Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p027780 Quercus lobata HOM05D010496 ORTHO05D010879 4.8e-163 577.8 296 100.0
Cfa008703 Carpinus fangiana HOM05D010496 ORTHO05D010879 6.4e-91 338.2 294 63.3
Haze_11711 Corylus avellana HOM05D010496 ORTHO05D010879 1.1e-90 337.4 294 62.6
CiPaw.01G109800 Carya illinoinensis HOM05D010496 ORTHO05D010879 1.5e-87 327.0 298 61.4
Prupe.1G176100 Prunus persica HOM05D010496 ORTHO05D010879 1.6e-57 227.3 304 46.4
MD04G1026500 Malus domestica HOM05D010496 ORTHO05D010879 8.8e-48 194.9 303 42.6
GSVIVG01031653001 Vitis vinifera HOM05D010496 ORTHO05D010879 2.8e-38 163.3 319 35.7
RcHm_v2.0_Chr4g0410661 Rosa chinensis HOM05D010496 ORTHO05D010879 3.7e-38 162.9 320 37.2
TAR365G1027 Trochodendron aralioides HOM05D010496 ORTHO05D010879 4.1e-37 159.5 303 39.6
TAR365G0164 Trochodendron aralioides HOM05D003788 ORTHO05D010879 1.1e-34 151.4 308 37.3
Duzib151G0883 Durio zibethinus HOM05D010496 ORTHO05D010879 1.1e-29 134.8 273 38.8
FAN12G2147 Fragaria x ananassa HOM05D010496 ORTHO05D010879 4.1e-29 132.9 328 33.8
Nn1g09760 Nelumbo nucifera HOM05D003788 ORTHO05D010879 7.0e-29 132.1 309 34.0
FAN22G0913 Fragaria x ananassa HOM05D010496 ORTHO05D010879 1.3e-27 127.9 328 33.2
Glyma.10G293200 Glycine max HOM05D011141 ORTHO05D010879 2.7e-25 120.2 309 35.6
FvH4_4g12430 Fragaria vesca HOM05D010496 ORTHO05D010879 1.0e-24 118.2 324 31.8
FAN07G2091 Fragaria x ananassa HOM05D010496 ORTHO05D010879 1.8e-24 117.5 296 31.8
Glyma.20G243300 Glycine max HOM05D011141 ORTHO05D010879 6.8e-24 115.5 304 34.5
Phvul.007G007000 Phaseolus vulgaris HOM05D011141 ORTHO05D010879 1.2e-23 114.8 298 32.9
Thecc.04G186900 Theobroma cacao HOM05D010496 ORTHO05D010879 1.7e-22 110.9 197 37.1
arahy.Tifrunner.gnm1.ann1.R8V4SK Arachis hypogaea HOM05D011141 ORTHO05D010879 7.0e-21 105.5 305 31.5
arahy.Tifrunner.gnm1.ann1.P32IB9 Arachis hypogaea HOM05D011141 ORTHO05D010879 1.2e-20 104.8 305 31.5
Medtr1g116100 Medicago truncatula HOM05D011141 ORTHO05D010879 2.7e-20 103.6 228 38.6
Gohir.A09G209500 Gossypium hirsutum HOM05D010496 ORTHO05D010879 5.9e-20 102.4 195 35.9
Gohir.D09G202900 Gossypium hirsutum HOM05D010496 ORTHO05D010879 1.0e-19 101.7 208 35.6
Gorai.006G226800 Gossypium raimondii HOM05D010496 ORTHO05D010879 1.7e-19 100.9 190 35.8
Sed0016606 Sechium edule HOM05D010496 ORTHO05D010879 4.2e-18 96.3 265 30.2
Aqoxy2G04009 Aquilegia oxysepala HOM05D003788 ORTHO05D010879 2.8e-17 93.6 294 27.9
Glyma.10G293000 Glycine max HOM05D011141 ORTHO05D010879 4.7e-17 92.8 298 31.9
VMungo0720G3183 Vigna mungo HOM05D011141 ORTHO05D010879 4.7e-17 92.8 309 28.8
Lj2g0022590 Lotus japonicus HOM05D011141 ORTHO05D010879 4.0e-16 89.7 271 31.0
Glyma.20G243200 Glycine max HOM05D011141 ORTHO05D010879 5.2e-16 89.4 265 31.7
TPR.G10391 Trifolium pratense HOM05D011141 ORTHO05D010879 3.4e-15 86.7 224 35.3
AUR62018491 Chenopodium quinoa HOM05D007934 ORTHO05D010879 3.7e-14 83.2 246 31.7
AUR62026200 Chenopodium quinoa HOM05D007934 ORTHO05D010067 1.4e-13 81.3 267 30.7
VMungo0720G2993 Vigna mungo HOM05D011141 ORTHO05D010879 3.1e-13 80.1 265 30.6
