Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p028841 Quercus lobata HOM05D004025 ORTHO05D004929 1.4e-174 617.1 402 100.0
Haze_25220 Corylus avellana HOM05D004025 ORTHO05D004929 2.0e-130 470.3 380 81.6
Cfa002885 Carpinus fangiana HOM05D004025 ORTHO05D004929 4.3e-128 462.6 380 81.1
FAN28G0438 Fragaria x ananassa HOM05D004025 ORTHO05D004929 9.2e-123 444.9 378 74.6
FvH4_1g24240 Fragaria vesca HOM05D004025 ORTHO05D004929 1.2e-122 444.5 378 75.4
FAN26G1692 Fragaria x ananassa HOM05D004025 ORTHO05D004929 3.5e-122 443.0 378 74.9
FAN19G0688 Fragaria x ananassa HOM05D004025 ORTHO05D004929 7.8e-122 441.8 378 74.9
CiPaw.04G083500 Carya illinoinensis HOM05D004025 ORTHO05D004929 3.0e-121 439.9 380 73.9
CANSAT01G1331 Cannabis sativa HOM05D004025 ORTHO05D004929 2.1e-119 433.7 378 77.2
COL.COLO4_35712 Corchorus olitorius HOM05D004025 ORTHO05D004929 3.2e-115 419.9 381 71.7
Cpa.g.sc42.143 Carica papaya HOM05D004025 ORTHO05D004929 9.2e-115 418.3 272 80.5
FAN23G0558 Fragaria x ananassa HOM05D004025 ORTHO05D004929 9.2e-115 418.3 378 72.5
CiPaw.03G122700 Carya illinoinensis HOM05D004025 ORTHO05D004929 1.6e-114 417.5 380 73.2
Ciclev10000085m.g Citrus clementina HOM05D004025 ORTHO05D004929 2.7e-114 416.8 378 74.1
Manes.13G083201 Manihot esculenta HOM05D004025 ORTHO05D004929 2.7e-114 416.8 272 79.8
RcHm_v2.0_Chr2g0120731 Rosa chinensis HOM05D004025 ORTHO05D004929 3.5e-114 416.4 381 74.0
FAN23G0951 Fragaria x ananassa HOM05D004025 ORTHO05D004929 4.6e-114 416.0 378 72.2
Gohir.D12G084000 Gossypium hirsutum HOM05D004025 ORTHO05D004929 1.3e-113 414.5 382 71.2
Gorai.008G094100 Gossypium raimondii HOM05D004025 ORTHO05D004929 1.7e-113 414.1 382 71.2
MD09G1261800 Malus domestica HOM05D004025 ORTHO05D004929 1.7e-113 414.1 366 74.0
VMungo1309G0837 Vigna mungo HOM05D004025 ORTHO05D004929 3.0e-113 413.3 274 78.8
Manes.12G154400 Manihot esculenta HOM05D004025 ORTHO05D004929 3.9e-113 412.9 272 79.0
Thecc.01G130400 Theobroma cacao HOM05D004025 ORTHO05D004929 5.1e-113 412.5 383 72.3
TWI31G0593 Tripterygium wilfordii HOM05D004025 ORTHO05D004929 6.6e-113 412.1 272 79.8
Gohir.A12G090600 Gossypium hirsutum HOM05D004025 ORTHO05D004929 5.6e-112 409.1 382 69.9
TWI75G0726 Tripterygium wilfordii HOM05D004025 ORTHO05D004929 2.8e-111 406.8 378 69.3
Aqoxy6G00339 Aquilegia oxysepala HOM05D004025 ORTHO05D004929 3.6e-111 406.4 273 78.0
Glyma.05G191200 Glycine max HOM05D004025 ORTHO05D004929 8.1e-111 405.2 276 76.4
MD17G1256600 Malus domestica HOM05D004025 ORTHO05D004929 8.1e-111 405.2 367 73.6
