4G11010 Arabidopsis lyrata HOM05D001595 ORTHO05D001573 9.8e-07 57.0 57 43.9
BcaNung02340 Brassica carinata HOM05D001595 ORTHO05D001573 9.8e-07 57.0 56 41.1
C07p63220 Brassica napus HOM05D001595 ORTHO05D001573 9.8e-07 57.0 56 41.1
MELO3C004901.2 Cucumis melo HOM05D001595 ORTHO05D001573 9.8e-07 57.0 44 47.7
THA.LOC104804141 Tarenaya hassleriana HOM05D001595 ORTHO05D001573 9.8e-07 57.0 42 50.0
C01p00450 Brassica napus HOM05D001595 ORTHO05D001573 1.3e-06 56.6 42 47.6
Lj4P858T30 Lonicera japonica HOM05D001595 ORTHO05D001573 1.3e-06 56.6 60 40.0
Nitab4.5_0001187g0010 Nicotiana tabacum HOM05D001595 ORTHO05D001573 1.3e-06 56.6 44 50.0
Nitab4.5_0001344g0030 Nicotiana tabacum HOM05D001595 ORTHO05D001573 1.3e-06 56.6 44 50.0
Nitab4.5_0002138g0040 Nicotiana tabacum HOM05D001595 ORTHO05D001573 1.3e-06 56.6 57 42.1
Nitab4.5_0002138g0050 Nicotiana tabacum HOM05D001595 ORTHO05D001573 1.3e-06 56.6 53 41.5
Atru.chr13.2075 Acer truncatum HOM05D001595 ORTHO05D001573 1.7e-06 56.2 50 38.0
EL10Ac2g03979 Beta vulgaris HOM05D001595 ORTHO05D001573 1.7e-06 56.2 45 46.7
Duzib116G0136 Durio zibethinus HOM05D001595 ORTHO05D001573 1.7e-06 56.2 60 38.3
Lsat_1_v5_gn_1_6241 Lactuca sativa HOM05D001595 ORTHO05D001573 1.7e-06 56.2 46 45.7
Carub.0004s0081 Capsella rubella HOM05D001595 ORTHO05D001573 2.2e-06 55.8 57 43.9
Carub.0007s0124 Capsella rubella HOM05D001595 ORTHO05D001573 2.2e-06 55.8 42 47.6
Lj3g0006531 Lotus japonicus HOM05D001595 ORTHO05D001573 2.2e-06 55.8 45 46.7
Nitab4.5_0001582g0120 Nicotiana tabacum HOM05D001595 ORTHO05D001573 2.2e-06 55.8 53 41.5
PSO063G6748 Papaver somniferum HOM05D001595 ORTHO05D001573 2.2e-06 55.8 43 48.8
Sp7g36540 Schrenkiella parvula HOM05D001595 ORTHO05D001573 2.2e-06 55.8 56 41.1
BcaNung01268 Brassica carinata HOM05D001595 ORTHO05D001573 2.9e-06 55.5 42 45.2
BcaNung01269 Brassica carinata HOM05D001595 ORTHO05D001573 2.9e-06 55.5 42 45.2
BolC1t00050H Brassica oleracea HOM05D001595 ORTHO05D001573 2.9e-06 55.5 42 45.2
BolC7t46732H Brassica oleracea HOM05D001595 ORTHO05D001573 2.9e-06 55.5 42 45.2
BraA01t00040Z Brassica rapa HOM05D001595 ORTHO05D001573 2.9e-06 55.5 56 41.1
CARHR247370 Cardamine hirsuta HOM05D001595 ORTHO05D001573 2.9e-06 55.5 56 41.1
CiPaw.16G010800 Carya illinoinensis HOM05D001595 ORTHO05D001573 2.9e-06 55.5 48 43.8
MELO3C004902.2 Cucumis melo HOM05D001595 ORTHO05D001573 2.9e-06 55.5 62 37.1
Glyma.20G168300 Glycine max HOM05D001595 ORTHO05D001573 2.9e-06 55.5 44 47.7
PSO017G1258 Papaver somniferum HOM05D001595 ORTHO05D001573 2.9e-06 55.5 51 41.2
PSO801G0676 Papaver somniferum HOM05D001595 ORTHO05D001573 2.9e-06 55.5 44 43.2
CARHR112820 Cardamine hirsuta HOM05D001595 ORTHO05D001573 3.7e-06 55.1 44 43.2
HanXRQChr02g0038121 Helianthus annuus HOM05D001595 ORTHO05D001573 3.7e-06 55.1 52 44.2
HanXRQChr02g0042711 Helianthus annuus HOM05D001595 ORTHO05D001573 3.7e-06 55.1 52 44.2
Hma1.2p1_0038F.1_g024240 Hydrangea macrophylla HOM05D001595 ORTHO05D001573 3.7e-06 55.1 44 45.5
Os11g0168000 Oryza sativa ssp. japonica HOM05D001595 ORTHO05D001573 3.7e-06 55.1 43 46.5
Sabra03G0141600 Salix brachista HOM05D001595 ORTHO05D001573 3.7e-06 55.1 58 36.2