HPP92_015789 Vanilla planifolia HOM05D003788 ORTHO05D004633 2.7e-12 77.0 235 29.4
ECA236G3073 Erigeron canadensis HOM05D003788 ORTHO05D004633 2.3e-11 73.9 249 30.1
GSVIVG01014849001 Vitis vinifera HOM05D003788 ORTHO05D004633 1.5e-10 71.2 230 28.7
MBI14_g10253_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 2.5e-10 70.5 293 27.6
TWI38G0822 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 2.5e-10 70.5 171 32.7
VMungo0720G1878 Vigna mungo HOM05D011141 ORTHO05D010879 3.3e-10 70.1 253 28.9
Hma1.2p1_0321F.1_g124360 Hydrangea macrophylla HOM05D003788 ORTHO05D004633 4.3e-10 69.7 210 31.0
TAR629G3040 Trochodendron aralioides HOM05D003788 ORTHO05D004633 5.6e-10 69.3 105 39.0
CARHR269650 Cardamine hirsuta HOM05D003788 ORTHO05D004633 7.3e-10 68.9 74 44.6
CDE03G0063 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 1.6e-09 67.8 64 45.3
EL10Ac3g07401 Beta vulgaris HOM05D010496 ORTHO05D010879 2.1e-09 67.4 127 33.1
HPP92_022807 Vanilla planifolia HOM05D003788 ORTHO05D004633 2.1e-09 67.4 48 58.3
PSO782G4685 Papaver somniferum HOM05D003788 ORTHO05D004633 3.6e-09 66.6 95 38.9
ATR0751G208 Amborella trichopoda HOM05D003788 ORTHO05D004633 6.1e-09 65.9 316 27.5
BolC3t14026H Brassica oleracea HOM05D003788 ORTHO05D004633 6.1e-09 65.9 236 27.5
Carub.0008s1657 Capsella rubella HOM05D003788 ORTHO05D004633 1.0e-08 65.1 96 32.3
CDE11G0275 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 1.0e-08 65.1 204 28.9
Duzib170G0482 Durio zibethinus HOM05D003788 ORTHO05D004633 1.0e-08 65.1 131 33.6
PSO675G9246 Papaver somniferum HOM05D061670 ORTHO05D010879 1.0e-08 65.1 119 35.3
CANSAT11G0655 Cannabis sativa HOM05D003788 ORTHO05D004633 1.4e-08 64.7 59 50.8
Duzib268G1743 Durio zibethinus HOM05D003788 ORTHO05D004633 1.4e-08 64.7 129 30.2
Lj1A901G37 Lonicera japonica HOM05D003788 ORTHO05D004633 1.4e-08 64.7 121 30.6
Nn1g07620 Nelumbo nucifera HOM05D003788 ORTHO05D004633 1.4e-08 64.7 280 24.6
TWI14G1222 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 1.4e-08 64.7 129 36.4
TWI39G0992 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 1.4e-08 64.7 129 36.4
TAR627G0146 Trochodendron aralioides HOM05D003788 ORTHO05D004633 1.4e-08 64.7 118 34.7
AL8G31880 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 1.8e-08 64.3 78 41.0
Lalb_Chr06g0164061 Lupinus albus HOM05D011141 ORTHO05D010879 1.8e-08 64.3 204 29.4
Thecc.07G001100 Theobroma cacao HOM05D003788 ORTHO05D004633 1.8e-08 64.3 125 33.6
BcaC03g14234 Brassica carinata HOM05D003788 ORTHO05D004633 2.3e-08 63.9 221 29.4
C02p15400 Brassica napus HOM05D003788 ORTHO05D004633 2.3e-08 63.9 221 29.4
BolC2t07655H Brassica oleracea HOM05D003788 ORTHO05D004633 2.3e-08 63.9 221 29.4
Cpa.g.sc12.61 Carica papaya HOM05D003788 ORTHO05D004633 2.3e-08 63.9 204 29.4
TAR626G0610 Trochodendron aralioides HOM05D003788 ORTHO05D004633 2.3e-08 63.9 151 28.5
Dinv40920 Davidia involucrata HOM05D003788 ORTHO05D004633 3.0e-08 63.5 270 28.5
Hund23029 Selenicereus undatus HOM05D003788 ORTHO05D004633 3.0e-08 63.5 114 32.5