PGR079G0002 Punica granatum HOM05D004025 ORTHO05D004929 8.1e-111 405.2 272 76.5
PGR119G0653 Punica granatum HOM05D004025 ORTHO05D004929 8.1e-111 405.2 272 76.5
Phvul.009G149800 Phaseolus vulgaris HOM05D004025 ORTHO05D004929 1.1e-110 404.8 274 77.7
Glyma.08G156400 Glycine max HOM05D004025 ORTHO05D004929 2.4e-110 403.7 276 76.4
VMungo0251G2658 Vigna mungo HOM05D004025 ORTHO05D004929 5.2e-110 402.5 274 77.0
Phvul.002G271500 Phaseolus vulgaris HOM05D004025 ORTHO05D004929 2.0e-109 400.6 274 76.3
THA.LOC104800034 Tarenaya hassleriana HOM05D004025 ORTHO05D004929 4.4e-109 399.4 271 76.8
Sc09g0002360 Simmondsia chinensis HOM05D004025 ORTHO05D004929 5.8e-109 399.1 372 63.7
TAR381G0182 Trochodendron aralioides HOM05D004025 ORTHO05D004929 5.8e-109 399.1 273 76.6
Lj1g0010712 Lotus japonicus HOM05D004025 ORTHO05D004929 7.6e-109 398.7 280 73.2
Glyma.06G152800 Glycine max HOM05D004025 ORTHO05D004929 9.9e-109 398.3 274 76.6
Glyma.04G213400 Glycine max HOM05D004025 ORTHO05D004929 1.3e-108 397.9 274 77.0
Hma1.2p1_0476F.1_g160915 Hydrangea macrophylla HOM05D004025 ORTHO05D004929 1.7e-108 397.5 272 77.2
Hund21821 Selenicereus undatus HOM05D004025 ORTHO05D004929 3.8e-108 396.4 272 73.5
TAR625G0443 Trochodendron aralioides HOM05D004025 ORTHO05D004929 3.8e-108 396.4 273 76.6
Dinv24344 Davidia involucrata HOM05D004025 ORTHO05D004929 4.9e-108 396.0 266 77.4
Ah.06g190860 Amaranthus hybridus HOM05D004025 ORTHO05D004929 6.4e-108 395.6 371 63.9
Potri.005G059000 Populus trichocarpa HOM05D004025 ORTHO05D004929 1.1e-107 394.8 287 72.5
GSVIVG01026496001 Vitis vinifera HOM05D004025 ORTHO05D004929 1.1e-107 394.8 272 76.5
AUR62006840 Chenopodium quinoa HOM05D004025 ORTHO05D004929 3.2e-107 393.3 378 61.9
Lj4g0019129 Lotus japonicus HOM05D004025 ORTHO05D004929 4.1e-107 392.9 276 74.6
Actinidia06630 Actinidia chinensis HOM05D004025 ORTHO05D004929 5.4e-107 392.5 271 76.4
ClCG01G015430 Citrullus lanatus HOM05D004025 ORTHO05D004929 5.4e-107 392.5 382 69.9
Nn1g06239 Nelumbo nucifera HOM05D004025 ORTHO05D004929 9.2e-107 391.7 273 74.4
Sed0015970 Sechium edule HOM05D004025 ORTHO05D004929 9.2e-107 391.7 380 70.5
Lj4C845G3 Lonicera japonica HOM05D004025 ORTHO05D004929 1.2e-106 391.3 346 72.8
EL10Ac4g09596 Beta vulgaris HOM05D004025 ORTHO05D004929 1.6e-106 391.0 347 66.3
Actinidia20083 Actinidia chinensis HOM05D004025 ORTHO05D004929 4.6e-106 389.4 273 75.1
Lalb_Chr12g0203161 Lupinus albus HOM05D004025 ORTHO05D004929 4.6e-106 389.4 275 74.9
Rhsim10G0135700 Rhododendron simsii HOM05D004025 ORTHO05D004929 4.6e-106 389.4 274 76.3