Sabra03G0141800 Salix brachista HOM05D001595 ORTHO05D001573 3.7e-06 55.1 58 36.2
Sabra03G0142000 Salix brachista HOM05D001595 ORTHO05D001573 3.7e-06 55.1 58 36.2
Sabra03G0142400 Salix brachista HOM05D001595 ORTHO05D001573 3.7e-06 55.1 58 36.2
Thecc.08G155000 Theobroma cacao HOM05D001595 ORTHO05D001573 3.7e-06 55.1 57 42.1
HPP92_005744 Vanilla planifolia HOM05D001595 ORTHO05D001573 3.7e-06 55.1 57 38.6
AT4G39340 Arabidopsis thaliana HOM05D001595 ORTHO05D001573 4.9e-06 54.7 120 29.2
AUR62006156 Chenopodium quinoa HOM05D001595 ORTHO05D001573 4.9e-06 54.7 45 44.4
Migut.C00168 Erythranthe guttata HOM05D001595 ORTHO05D001573 4.9e-06 54.7 43 44.2
Gohir.D05G272700 Gossypium hirsutum HOM05D001595 ORTHO05D001573 4.9e-06 54.7 56 39.3
Gorai.009G285800 Gossypium raimondii HOM05D001595 ORTHO05D001573 4.9e-06 54.7 56 39.3
PSO063G2756 Papaver somniferum HOM05D001595 ORTHO05D001573 4.9e-06 54.7 53 47.2
PSO170G5457 Papaver somniferum HOM05D001595 ORTHO05D001573 4.9e-06 54.7 65 35.4
Rhsim10G0143700 Rhododendron simsii HOM05D001595 ORTHO05D001573 4.9e-06 54.7 50 42.0
Sc09g0009460 Simmondsia chinensis HOM05D001595 ORTHO05D001573 4.9e-06 54.7 43 46.5
PGSC0003DMG400006658 Solanum tuberosum HOM05D001595 ORTHO05D001573 4.9e-06 54.7 44 47.7
Thecc.06G138400 Theobroma cacao HOM05D001595 ORTHO05D001573 4.9e-06 54.7 44 40.9
CAN.G264.6 Capsicum annuum HOM05D001595 ORTHO05D001573 6.4e-06 54.3 44 47.7
CAN.G516.7 Capsicum annuum HOM05D001595 ORTHO05D001573 6.4e-06 54.3 43 46.5
Duzib235G1226 Durio zibethinus HOM05D001595 ORTHO05D001573 6.4e-06 54.3 59 40.7
Thhalv10000570m.g Eutrema salsugineum HOM05D001595 ORTHO05D001573 6.4e-06 54.3 60 38.3
Thhalv10026562m.g Eutrema salsugineum HOM05D001595 ORTHO05D001573 6.4e-06 54.3 42 45.2
Gohir.A05G270700 Gossypium hirsutum HOM05D001595 ORTHO05D001573 6.4e-06 54.3 56 39.3
Sp4g00900 Schrenkiella parvula HOM05D001595 ORTHO05D001573 6.4e-06 54.3 44 43.2
Sed0004907 Sechium edule HOM05D001595 ORTHO05D001573 6.4e-06 54.3 45 42.2
Solyc04g071640.1 Solanum lycopersicum HOM05D001595 ORTHO05D001573 6.4e-06 54.3 44 47.7
Solyc11g005500.1 Solanum lycopersicum HOM05D001595 ORTHO05D001573 6.4e-06 54.3 43 46.5
Carub.0004s0082 Capsella rubella HOM05D001595 ORTHO05D001573 8.3e-06 53.9 44 43.2
AUR62040231 Chenopodium quinoa HOM05D001595 ORTHO05D001573 8.3e-06 53.9 44 45.5
ClCG01G013540 Citrullus lanatus HOM05D001595 ORTHO05D001573 8.3e-06 53.9 44 43.2
Hma1.2p1_0240F.1_g100360 Hydrangea macrophylla HOM05D001595 ORTHO05D001573 8.3e-06 53.9 59 33.9
Lsat_1_v5_gn_3_64560 Lactuca sativa HOM05D001595 ORTHO05D001573 8.3e-06 53.9 44 45.5
PSO017G3093 Papaver somniferum HOM05D001595 ORTHO05D001573 8.3e-06 53.9 53 45.3
Potri.003G191800 Populus trichocarpa HOM05D001595 ORTHO05D001573 8.3e-06 53.9 57 36.8
Solyc11g005540.1 Solanum lycopersicum HOM05D001595 ORTHO05D001573 8.3e-06 53.9 43 46.5
PGSC0003DMG400003996 Solanum tuberosum HOM05D001595 ORTHO05D001573 8.3e-06 53.9 43 46.5
TAR381G0734 Trochodendron aralioides HOM05D001595 ORTHO05D001573 8.3e-06 53.9 43 46.5
TAR381G0944 Trochodendron aralioides HOM05D001595 ORTHO05D001573 8.3e-06 53.9 43 46.5


User provided reference genes

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