SGA_v2.0_scaffold7G03552 Striga asiatica HOM05D003788 ORTHO05D004633 3.0e-08 63.5 225 28.4
BraA02t05990Z Brassica rapa HOM05D003788 ORTHO05D004633 4.0e-08 63.2 69 43.5
CiPaw.11G210900 Carya illinoinensis HOM05D003788 ORTHO05D004633 4.0e-08 63.2 94 37.2
FAN16G1134 Fragaria x ananassa HOM05D003788 ORTHO05D004633 4.0e-08 63.2 88 37.5
SGA_v2.0_scaffold11G05962 Striga asiatica HOM05D003788 ORTHO05D004633 4.0e-08 63.2 203 30.5
Ah.04g166650 Amaranthus hybridus HOM05D003788 ORTHO05D004633 5.2e-08 62.8 81 39.5
FvH4_3g41530 Fragaria vesca HOM05D003788 ORTHO05D004633 5.2e-08 62.8 88 37.5
FAN11G0056 Fragaria x ananassa HOM05D003788 ORTHO05D004633 5.2e-08 62.8 88 37.5
FAN25G3203 Fragaria x ananassa HOM05D003788 ORTHO05D004633 5.2e-08 62.8 88 37.5
Phvul.007G006800 Phaseolus vulgaris HOM05D011141 ORTHO05D010879 5.2e-08 62.8 195 31.8
Sed0023936 Sechium edule HOM05D003788 ORTHO05D004633 5.2e-08 62.8 110 32.7
BcaB05g22252 Brassica carinata HOM05D003788 ORTHO05D004633 6.8e-08 62.4 266 28.6
AUR62035659 Chenopodium quinoa HOM05D003788 ORTHO05D004633 6.8e-08 62.4 47 48.9
MD11G1046500 Malus domestica HOM05D003788 ORTHO05D004633 6.8e-08 62.4 67 40.3
A03p13630 Brassica napus HOM05D003788 ORTHO05D004633 8.9e-08 62.0 234 26.9
Cfa016964 Carpinus fangiana HOM05D003788 ORTHO05D004633 8.9e-08 62.0 115 33.9
Ciclev10007254m.g Citrus clementina HOM05D003788 ORTHO05D004633 8.9e-08 62.0 84 40.5
Gohir.A13G128300 Gossypium hirsutum HOM05D003788 ORTHO05D004633 8.9e-08 62.0 127 33.9
Manes.05G204500 Manihot esculenta HOM05D003788 ORTHO05D004633 8.9e-08 62.0 142 35.9
BcaC01g06410 Brassica carinata HOM05D003788 ORTHO05D004633 1.2e-07 61.6 236 27.1
COL.COLO4_07793 Corchorus olitorius HOM05D003788 ORTHO05D004633 1.2e-07 61.6 322 25.8
ECA240G4117 Erigeron canadensis HOM05D003788 ORTHO05D004633 1.2e-07 61.6 231 25.5
Manes.01G007100 Manihot esculenta HOM05D003788 ORTHO05D004633 1.2e-07 61.6 112 35.7
vmacro11644 Vaccinium macrocarpon HOM05D003788 ORTHO05D004633 1.2e-07 61.6 81 35.8
CDE05G2211 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 1.5e-07 61.2 47 48.9
FAN21G2445 Fragaria x ananassa HOM05D003788 ORTHO05D004633 1.5e-07 61.2 113 33.6
MSTRG.7044 Avicennia marina HOM05D003788 ORTHO05D004633 2.0e-07 60.8 260 25.4
Duzib213G0477 Durio zibethinus HOM05D003788 ORTHO05D004633 2.0e-07 60.8 129 33.3
PSO017G0918 Papaver somniferum HOM05D061670 ORTHO05D010879 2.0e-07 60.8 124 33.9
Sabra16G0320700 Salix brachista HOM05D003788 ORTHO05D004633 2.0e-07 60.8 135 29.6
EL10Ac4g07522 Beta vulgaris HOM05D003788 ORTHO05D004633 2.6e-07 60.5 75 36.0
C03p15980 Brassica napus HOM05D003788 ORTHO05D004633 2.6e-07 60.5 236 26.7
Thhalv10012702m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 2.6e-07 60.5 68 41.2
Potri.011G169100 Populus trichocarpa HOM05D003788 ORTHO05D004633 2.6e-07 60.5 135 32.6
Prupe.6G035800 Prunus persica HOM05D003788 ORTHO05D004633 2.6e-07 60.5 93 35.5
BraA03t10667Z Brassica rapa HOM05D003788 ORTHO05D004633 3.4e-07 60.1 234 26.5
MBI15_g35998_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 3.4e-07 60.1 129 33.3
