Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p027298 Quercus lobata HOM05D005651 ORTHO05D006877 0.0e+00 2542.3 1298 100.0
Haze_11684 Corylus avellana HOM05D005651 ORTHO05D006877 0.0e+00 1868.6 1422 70.7
RcHm_v2.0_Chr4g0412451 Rosa chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1639.8 1306 65.5
RcHm_v2.0_Chr4g0412511 Rosa chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1636.3 1305 65.1
Prupe.1G172400 Prunus persica HOM05D005651 ORTHO05D006877 0.0e+00 1611.7 1313 65.4
FvH4_4g12860 Fragaria vesca HOM05D005651 ORTHO05D006877 0.0e+00 1587.0 1282 64.3
FAN12G2514 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1583.5 1309 63.3
CiPaw.01G113500 Carya illinoinensis HOM05D005651 ORTHO05D006877 0.0e+00 1573.9 1056 76.2
FAN17G0433 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1557.3 1306 62.7
MD04G1022200 Malus domestica HOM05D005651 ORTHO05D006877 0.0e+00 1549.3 1303 62.7
GSVIVG01031569001 Vitis vinifera HOM05D005651 ORTHO05D006877 0.0e+00 1486.1 1302 61.4
Thecc.04G191000 Theobroma cacao HOM05D005651 ORTHO05D006877 0.0e+00 1475.7 1303 59.7
Ciclev10004169m.g Citrus clementina HOM05D005651 ORTHO05D006877 0.0e+00 1473.8 1309 60.5
TAR362G0451 Trochodendron aralioides HOM05D005651 ORTHO05D006877 0.0e+00 1468.4 1312 59.8
Actinidia13837 Actinidia chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1448.3 1287 60.3
TPR.G18109 Trifolium pratense HOM05D005651 ORTHO05D006877 0.0e+00 1444.9 1289 58.0
Cpa.g.sc157.13 Carica papaya HOM05D005651 ORTHO05D006877 0.0e+00 1439.9 1284 59.8
FAN07G2778 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1436.8 1152 64.8
COL.COLO4_35960 Corchorus olitorius HOM05D005651 ORTHO05D006877 0.0e+00 1432.5 1301 57.8
Glyma.11G253600 Glycine max HOM05D005651 ORTHO05D006877 0.0e+00 1429.1 1282 57.3
Gohir.D02G018500 Gossypium hirsutum HOM05D005651 ORTHO05D006877 0.0e+00 1425.2 1308 57.5
CANSAT78G1330 Cannabis sativa HOM05D005651 ORTHO05D006877 0.0e+00 1424.1 1287 59.7
Sabra02G0177500 Salix brachista HOM05D005651 ORTHO05D006877 0.0e+00 1419.1 1274 59.5
Gohir.A02G016900 Gossypium hirsutum HOM05D005651 ORTHO05D006877 0.0e+00 1414.4 1308 56.8
Medtr3g084640 Medicago truncatula HOM05D005651 ORTHO05D006877 0.0e+00 1409.4 1300 57.5
Potri.002G232700 Populus trichocarpa HOM05D005651 ORTHO05D006877 0.0e+00 1408.7 1296 58.6
Gorai.005G022800 Gossypium raimondii HOM05D005651 ORTHO05D006877 0.0e+00 1398.3 1308 56.7
Lj6g0020014 Lotus japonicus HOM05D005651 ORTHO05D006877 0.0e+00 1389.4 1286 55.9
VMungo1383G2894 Vigna mungo HOM05D005651 ORTHO05D006877 0.0e+00 1389.0 1311 55.0
Ca_16431_v3 Cicer arietinum L. HOM05D005651 ORTHO05D006877 0.0e+00 1387.5 1313 56.0
Cfa008665 Carpinus fangiana HOM05D005651 ORTHO05D006877 0.0e+00 1373.6 918 78.1
Phvul.001G265000 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 0.0e+00 1348.6 1312 53.8