AT5G64070 Arabidopsis thaliana HOM05D004025 ORTHO05D004929 7.8e-106 388.7 272 74.3
AL8G41330 Arabidopsis lyrata HOM05D004025 ORTHO05D004929 1.0e-105 388.3 272 74.3
Aa31LG1G17850 Aethionema arabicum HOM05D004025 ORTHO05D004929 1.7e-105 387.5 266 75.2
CARHR277980 Cardamine hirsuta HOM05D004025 ORTHO05D004929 3.0e-105 386.7 272 75.0
AT5G09350 Arabidopsis thaliana HOM05D004025 ORTHO05D004929 3.9e-105 386.3 272 75.4
Medtr8g093570 Medicago truncatula HOM05D004025 ORTHO05D004929 3.9e-105 386.3 404 67.8
Psat7g045720 Pisum sativum HOM05D004025 ORTHO05D004929 3.9e-105 386.3 276 73.9
CARHR204050 Cardamine hirsuta HOM05D004025 ORTHO05D004929 5.1e-105 386.0 272 74.3
Sabra07G0089100 Salix brachista HOM05D004025 ORTHO05D004929 5.1e-105 386.0 287 71.1
vmacro12812 Vaccinium macrocarpon HOM05D004025 ORTHO05D004929 8.7e-105 385.2 274 75.9
CsaV3_6G041660 Cucumis sativus L. HOM05D004025 ORTHO05D004929 2.5e-104 383.6 275 72.4
DCAR_014341 Daucus carota HOM05D004025 ORTHO05D004929 2.5e-104 383.6 266 76.3
BcaB02g09789 Brassica carinata HOM05D004025 ORTHO05D004929 4.3e-104 382.9 266 74.4
MELO3C008054.2 Cucumis melo HOM05D004025 ORTHO05D004929 9.6e-104 381.7 381 68.2
AUR62000495 Chenopodium quinoa HOM05D004025 ORTHO05D004929 1.2e-103 381.3 366 62.0
Eucgr.L02369 Eucalyptus grandis HOM05D004025 ORTHO05D004929 1.6e-103 380.9 272 72.1
A06p30780 Brassica napus HOM05D004025 ORTHO05D004929 2.1e-103 380.6 266 74.1
BraA06t26020Z Brassica rapa HOM05D004025 ORTHO05D004929 2.1e-103 380.6 266 74.1
Carub.0008s2485 Capsella rubella HOM05D004025 ORTHO05D004929 2.8e-103 380.2 272 73.2
Lalb_Chr08g0238391 Lupinus albus HOM05D004025 ORTHO05D004929 2.8e-103 380.2 274 73.4
Nitab4.5_0005674g0010 Nicotiana tabacum HOM05D004025 ORTHO05D004929 2.8e-103 380.2 275 74.2
Peaxi162Scf00589g00320 Petunia axillaris HOM05D004025 ORTHO05D004929 2.8e-103 380.2 275 74.2
BolC3t18483H Brassica oleracea HOM05D004025 ORTHO05D004929 3.6e-103 379.8 264 74.2
BcaC01g02663 Brassica carinata HOM05D004025 ORTHO05D004929 6.2e-103 379.0 266 73.7
Nn5g28584 Nelumbo nucifera HOM05D004025 ORTHO05D004929 6.2e-103 379.0 261 75.9
C03p62200 Brassica napus HOM05D004025 ORTHO05D004929 8.1e-103 378.6 266 73.7
Cc07_g18300 Coffea canephora HOM05D004025 ORTHO05D004929 8.1e-103 378.6 284 71.1
Potri.007G109000 Populus trichocarpa HOM05D004025 ORTHO05D004929 8.1e-103 378.6 304 66.8
Sp2g27140 Schrenkiella parvula HOM05D004025 ORTHO05D004929 1.4e-102 377.9 266 73.7
