Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p029800 Quercus lobata HOM05D004540 ORTHO05D004852 2.5e-39 164.9 76 100.0
Cfa002837 Carpinus fangiana HOM05D004540 ORTHO05D004852 5.4e-34 147.1 76 84.2
Haze_25134 Corylus avellana HOM05D004540 ORTHO05D004852 1.6e-30 135.6 76 80.3
CiPaw.04G085800 Carya illinoinensis HOM05D004540 ORTHO05D004852 1.4e-29 132.5 69 84.1
CiPaw.03G127700 Carya illinoinensis HOM05D004540 ORTHO05D004852 2.6e-28 128.3 76 76.3
Thecc.01G124700 Theobroma cacao HOM05D004540 ORTHO05D004852 3.7e-27 124.4 73 72.6
Gohir.A11G055800 Gossypium hirsutum HOM05D004540 ORTHO05D004852 3.2e-26 121.3 74 73.0
Gohir.D11G059900 Gossypium hirsutum HOM05D004540 ORTHO05D004852 3.2e-26 121.3 74 73.0
Gorai.007G064600 Gossypium raimondii HOM05D004540 ORTHO05D004852 3.2e-26 121.3 74 73.0
Gohir.A10G083507 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.0e-24 116.3 73 68.5
Gohir.D10G105766 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.3e-24 115.9 73 68.5
Gorai.011G115500 Gossypium raimondii HOM05D004540 ORTHO05D004852 1.3e-24 115.9 73 68.5
Gohir.A05G386200 Gossypium hirsutum HOM05D004540 ORTHO05D004852 2.3e-24 115.2 77 70.1
Prupe.6G159700 Prunus persica HOM05D004540 ORTHO05D004852 3.0e-24 114.8 77 68.8
Gohir.D04G023300 Gossypium hirsutum HOM05D004540 ORTHO05D004852 5.0e-24 114.0 77 70.1
Gorai.012G033600 Gossypium raimondii HOM05D004540 ORTHO05D004852 5.0e-24 114.0 77 70.1
TPR.G37334 Trifolium pratense HOM05D004540 ORTHO05D004852 5.0e-24 114.0 76 69.7
Medtr8g092860 Medicago truncatula HOM05D004540 ORTHO05D004852 1.1e-23 112.8 76 67.1
Phvul.002G270200 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 5.6e-23 110.5 76 67.1
Cc07_g17790 Coffea canephora HOM05D004540 ORTHO05D004852 4.7e-22 107.5 74 64.9
Lj4g0001726 Lotus japonicus HOM05D004540 ORTHO05D004852 1.4e-21 105.9 77 68.8
Phvul.009G148100 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 1.4e-21 105.9 66 69.7
Lalb_Chr12g0203271 Lupinus albus HOM05D004540 ORTHO05D004852 2.3e-21 105.1 74 64.9
Manes.13G071600 Manihot esculenta HOM05D004540 ORTHO05D004852 6.8e-21 103.6 75 62.7
Cpa.g.sc42.109 Carica papaya HOM05D004540 ORTHO05D004852 8.9e-21 103.2 79 64.6
MD01G1010200 Malus domestica HOM05D004540 ORTHO05D004852 8.9e-21 103.2 82 67.1
RcHm_v2.0_Chr2g0120121 Rosa chinensis HOM05D004540 ORTHO05D004852 8.9e-21 103.2 78 66.7
FvH4_1g23990 Fragaria vesca HOM05D004540 ORTHO05D004852 1.5e-20 102.4 78 65.4
FAN23G3045 Fragaria x ananassa HOM05D004540 ORTHO05D004852 1.5e-20 102.4 78 65.4
FAN19G2513 Fragaria x ananassa HOM05D004540 ORTHO05D004852 2.0e-20 102.1 78 65.4
Potri.005G057400 Populus trichocarpa HOM05D004540 ORTHO05D004852 2.6e-20 101.7 77 62.3
FAN26G2008 Fragaria x ananassa HOM05D004540 ORTHO05D004852 3.4e-20 101.3 78 64.1
Glyma.08G147100 Glycine max HOM05D004540 ORTHO05D004852 7.5e-20 100.1 72 65.3
Medtr3g095690 Medicago truncatula HOM05D004540 ORTHO05D004852 7.5e-20 100.1 76 64.5
Glyma.05G189500 Glycine max HOM05D004540 ORTHO05D004852 9.9e-20 99.8 77 62.3
