Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p026437 Quercus lobata HOM05D004237 ORTHO05D005002 5.4e-211 737.6 439 100.0
CiPaw.01G118000 Carya illinoinensis HOM05D004237 ORTHO05D005002 1.8e-134 483.4 447 66.9
Haze_11643 Corylus avellana HOM05D004237 ORTHO05D005002 2.5e-131 473.0 448 65.0
Cfa014954 Carpinus fangiana HOM05D004237 ORTHO05D005002 3.3e-128 462.6 448 62.7
Sabra16G0201600 Salix brachista HOM05D004237 ORTHO05D005002 7.0e-126 454.9 455 61.8
Manes.15G056100 Manihot esculenta HOM05D004237 ORTHO05D005002 1.5e-123 447.2 452 61.1
Ca_17976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 1.2e-122 444.1 453 59.8
Manes.03G145100 Manihot esculenta HOM05D004237 ORTHO05D005002 2.1e-122 443.4 452 60.2
Medtr8g085190 Medicago truncatula HOM05D004237 ORTHO05D005002 8.0e-122 441.4 447 62.2
Cpa.g.sc83.32 Carica papaya HOM05D004237 ORTHO05D005002 1.8e-121 440.3 451 62.1
Thecc.04G196500 Theobroma cacao HOM05D004237 ORTHO05D005002 2.6e-120 436.4 452 63.3
Sabra17G0051800 Salix brachista HOM05D004237 ORTHO05D005002 9.7e-120 434.5 454 61.9
Dinv27207 Davidia involucrata HOM05D004237 ORTHO05D005002 1.7e-119 433.7 443 60.7
Atru.chr4.1600 Acer truncatum HOM05D004237 ORTHO05D005002 2.2e-119 433.3 452 57.7
Lj4g0001711 Lotus japonicus HOM05D004237 ORTHO05D005002 6.3e-119 431.8 456 56.8
Potri.001G318600 Populus trichocarpa HOM05D004237 ORTHO05D005002 8.3e-119 431.4 455 62.4
Ciclev10004964m.g Citrus clementina HOM05D004237 ORTHO05D005002 1.2e-117 427.6 451 59.6
MD04G1016300 Malus domestica HOM05D004237 ORTHO05D005002 1.3e-116 424.1 469 53.9
VMungo0251G2499 Vigna mungo HOM05D004237 ORTHO05D005002 5.0e-116 422.2 451 59.0
CANSAT78G0306 Cannabis sativa HOM05D004237 ORTHO05D005002 1.1e-115 421.0 451 58.8
Actinidia11451 Actinidia chinensis HOM05D004237 ORTHO05D005002 1.5e-115 420.6 444 59.2
Potri.017G058200 Populus trichocarpa HOM05D004237 ORTHO05D005002 5.5e-115 418.7 454 58.1
Duzib212G0922 Durio zibethinus HOM05D004237 ORTHO05D005002 2.7e-114 416.4 451 60.3
arahy.Tifrunner.gnm1.ann1.BLV0FA Arachis hypogaea HOM05D004237 ORTHO05D005002 3.0e-113 412.9 459 54.2
arahy.Tifrunner.gnm1.ann1.T9JHLZ Arachis hypogaea HOM05D004237 ORTHO05D005002 3.0e-113 412.9 459 54.2
Phvul.003G050200 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 1.2e-112 411.0 450 59.1
MSTRG.21980 Avicennia marina HOM05D004237 ORTHO05D005002 2.0e-112 410.2 449 57.7
Actinidia28992 Actinidia chinensis HOM05D004237 ORTHO05D005002 3.4e-112 409.5 444 58.1
Dinv38185 Davidia involucrata HOM05D004237 ORTHO05D005002 5.7e-112 408.7 445 58.2
PGSC0003DMG400026424 Solanum tuberosum HOM05D004237 ORTHO05D005002 1.3e-111 407.5 449 57.9