AUR62017148 Chenopodium quinoa HOM05D003788 ORTHO05D004633 4.4e-07 59.7 75 34.7
Dinv19640 Davidia involucrata HOM05D003788 ORTHO05D004633 4.4e-07 59.7 132 30.3
Potri.001G472400 Populus trichocarpa HOM05D003788 ORTHO05D004633 4.4e-07 59.7 157 31.2
Sp6g18100 Schrenkiella parvula HOM05D003788 ORTHO05D004633 4.4e-07 59.7 74 41.9
CSS0022631 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 5.7e-07 59.3 261 24.5
DCAR_013754 Daucus carota HOM05D003788 ORTHO05D004633 5.7e-07 59.3 307 26.1
Migut.M01579 Erythranthe guttata HOM05D003788 ORTHO05D004633 5.7e-07 59.3 260 26.9
QL08p000460 Quercus lobata HOM05D003788 ORTHO05D004633 5.7e-07 59.3 117 32.5
Atru.chr2.3902 Acer truncatum HOM05D003788 ORTHO05D004633 7.5e-07 58.9 144 31.2
HanXRQChr17g0546861 Helianthus annuus HOM05D003788 ORTHO05D004633 7.5e-07 58.9 281 27.4
Oeu015274.1 Olea europaea HOM05D003788 ORTHO05D004633 7.5e-07 58.9 47 48.9
Rhsim06G0235500 Rhododendron simsii HOM05D003788 ORTHO05D004633 7.5e-07 58.9 262 24.4
A02p09250 Brassica napus HOM05D003788 ORTHO05D004633 9.8e-07 58.5 229 29.3
Gorai.013G147700 Gossypium raimondii HOM05D003788 ORTHO05D004633 9.8e-07 58.5 364 23.9
MD03G1043400 Malus domestica HOM05D003788 ORTHO05D004633 9.8e-07 58.5 89 34.8
BcaC01g06409 Brassica carinata HOM05D003788 ORTHO05D004633 1.3e-06 58.2 81 37.0
Cc05_g15760 Coffea canephora HOM05D003788 ORTHO05D004633 1.3e-06 58.2 154 29.2
BcaB01g04387 Brassica carinata HOM05D003788 ORTHO05D004633 1.7e-06 57.8 248 27.8
ClCG00G001230 Citrullus lanatus HOM05D003788 ORTHO05D004633 1.7e-06 57.8 48 47.9
ClCG10G003840 Citrullus lanatus HOM05D003788 ORTHO05D004633 1.7e-06 57.8 48 47.9
ClCG10G003960 Citrullus lanatus HOM05D003788 ORTHO05D004633 1.7e-06 57.8 48 47.9
Oeu052883.2 Olea europaea HOM05D003788 ORTHO05D004633 1.7e-06 57.8 166 27.7
Sabra11G0137700 Salix brachista HOM05D003788 ORTHO05D004633 1.7e-06 57.8 140 34.3
HanXRQChr03g0079411 Helianthus annuus HOM05D003788 ORTHO05D004633 2.2e-06 57.4 238 25.6
RcHm_v2.0_Chr5g0074531 Rosa chinensis HOM05D003788 ORTHO05D004633 2.2e-06 57.4 90 36.7
Zm00001eb079970 Zea mays HOM05D003788 ORTHO05D004633 2.2e-06 57.4 129 33.3
SEGI_04749 Sequoiadendron giganteum HOM05D003788 ORTHO05D004633 2.9e-06 57.0 62 43.5
Sed0020897 Sechium edule HOM05D003788 ORTHO05D004633 3.7e-06 56.6 50 44.0
Eucgr.F01984 Eucalyptus grandis HOM05D003788 ORTHO05D004633 4.9e-06 56.2 55 45.5
Gohir.D13G131700 Gossypium hirsutum HOM05D003788 ORTHO05D004633 4.9e-06 56.2 360 25.0
BcaB01g04386 Brassica carinata HOM05D003788 ORTHO05D004633 6.4e-06 55.8 46 50.0
Lsat_1_v5_gn_7_115701 Lactuca sativa HOM05D003788 ORTHO05D004633 6.4e-06 55.8 243 24.7
Os04g0471400 Oryza sativa ssp. japonica HOM05D003788 ORTHO05D004633 6.4e-06 55.8 113 35.4
A02p09290 Brassica napus HOM05D003788 ORTHO05D004633 8.3e-06 55.5 82 37.8
BraA02t05991Z Brassica rapa HOM05D003788 ORTHO05D004633 8.3e-06 55.5 82 37.8
CsaV3_3G003820 Cucumis sativus L. HOM05D003788 ORTHO05D004633 8.3e-06 55.5 48 47.9


User provided reference genes

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