Ciclev10026873m.g Citrus clementina HOM05D004540 ORTHO05D004852 1.7e-19 99.0 76 60.5
TPR.G18724 Trifolium pratense HOM05D004540 ORTHO05D004852 1.7e-19 99.0 71 64.8
Manes.12G152100 Manihot esculenta HOM05D004540 ORTHO05D004852 6.4e-19 97.1 75 57.3
Potri.007G110700 Populus trichocarpa HOM05D004540 ORTHO05D004852 6.4e-19 97.1 77 59.7
Nn1g06160 Nelumbo nucifera HOM05D004540 ORTHO05D004852 1.4e-18 95.9 76 60.5
Lalb_Chr13g0296521 Lupinus albus HOM05D004540 ORTHO05D004852 9.2e-18 93.2 76 55.3
Lalb_Chr08g0238521 Lupinus albus HOM05D004540 ORTHO05D004852 1.6e-17 92.4 76 57.9
Glyma.04G215100 Glycine max HOM05D004540 ORTHO05D004852 2.7e-17 91.7 50 78.0
Sed0025334 Sechium edule HOM05D004540 ORTHO05D004852 2.7e-17 91.7 70 62.9
CSS0044504 Camellia sinensis var. sinensis HOM05D004540 ORTHO05D004852 1.0e-16 89.7 78 61.5
Lalb_Chr07g0184521 Lupinus albus HOM05D004540 ORTHO05D004852 1.7e-16 89.0 76 52.6
Eucgr.I00231 Eucalyptus grandis HOM05D004540 ORTHO05D004852 1.5e-15 85.9 76 59.2
Glyma.06G151100 Glycine max HOM05D004540 ORTHO05D004852 5.6e-15 84.0 49 75.5
Nn5g28680 Nelumbo nucifera HOM05D004540 ORTHO05D004852 7.3e-15 83.6 76 50.0
MELO3C008039.2 Cucumis melo HOM05D004540 ORTHO05D004852 2.1e-14 82.0 47 78.7
CsaV3_6G041820 Cucumis sativus L. HOM05D004540 ORTHO05D004852 1.1e-13 79.7 45 80.0
Thhalv10005301m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 2.4e-13 78.6 66 59.1
CARHR278640 Cardamine hirsuta HOM05D004540 ORTHO05D004852 3.1e-13 78.2 66 59.1
AT5G64667 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 6.8e-13 77.0 68 54.4
CiPaw.16G014800 Carya illinoinensis HOM05D004540 ORTHO05D004852 6.8e-13 77.0 68 57.4
BcaB02g09810 Brassica carinata HOM05D004540 ORTHO05D004852 2.0e-12 75.5 67 56.7
Lalb_Chr21g0305401 Lupinus albus HOM05D004540 ORTHO05D004852 2.6e-12 75.1 64 53.1
Carub.0008s2546 Capsella rubella HOM05D004540 ORTHO05D004852 4.4e-12 74.3 60 58.3
DCAR_014344 Daucus carota HOM05D004540 ORTHO05D004852 4.4e-12 74.3 81 48.1
Lalb_Chr06g0161521 Lupinus albus HOM05D004540 ORTHO05D004852 7.6e-12 73.6 66 53.0
Thhalv10022275m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 1.7e-11 72.4 72 50.0
BcaC01g02698 Brassica carinata HOM05D004540 ORTHO05D004852 3.8e-11 71.2 67 53.7
A06p31460 Brassica napus HOM05D004540 ORTHO05D004852 3.8e-11 71.2 67 53.7
C03p61500 Brassica napus HOM05D004540 ORTHO05D004852 3.8e-11 71.2 67 53.7
BolC3t18411H Brassica oleracea HOM05D004540 ORTHO05D004852 3.8e-11 71.2 67 53.7
BraA06t26083Z Brassica rapa HOM05D004540 ORTHO05D004852 3.8e-11 71.2 67 53.7
AL8G42080 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 4.9e-11 70.9 60 56.7
Phvul.007G078400 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 6.4e-11 70.5 64 54.7
BcaB04g19000 Brassica carinata HOM05D004540 ORTHO05D004852 8.4e-11 70.1 75 48.0
CARHR094090 Cardamine hirsuta HOM05D004540 ORTHO05D004852 8.4e-11 70.1 82 45.1
Potri.002G070401 Populus trichocarpa HOM05D004540 ORTHO05D004852 8.4e-11 70.1 68 55.9
Glyma.16G170400 Glycine max HOM05D004540 ORTHO05D004852 1.1e-10 69.7 70 50.0