Hma1.2p1_2958F.1_g330800 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 4.8e-111 405.6 464 58.6
Gohir.A10G128300 Gossypium hirsutum HOM05D004237 ORTHO05D005002 8.3e-111 404.8 451 61.4
Gorai.011G152800 Gossypium raimondii HOM05D004237 ORTHO05D005002 2.0e-109 400.2 449 59.2
Gohir.D10G137600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 1.0e-108 397.9 449 61.2
Oeu063463.1 Olea europaea HOM05D004237 ORTHO05D005002 3.8e-108 396.0 450 55.8
CSS0022501 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 2.5e-107 393.3 459 56.9
Prupe.1G163000 Prunus persica HOM05D004237 ORTHO05D005002 2.1e-106 390.2 453 55.2
Peaxi162Scf00047g00110 Petunia axillaris HOM05D004237 ORTHO05D005002 1.0e-105 387.9 442 53.6
DCAR_030819 Daucus carota HOM05D004237 ORTHO05D005002 5.2e-105 385.6 447 56.6
Lalb_Chr07g0186771 Lupinus albus HOM05D004237 ORTHO05D005002 8.9e-105 384.8 449 55.9
GSVIVG01021000001 Vitis vinifera HOM05D004237 ORTHO05D005002 2.0e-104 383.6 444 54.5
Oeu025033.1 Olea europaea HOM05D004237 ORTHO05D005002 2.6e-104 383.3 445 54.2
AUR62020847 Chenopodium quinoa HOM05D004237 ORTHO05D005002 3.4e-104 382.9 431 57.8
MD13G1282300 Malus domestica HOM05D004237 ORTHO05D005002 9.8e-104 381.3 462 51.9
Solyc09g092210.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 2.7e-101 373.2 447 55.0
Nitab4.5_0007828g0040 Nicotiana tabacum HOM05D004237 ORTHO05D005002 7.8e-101 371.7 444 54.3
Sopen09g035130 Solanum pennellii HOM05D004237 ORTHO05D005002 7.8e-101 371.7 447 54.8
CsaV3_2G011170 Cucumis sativus L. HOM05D004237 ORTHO05D005002 3.3e-99 366.3 446 55.4
Sc13g0000310 Simmondsia chinensis HOM05D004237 ORTHO05D005002 4.3e-99 365.9 441 52.4
MELO3C020354.2 Cucumis melo HOM05D004237 ORTHO05D005002 1.0e-97 361.3 446 54.7
ECA238G4613 Erigeron canadensis HOM05D004237 ORTHO05D005002 5.2e-97 359.0 439 51.0
FvH4_4g13400 Fragaria vesca HOM05D004237 ORTHO05D005002 5.2e-97 359.0 453 51.9
COL.COLO4_20213 Corchorus olitorius HOM05D004237 ORTHO05D005002 1.2e-96 357.8 445 49.2
Rhsim02G0061200 Rhododendron simsii HOM05D004237 ORTHO05D005002 1.2e-96 357.8 444 53.4
RhsimUnG0035800 Rhododendron simsii HOM05D004237 ORTHO05D005002 1.2e-96 357.8 444 53.4
CAN.G1565.17 Capsicum annuum HOM05D004237 ORTHO05D005002 2.0e-96 357.1 445 53.0
RcHm_v2.0_Chr4g0413771 Rosa chinensis HOM05D004237 ORTHO05D005002 2.6e-96 356.7 457 51.6
vmacro15560 Vaccinium macrocarpon HOM05D004237 ORTHO05D005002 5.8e-96 355.5 444 52.5
Sed0001983 Sechium edule HOM05D004237 ORTHO05D005002 1.7e-95 354.0 442 55.0
FAN12G1632 Fragaria x ananassa HOM05D004237 ORTHO05D005002 3.7e-95 352.8 448 51.6
FAN07G1461 Fragaria x ananassa HOM05D004237 ORTHO05D005002 2.1e-90 337.0 448 50.4
Aqoxy2G03968 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 3.9e-84 316.2 465 48.2