arahy.Tifrunner.gnm1.ann1.RD9PAU Arachis hypogaea HOM05D005651 ORTHO05D006877 0.0e+00 1343.2 1305 55.0
Duzib212G0903 Durio zibethinus HOM05D005651 ORTHO05D006877 0.0e+00 1335.9 1136 61.3
PGR083G1656 Punica granatum HOM05D005651 ORTHO05D006877 0.0e+00 1328.9 1319 55.2
arahy.Tifrunner.gnm1.ann1.9V91M6 Arachis hypogaea HOM05D005651 ORTHO05D006877 0.0e+00 1322.0 1304 54.8
Rhsim02G0090700 Rhododendron simsii HOM05D005651 ORTHO05D006877 0.0e+00 1310.8 1153 59.2
TWI56G0421 Tripterygium wilfordii HOM05D005651 ORTHO05D006877 0.0e+00 1306.2 1154 60.0
Nn8g41263 Nelumbo nucifera HOM05D005651 ORTHO05D006877 0.0e+00 1301.2 1304 53.7
Aqoxy2G04074 Aquilegia oxysepala HOM05D005651 ORTHO05D006877 0.0e+00 1299.3 1305 54.3
Cc03_g09140 Coffea canephora HOM05D005651 ORTHO05D006877 0.0e+00 1288.5 1285 53.3
Lj3C272T4 Lonicera japonica HOM05D005651 ORTHO05D006877 0.0e+00 1276.9 1331 54.3
arahy.Tifrunner.gnm1.ann1.4U9R65 Arachis hypogaea HOM05D005651 ORTHO05D006877 0.0e+00 1274.2 1322 52.9
PSO063G2404 Papaver somniferum HOM05D005651 ORTHO05D006877 0.0e+00 1271.9 1302 53.1
Sc25g0005740 Simmondsia chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1268.8 1305 52.6
Sed0004152 Sechium edule HOM05D005651 ORTHO05D006877 0.0e+00 1267.7 1317 53.5
ClCG08G003660 Citrullus lanatus HOM05D005651 ORTHO05D006877 0.0e+00 1260.4 1306 53.9
arahy.Tifrunner.gnm1.ann1.EYX4BI Arachis hypogaea HOM05D005651 ORTHO05D006877 0.0e+00 1254.6 1311 53.1
MBI11_g07399_MAGBIO Magnolia biondii HOM05D005651 ORTHO05D006877 0.0e+00 1246.5 1334 53.0
Manes.05G198800 Manihot esculenta HOM05D005651 ORTHO05D006877 0.0e+00 1230.7 1039 61.9
Lalb_Chr24g0394531 Lupinus albus HOM05D005651 ORTHO05D006877 0.0e+00 1230.3 1125 58.2
THA.LOC104808673 Tarenaya hassleriana HOM05D005651 ORTHO05D006877 0.0e+00 1229.5 1285 51.0
AT4G14180 Arabidopsis thaliana HOM05D005651 ORTHO05D006877 0.0e+00 1220.3 1300 50.4
Peaxi162Scf00017g02338 Petunia axillaris HOM05D005651 ORTHO05D006877 0.0e+00 1218.0 1286 50.9
Sopen03g033090 Solanum pennellii HOM05D005651 ORTHO05D006877 0.0e+00 1211.4 1283 50.5
Eucgr.H02630 Eucalyptus grandis HOM05D005651 ORTHO05D006877 0.0e+00 1198.0 1317 50.0
PSO017G3585 Papaver somniferum HOM05D005651 ORTHO05D006877 0.0e+00 1187.9 1175 54.1
Migut.G00953 Erythranthe guttata HOM05D005651 ORTHO05D006877 0.0e+00 1184.1 1295 50.5
HanXRQChr14g0436391 Helianthus annuus HOM05D005651 ORTHO05D006877 0.0e+00 1182.5 1307 50.7
AL7G42200 Arabidopsis lyrata HOM05D005651 ORTHO05D006877 0.0e+00 1180.2 1316 48.9
Sp5g13520 Schrenkiella parvula HOM05D005651 ORTHO05D006877 0.0e+00 1179.9 1319 49.5
Carub.0007s2821 Capsella rubella HOM05D005651 ORTHO05D006877 0.0e+00 1174.8 1313 49.9
Aa31LG9G3210 Aethionema arabicum HOM05D005651 ORTHO05D006877 0.0e+00 1166.4 1311 49.7
Solyc03g114040.3 Solanum lycopersicum HOM05D005651 ORTHO05D006877 0.0e+00 1165.2 1328 48.0
C03p35350 Brassica napus HOM05D005651 ORTHO05D006877 0.0e+00 1149.0 1281 48.7