Ciclev10003011m.g Citrus clementina HOM05D004540 ORTHO05D004852 1.4e-10 69.3 74 48.6
Haze_17734 Corylus avellana HOM05D004540 ORTHO05D004852 1.9e-10 68.9 80 53.8
DCAR_001351 Daucus carota HOM05D004540 ORTHO05D004852 1.9e-10 68.9 68 52.9
AT3G18715 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 2.4e-10 68.6 71 47.9
A03p40790 Brassica napus HOM05D004540 ORTHO05D004852 2.4e-10 68.6 75 46.7
BraA03t13237Z Brassica rapa HOM05D004540 ORTHO05D004852 2.4e-10 68.6 75 46.7
Thecc.08G147500 Theobroma cacao HOM05D004540 ORTHO05D004852 2.4e-10 68.6 71 50.7
BcaB01g05561 Brassica carinata HOM05D004540 ORTHO05D004852 3.2e-10 68.2 86 40.7
BcaB04g19982 Brassica carinata HOM05D004540 ORTHO05D004852 3.2e-10 68.2 67 50.7
C03p04700 Brassica napus HOM05D004540 ORTHO05D004852 3.2e-10 68.2 86 40.7
C03p49670 Brassica napus HOM05D004540 ORTHO05D004852 3.2e-10 68.2 75 46.7
BolC3t17265H Brassica oleracea HOM05D004540 ORTHO05D004852 3.2e-10 68.2 75 46.7
BcaC09g48828 Brassica carinata HOM05D004540 ORTHO05D004852 4.1e-10 67.8 76 43.4
C01p45480 Brassica napus HOM05D004540 ORTHO05D004852 4.1e-10 67.8 76 43.4
BolC1t04514H Brassica oleracea HOM05D004540 ORTHO05D004852 4.1e-10 67.8 76 43.4
Manes.18G089800 Manihot esculenta HOM05D004540 ORTHO05D004852 4.1e-10 67.8 67 52.2
Phvul.004G098900 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 4.1e-10 67.8 65 53.8
QL02p024551 Quercus lobata HOM05D004540 ORTHO05D004852 4.1e-10 67.8 68 50.0
Medtr1g099210 Medicago truncatula HOM05D004540 ORTHO05D004852 5.4e-10 67.4 60 51.7
A01p35740 Brassica napus HOM05D004540 ORTHO05D004852 9.2e-10 66.6 79 43.0
BraA01t03656Z Brassica rapa HOM05D004540 ORTHO05D004852 9.2e-10 66.6 79 43.0
Hma1.2p1_0483F.1_g162780 Hydrangea macrophylla HOM05D004540 ORTHO05D004852 1.2e-09 66.2 72 48.6
Migut.H01103 Erythranthe guttata HOM05D004540 ORTHO05D004852 1.6e-09 65.9 61 54.1
Lj5g0026068 Lotus japonicus HOM05D004540 ORTHO05D004852 1.6e-09 65.9 69 49.3
Thhalv10015116m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 2.1e-09 65.5 80 46.2
AL6G20210 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 2.7e-09 65.1 90 42.2
Cfa018340 Carpinus fangiana HOM05D004540 ORTHO05D004852 2.7e-09 65.1 72 52.8
Glyma.10G226800 Glycine max HOM05D004540 ORTHO05D004852 2.7e-09 65.1 69 49.3
Glyma.20G165500 Glycine max HOM05D004540 ORTHO05D004852 2.7e-09 65.1 61 52.5
BcaB04g20754 Brassica carinata HOM05D004540 ORTHO05D004852 3.5e-09 64.7 72 45.8
BcaC04g23300 Brassica carinata HOM05D004540 ORTHO05D004852 3.5e-09 64.7 72 54.2
A10p27650 Brassica napus HOM05D004540 ORTHO05D004852 3.5e-09 64.7 87 46.0
C09p09950 Brassica napus HOM05D004540 ORTHO05D004852 3.5e-09 64.7 72 54.2
BolC9t53903H Brassica oleracea HOM05D004540 ORTHO05D004852 3.5e-09 64.7 72 54.2
Manes.02G177000 Manihot esculenta HOM05D004540 ORTHO05D004852 3.5e-09 64.7 71 49.3
Potri.005G189900 Populus trichocarpa HOM05D004540 ORTHO05D004852 3.5e-09 64.7 71 49.3
BcaB08g37167 Brassica carinata HOM05D004540 ORTHO05D004852 4.6e-09 64.3 87 42.5