Aa31LG3G17690 Aethionema arabicum HOM05D004025 ORTHO05D004929 1.8e-102 377.5 272 72.4
CSS0008777 Camellia sinensis var. sinensis HOM05D004025 ORTHO05D004929 1.8e-102 377.5 271 74.2
Eucgr.I00214 Eucalyptus grandis HOM05D004025 ORTHO05D004929 5.2e-102 375.9 272 71.3
arahy.Tifrunner.gnm1.ann1.P4XMCK Arachis hypogaea HOM05D004025 ORTHO05D004929 6.9e-102 375.6 401 66.6
Thhalv10003553m.g Eutrema salsugineum HOM05D004025 ORTHO05D004929 9.0e-102 375.2 266 72.9
PSO675G2111 Papaver somniferum HOM05D004025 ORTHO05D004929 2.2e-100 370.5 268 76.9
Carub.0006s0789 Capsella rubella HOM05D004025 ORTHO05D004929 2.9e-100 370.2 272 71.0
CAN.G652.7 Capsicum annuum HOM05D004025 ORTHO05D004929 2.9e-100 370.2 270 72.6
Sopen11g001850 Solanum pennellii HOM05D004025 ORTHO05D004929 3.8e-100 369.8 274 73.7
arahy.Tifrunner.gnm1.ann1.GI519K Arachis hypogaea HOM05D004025 ORTHO05D004929 6.4e-100 369.0 279 72.0
BcaB07g29718 Brassica carinata HOM05D004025 ORTHO05D004929 6.4e-100 369.0 270 71.1
BolC2t12384H Brassica oleracea HOM05D004025 ORTHO05D004929 8.4e-100 368.6 267 72.7
PSO541G3336 Papaver somniferum HOM05D004025 ORTHO05D004929 1.1e-99 368.2 268 76.5
AL6G19740 Arabidopsis lyrata HOM05D004025 ORTHO05D004929 2.4e-99 367.1 272 70.6
BcaC03g18241 Brassica carinata HOM05D004025 ORTHO05D004929 2.4e-99 367.1 267 72.3
C02p63120 Brassica napus HOM05D004025 ORTHO05D004929 3.2e-99 366.7 266 71.4
PGSC0003DMG401028661 Solanum tuberosum HOM05D004025 ORTHO05D004929 3.2e-99 366.7 269 73.6
A02p43140 Brassica napus HOM05D004025 ORTHO05D004929 4.2e-99 366.3 266 71.4
BraA02t09234Z Brassica rapa HOM05D004025 ORTHO05D004929 4.2e-99 366.3 266 71.4
arahy.Tifrunner.gnm1.ann1.T69UQ6 Arachis hypogaea HOM05D004025 ORTHO05D004929 5.4e-99 365.9 279 71.7
Solyc11g005910.2 Solanum lycopersicum HOM05D004025 ORTHO05D004929 5.4e-99 365.9 274 73.4
Psat0s2140g0080 Pisum sativum HOM05D004025 ORTHO05D004929 2.7e-98 363.6 275 70.9
ATR0721G093 Amborella trichopoda HOM05D004025 ORTHO05D004929 3.5e-98 363.2 282 68.1
Lsat_1_v5_gn_8_116820 Lactuca sativa HOM05D004025 ORTHO05D004929 1.7e-97 360.9 266 71.8
TPR.G37364 Trifolium pratense HOM05D004025 ORTHO05D004929 3.0e-97 360.1 275 69.1
Ca_17642_v3 Cicer arietinum L. HOM05D002604 ORTHO05D004929 3.9e-97 359.8 276 69.2
TPR.G34649 Trifolium pratense HOM05D004025 ORTHO05D004929 3.9e-97 359.8 267 71.2
Ca_16939_v3 Cicer arietinum L. HOM05D004025 ORTHO05D004929 5.1e-97 359.4 277 68.2
Ca_16958_v3 Cicer arietinum L. HOM05D004025 ORTHO05D004929 5.1e-97 359.4 277 68.2
Nitab4.5_0002667g0010 Nicotiana tabacum HOM05D004025 ORTHO05D004929 8.7e-97 358.6 275 70.5