BcaC01g04643 Brassica carinata HOM05D005651 ORTHO05D006877 0.0e+00 1148.7 1317 48.2
BolC3t15845H Brassica oleracea HOM05D005651 ORTHO05D006877 0.0e+00 1148.7 1317 48.2
Oeu050724.1 Olea europaea HOM05D005651 ORTHO05D006877 0.0e+00 1148.3 1154 53.5
Nitab4.5_0001422g0060 Nicotiana tabacum HOM05D005651 ORTHO05D006877 0.0e+00 1146.3 1290 49.1
SGA_v2.0_scaffold12G06118 Striga asiatica HOM05D005651 ORTHO05D006877 0.0e+00 1146.0 1293 48.5
BcaB01g02715 Brassica carinata HOM05D005651 ORTHO05D006877 0.0e+00 1144.4 1332 47.5
A03p29160 Brassica napus HOM05D005651 ORTHO05D006877 0.0e+00 1137.1 1299 48.1
Lsat_1_v5_gn_2_47921 Lactuca sativa HOM05D005651 ORTHO05D006877 0.0e+00 1135.9 1327 48.6
CAN.G781.41 Capsicum annuum HOM05D005651 ORTHO05D006877 0.0e+00 1116.3 1266 48.3
SalBow1G5228 Salvia bowleyana HOM05D005651 ORTHO05D006877 0.0e+00 1106.7 1294 48.1
CsaV3_6G003070 Cucumis sativus L. HOM05D005651 ORTHO05D006877 0.0e+00 1097.4 1123 53.3
SalBow1G5941 Salvia bowleyana HOM05D005651 ORTHO05D006877 0.0e+00 1093.2 1294 47.7
EL10Ac3g07437 Beta vulgaris HOM05D005651 ORTHO05D006877 0.0e+00 1085.1 1282 47.8
ATR0582G376 Amborella trichopoda HOM05D005651 ORTHO05D006877 0.0e+00 1084.3 1266 47.5
AUR62018536 Chenopodium quinoa HOM05D005651 ORTHO05D006877 0.0e+00 1078.9 1198 49.2
AUR62020881 Chenopodium quinoa HOM05D005651 ORTHO05D006877 8.9e-312 1074.7 1256 48.2
Thhalv10027320m.g Eutrema salsugineum HOM05D005651 ORTHO05D006877 3.3e-309 1065.4 1314 46.5
Atru.chr3.1765 Acer truncatum HOM05D005651 ORTHO05D006877 4.2e-304 1048.5 867 63.8
DCAR_026668 Daucus carota HOM05D005651 ORTHO05D006877 2.7e-303 1045.8 1281 48.0
Ah.04g149640 Amaranthus hybridus HOM05D005651 ORTHO05D006877 1.1e-280 970.7 1112 47.6
Dinv32168 Davidia involucrata HOM05D005651 ORTHO05D006877 1.5e-272 943.7 757 65.0
Nitab4.5_0009569g0040 Nicotiana tabacum HOM05D005651 ORTHO05D006877 1.5e-272 943.7 991 51.1
ECA238G0348 Erigeron canadensis HOM05D005651 ORTHO05D006877 1.1e-262 911.0 1213 44.8
SHI01044 Sapria himalayana HOM05D005651 ORTHO05D006877 1.3e-260 904.0 1052 48.4
Phvul.004G062100 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 1.9e-243 847.0 843 52.0
Os04g0347800 Oryza sativa ssp. japonica HOM05D005651 ORTHO05D006877 1.5e-240 837.4 1156 42.8
MELO3C026127.2 Cucumis melo HOM05D005651 ORTHO05D006877 2.0e-221 773.9 796 52.1
Lj3C268T6 Lonicera japonica HOM05D005651 ORTHO05D006877 9.6e-216 755.0 768 55.3
Zm00001eb389920 Zea mays HOM05D005651 ORTHO05D006877 1.0e-212 745.0 1011 41.8
SEGI_00340 Sequoiadendron giganteum HOM05D005651 ORTHO05D006877 1.1e-208 731.5 1307 37.3
unitig_748.g8008 Utricularia gibba HOM05D005651 ORTHO05D006877 6.9e-198 695.7 1048 39.9
Psat2g094320 Pisum sativum HOM05D005651 ORTHO05D006877 8.5e-180 635.6 591 55.5
CARHR220210 Cardamine hirsuta HOM05D005651 ORTHO05D006877 2.1e-178 630.9 683 50.7