HanXRQChr15g0484241 Helianthus annuus HOM05D004237 ORTHO05D005002 1.1e-83 314.7 439 46.0
Glyma.08G110600 Glycine max HOM05D004237 ORTHO05D005002 4.3e-83 312.8 398 52.0
Glyma.05G153300 Glycine max HOM05D004237 ORTHO05D005002 1.2e-82 311.2 448 50.2
Eucgr.H02692 Eucalyptus grandis HOM05D004237 ORTHO05D005002 2.9e-79 300.1 451 46.8
Migut.N00416 Erythranthe guttata HOM05D004237 ORTHO05D005002 1.1e-78 298.1 440 47.5
TAR636G2161 Trochodendron aralioides HOM05D004237 ORTHO05D005002 8.6e-76 288.5 453 45.9
Lsat_1_v5_gn_2_45661 Lactuca sativa HOM05D004237 ORTHO05D005002 1.2e-74 284.6 452 44.9
CDE05G0646 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 2.4e-73 280.4 441 41.5
ATR0561G250 Amborella trichopoda HOM05D004237 ORTHO05D005002 2.2e-71 273.9 443 46.3
Psat7g073000 Pisum sativum HOM05D004237 ORTHO05D005002 4.9e-71 272.7 443 40.2
MBI11_g07416_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 1.2e-69 268.1 446 46.2
Nitab4.5_0000697g0020 Nicotiana tabacum HOM05D004237 ORTHO05D005002 8.4e-63 245.4 381 49.6
SGA_v2.0_scaffold31G12582 Striga asiatica HOM05D004237 ORTHO05D005002 1.7e-60 237.7 440 38.6
TPR.G11799 Trifolium pratense HOM05D004237 ORTHO05D005002 5.1e-60 236.1 217 55.8
SEGI_20207 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 6.7e-52 209.1 448 40.8
PSO017G6634 Papaver somniferum HOM05D004237 ORTHO05D005002 5.8e-48 196.1 448 42.2
unitig_45.g31537 Utricularia gibba HOM05D004237 ORTHO05D005002 5.5e-46 189.5 107 76.6
unitig_578.g16513 Utricularia gibba HOM05D004237 ORTHO05D005002 5.5e-46 189.5 107 76.6
unitig_45.g31538 Utricularia gibba HOM05D004237 ORTHO05D005002 7.6e-40 169.1 243 41.2
unitig_578.g16512 Utricularia gibba HOM05D004237 ORTHO05D005002 7.6e-40 169.1 243 41.2
HPP92_024243 Vanilla planifolia HOM05D004237 ORTHO05D005002 1.9e-38 164.5 449 33.4
SEGI_05374 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 1.0e-36 158.7 461 35.6
Mapoly0008s0013 Marchantia polymorpha HOM05D004237 ORTHO05D005002 1.3e-34 151.8 106 58.5
Cpa.g.sc118.40 Carica papaya HOM05D004237 ORTHO05D005002 4.8e-34 149.8 100 66.0
GSVIVG01030867001 Vitis vinifera HOM05D004237 ORTHO05D005002 4.8e-34 149.8 102 64.7
Manes.03G011500 Manihot esculenta HOM05D004237 ORTHO05D005002 1.1e-33 148.7 102 62.7
Sed0014224 Sechium edule HOM05D004237 ORTHO05D005002 1.1e-33 148.7 100 64.0
Sc11g0008610 Simmondsia chinensis HOM05D004237 ORTHO05D005002 1.1e-33 148.7 102 63.7
ClCG05G010910 Citrullus lanatus HOM05D004237 ORTHO05D005002 1.4e-33 148.3 100 64.0
Prupe.3G158400 Prunus persica HOM05D004237 ORTHO05D005002 1.8e-33 147.9 102 62.7
Rhsim08G0085800 Rhododendron simsii HOM05D004237 ORTHO05D005002 2.4e-33 147.5 100 63.0