SHI11475 Sapria himalayana HOM05D004025 ORTHO05D004929 1.1e-96 358.2 274 68.6
HanXRQChr09g0258681 Helianthus annuus HOM05D004025 ORTHO05D004929 1.5e-96 357.8 267 71.5
Lsat_1_v5_gn_5_42641 Lactuca sativa HOM05D004025 ORTHO05D004929 1.6e-95 354.4 277 71.1
SGA_v2.0_scaffold132G34527 Striga asiatica HOM05D004025 ORTHO05D004929 4.8e-95 352.8 288 67.0
Migut.L00888 Erythranthe guttata HOM05D004025 ORTHO05D004929 8.1e-95 352.1 292 67.8
CDE06G1971 Ceratophyllum demersum HOM05D004025 ORTHO05D004929 4.0e-94 349.7 271 68.3
SalBow1G5432 Salvia bowleyana HOM05D004025 ORTHO05D004929 1.2e-93 348.2 269 69.9
HPP92_019399 Vanilla planifolia HOM05D004025 ORTHO05D004929 2.0e-93 347.4 274 67.2
Oeu047692.2 Olea europaea HOM05D004025 ORTHO05D004929 8.4e-92 342.0 286 66.1
MBI06_g29665_MAGBIO Magnolia biondii HOM05D004025 ORTHO05D004929 1.1e-91 341.7 281 66.9
MSTRG.2662 Avicennia marina HOM05D004025 ORTHO05D004929 1.4e-91 341.3 301 63.5
unitig_52.g17244 Utricularia gibba HOM05D004025 ORTHO05D004929 6.4e-84 315.8 287 60.3
Medtr3g096110 Medicago truncatula HOM05D004025 ORTHO05D004929 1.1e-80 305.1 219 72.6
Zm00001eb168670 Zea mays HOM05D004025 ORTHO05D004929 1.1e-80 305.1 278 59.0
CDE08G1435 Ceratophyllum demersum HOM05D004025 ORTHO05D004929 1.3e-76 291.6 221 71.0
Mapoly0091s0020 Marchantia polymorpha HOM05D004025 ORTHO05D004929 2.7e-74 283.9 274 55.5
SEGI_16906 Sequoiadendron giganteum HOM05D004025 ORTHO05D004929 1.8e-73 281.2 270 58.5
Pp3c5_11330 Physcomitrium patens HOM05D004025 ORTHO05D004929 5.0e-68 263.1 308 50.0
Prupe.3G159200 Prunus persica HOM05D004025 ORTHO05D004929 2.5e-64 250.8 276 72.1
SMO134G0131 Selaginella moellendorffii HOM05D004025 ORTHO05D004929 1.8e-62 244.6 280 51.4
SMO182G0011 Selaginella moellendorffii HOM05D004025 ORTHO05D004929 9.1e-62 242.3 279 51.6
AagrBONN_evm.TU.Sc2ySwM_228.921 Anthoceros agrestis HOM05D004025 ORTHO05D004929 5.9e-61 239.6 281 48.8
ECA232G2812 Erigeron canadensis HOM05D004025 ORTHO05D004929 7.9e-58 229.2 181 69.1
Pp3c6_11330 Physcomitrium patens HOM05D004025 ORTHO05D004929 3.0e-57 227.3 285 48.4
CBR_g34503 Chara braunii HOM05D004025 ORTHO05D004929 1.1e-46 192.2 164 56.1
Zm00001eb087390 Zea mays HOM05D004025 ORTHO05D004929 3.5e-45 187.2 181 56.4
Cre06.g304650 Chlamydomonas reinhardtii HOM05D004025 ORTHO05D004929 3.1e-17 94.4 187 31.0
TPR.G7026 Trifolium pratense HOM05D004025 ORTHO05D004929 2.7e-13 81.3 59 69.5


User provided reference genes

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