BraA09t36527Z Brassica rapa HOM05D004540 ORTHO05D004852 4.6e-09 64.3 72 52.8
Hma1.2p1_1454F.1_g284340 Hydrangea macrophylla HOM05D004540 ORTHO05D004852 6.0e-09 63.9 72 47.2
BcaB06g25922 Brassica carinata HOM05D004540 ORTHO05D004852 7.8e-09 63.5 72 44.4
BcaNung06138 Brassica carinata HOM05D004540 ORTHO05D004852 7.8e-09 63.5 72 44.4
Migut.L00808 Erythranthe guttata HOM05D004540 ORTHO05D004852 7.8e-09 63.5 78 42.3
Migut.L00903 Erythranthe guttata HOM05D004540 ORTHO05D004852 1.0e-08 63.2 71 45.1
A05p30900 Brassica napus HOM05D004540 ORTHO05D004852 3.0e-08 61.6 72 43.1
BraA05t21932Z Brassica rapa HOM05D004540 ORTHO05D004852 3.0e-08 61.6 72 43.1
MD05G1020400 Malus domestica HOM05D019963 ORTHO05D004852 3.9e-08 61.2 68 51.5
TPR.G10141 Trifolium pratense HOM05D004540 ORTHO05D004852 3.9e-08 61.2 67 50.7
AT5G09805 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 5.1e-08 60.8 87 40.2
Prupe.8G024400 Prunus persica HOM05D004540 ORTHO05D004852 6.6e-08 60.5 71 47.9
CiPaw.15G019000 Carya illinoinensis HOM05D004540 ORTHO05D004852 1.1e-07 59.7 75 48.0
Sabra02G0055000 Salix brachista HOM05D004540 ORTHO05D004852 1.1e-07 59.7 65 52.3
Glyma.02G084000 Glycine max HOM05D004540 ORTHO05D004852 1.5e-07 59.3 50 56.0
BcaC03g13276 Brassica carinata HOM05D004540 ORTHO05D004852 1.9e-07 58.9 68 42.6
Carub.0003s1849 Capsella rubella HOM05D004540 ORTHO05D004852 2.5e-07 58.5 33 69.7
BcaC05g28580 Brassica carinata HOM05D004540 ORTHO05D004852 4.3e-07 57.8 75 44.0
C02p04070 Brassica napus HOM05D004540 ORTHO05D004852 4.3e-07 57.8 52 50.0
C05p46830 Brassica napus HOM05D004540 ORTHO05D004852 4.3e-07 57.8 75 44.0
BolC2t06369H Brassica oleracea HOM05D004540 ORTHO05D004852 4.3e-07 57.8 52 50.0
BolC5t33413H Brassica oleracea HOM05D004540 ORTHO05D004852 4.3e-07 57.8 75 44.0
Os04g0418100 Oryza sativa ssp. japonica HOM05D047234 ORTHO05D004852 5.6e-07 57.4 53 56.6
Aa31LG1G17280 Aethionema arabicum HOM05D004540 ORTHO05D004852 9.6e-07 56.6 64 48.4
arahy.Tifrunner.gnm1.ann1.M3AF87 Arachis hypogaea HOM05D004540 ORTHO05D004852 1.2e-06 56.2 76 43.4
SGA_v2.0_scaffold137G35143 Striga asiatica HOM05D004540 ORTHO05D004852 1.6e-06 55.8 68 45.6
BcaB08g37180 Brassica carinata HOM05D004540 ORTHO05D004852 2.1e-06 55.5 27 85.2
C09p67710 Brassica napus HOM05D004540 ORTHO05D004852 2.1e-06 55.5 27 85.2
BolC9t59533H Brassica oleracea HOM05D004540 ORTHO05D004852 2.1e-06 55.5 27 85.2
CARHR203600 Cardamine hirsuta HOM05D004540 ORTHO05D004852 2.8e-06 55.1 30 76.7
TPR.G36647 Trifolium pratense HOM05D004540 ORTHO05D004852 2.8e-06 55.1 63 54.0
Gohir.D05G243600 Gossypium hirsutum HOM05D037961 ORTHO05D004852 3.6e-06 54.7 78 38.5
Sp6g33605 Schrenkiella parvula HOM05D004540 ORTHO05D004852 3.6e-06 54.7 30 76.7
Aa31LG3G17310 Aethionema arabicum HOM05D004540 ORTHO05D004852 4.7e-06 54.3 25 88.0
BraA02t05000Z Brassica rapa HOM05D004540 ORTHO05D004852 6.2e-06 53.9 68 39.7
A02p00160 Brassica napus HOM05D004540 ORTHO05D004852 8.1e-06 53.5 69 40.6


User provided reference genes

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