vmacro15590 Vaccinium macrocarpon HOM05D005651 ORTHO05D006877 2.3e-169 600.9 718 49.2
Dinv32169 Davidia involucrata HOM05D005651 ORTHO05D006877 2.9e-156 557.4 464 63.6
CDE02G2388 Ceratophyllum demersum HOM05D005651 ORTHO05D006877 6.6e-148 529.6 638 46.6
Lj3A268T25 Lonicera japonica HOM05D005651 ORTHO05D006877 4.7e-146 523.5 499 57.7
CARHR220220 Cardamine hirsuta HOM05D005651 ORTHO05D006877 4.0e-145 520.4 655 45.3
Atru.chr3.1766 Acer truncatum HOM05D005651 ORTHO05D006877 6.8e-129 466.5 386 63.7
Phvul.006G051700 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 8.4e-127 459.5 488 52.3
Prupe.1G176200 Prunus persica HOM05D005651 ORTHO05D006877 9.6e-107 392.9 615 42.6
HPP92_024561 Vanilla planifolia HOM05D005651 ORTHO05D006877 3.2e-94 351.3 494 42.9
Psat2g094280 Pisum sativum HOM05D005651 ORTHO05D006877 2.1e-93 348.6 383 50.7
Mapoly0195s0003 Marchantia polymorpha HOM05D005651 ORTHO05D006877 9.7e-91 339.7 1323 26.6
PGSC0003DMG400024589 Solanum tuberosum HOM05D005651 ORTHO05D006877 1.4e-86 325.9 356 47.5
Pp3c15_15330 Physcomitrium patens HOM05D005651 ORTHO05D006877 7.4e-83 313.5 1288 25.2
HPP92_024560 Vanilla planifolia HOM05D005651 ORTHO05D006877 3.4e-80 304.7 377 46.2
HPP92_024556 Vanilla planifolia HOM05D005651 ORTHO05D006877 1.8e-73 282.3 378 41.8
Nitab4.5_0009569g0060 Nicotiana tabacum HOM05D005651 ORTHO05D006877 3.8e-55 221.5 290 43.4
Psat0s1368g0040 Pisum sativum HOM05D005651 ORTHO05D006877 1.2e-43 183.3 192 51.6
vmacro15591 Vaccinium macrocarpon HOM05D005651 ORTHO05D006877 1.7e-42 179.5 190 53.2
CSS0048714 Camellia sinensis var. sinensis HOM05D005651 ORTHO05D006877 1.1e-38 166.8 138 62.3
FAN22G0619 Fragaria x ananassa HOM05D005651 ORTHO05D006877 2.0e-35 156.0 128 63.3
SHI01039 Sapria himalayana HOM05D005651 ORTHO05D006877 3.2e-33 148.7 170 51.8
TWI56G0074 Tripterygium wilfordii HOM05D005651 ORTHO05D006877 6.2e-29 134.4 115 62.6
unitig_748.g8007 Utricularia gibba HOM05D005651 ORTHO05D006877 1.2e-24 120.2 210 34.3
Lalb_Chr24g0394541 Lupinus albus HOM05D005651 ORTHO05D006877 1.6e-24 119.8 150 50.7
BcaB01g02718 Brassica carinata HOM05D005651 ORTHO05D006877 5.1e-23 114.8 110 52.7
BraA03t12111Z Brassica rapa HOM05D005651 ORTHO05D006877 2.1e-21 109.4 138 47.8
Ah.04g149630 Amaranthus hybridus HOM05D005651 ORTHO05D006877 1.5e-19 103.2 130 50.0
Lj5P691T0 Lonicera japonica HOM05D005651 ORTHO05D006877 7.6e-19 100.9 117 47.0
TAR633G2085 Trochodendron aralioides HOM05D005651 ORTHO05D006877 9.9e-19 100.5 121 45.5
TPR.G28787 Trifolium pratense HOM05D005651 ORTHO05D006877 7.1e-17 94.4 101 44.6
Eucgr.F02519 Eucalyptus grandis HOM05D005651 ORTHO05D006877 3.5e-16 92.0 65 69.2
CBR_g39378 Chara braunii HOM05D005651 ORTHO05D006877 4.3e-14 85.1 244 25.4
SHI01042 Sapria himalayana HOM05D005651 ORTHO05D006877 3.8e-10 72.0 59 61.0


User provided reference genes

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