HanXRQChr09g0262291 Helianthus annuus HOM05D004237 ORTHO05D005002 5.3e-33 146.4 102 60.8
MELO3C020294.2 Cucumis melo HOM05D004237 ORTHO05D005002 6.9e-33 146.0 100 62.0
CsaV3_3G021670 Cucumis sativus L. HOM05D004237 ORTHO05D005002 6.9e-33 146.0 100 62.0
Atru.chr4.1671 Acer truncatum HOM05D004237 ORTHO05D005002 9.0e-33 145.6 100 64.0
Gohir.D05G281200 Gossypium hirsutum HOM05D004237 ORTHO05D005002 9.0e-33 145.6 100 64.0
Gorai.009G294600 Gossypium raimondii HOM05D004237 ORTHO05D005002 9.0e-33 145.6 100 64.0
arahy.Tifrunner.gnm1.ann1.68W1N1 Arachis hypogaea HOM05D004237 ORTHO05D005002 1.2e-32 145.2 103 62.1
arahy.Tifrunner.gnm1.ann1.MQJ11K Arachis hypogaea HOM05D004237 ORTHO05D005002 1.2e-32 145.2 103 62.1
AUR62023243 Chenopodium quinoa HOM05D004237 ORTHO05D005002 1.2e-32 145.2 197 39.6
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 1.2e-32 145.2 103 61.2
CANSAT54G2538 Cannabis sativa HOM05D004237 ORTHO05D005002 1.5e-32 144.8 102 61.8
Cfa007846 Carpinus fangiana HOM05D004237 ORTHO05D005002 1.5e-32 144.8 102 61.8
Haze_14220 Corylus avellana HOM05D004237 ORTHO05D005002 1.5e-32 144.8 102 61.8
Potri.004G088000 Populus trichocarpa HOM05D004237 ORTHO05D005002 1.5e-32 144.8 100 62.0
Lsat_1_v5_gn_4_154701 Lactuca sativa HOM05D004237 ORTHO05D005002 3.4e-32 143.7 102 60.8
CiPaw.03G068200 Carya illinoinensis HOM05D004237 ORTHO05D005002 4.5e-32 143.3 100 64.0
CAN.G625.84 Capsicum annuum HOM05D004237 ORTHO05D005002 5.9e-32 142.9 102 60.8
PGR004G2154 Punica granatum HOM05D004237 ORTHO05D005002 5.9e-32 142.9 100 64.0
FvH4_7g06071 Fragaria vesca HOM05D004237 ORTHO05D005002 7.7e-32 142.5 102 60.8
FAN06G1641 Fragaria x ananassa HOM05D004237 ORTHO05D005002 7.7e-32 142.5 102 60.8
SGA_v2.0_scaffold149G36490 Striga asiatica HOM05D004237 ORTHO05D005002 7.7e-32 142.5 102 59.8
Dinv14873 Davidia involucrata HOM05D004237 ORTHO05D005002 1.0e-31 142.1 100 63.0
Eucgr.F02819 Eucalyptus grandis HOM05D004237 ORTHO05D005002 1.0e-31 142.1 102 61.8
RcHm_v2.0_Chr7g0221661 Rosa chinensis HOM05D004237 ORTHO05D005002 1.3e-31 141.7 102 60.8
Aqoxy5G01640 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 1.7e-31 141.4 100 62.0
Hma1.2p1_3512F.1_g336510 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 2.2e-31 141.0 100 62.0
DCAR_025876 Daucus carota HOM05D004237 ORTHO05D005002 2.9e-31 140.6 100 62.0
ECA232G1788 Erigeron canadensis HOM05D004237 ORTHO05D005002 2.9e-31 140.6 100 62.0
CDE09G1075 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 3.8e-31 140.2 100 62.0
Migut.H00265 Erythranthe guttata HOM05D004237 ORTHO05D005002 3.8e-31 140.2 102 60.8
TPR.G3499 Trifolium pratense HOM05D004237 ORTHO05D005002 3.8e-31 140.2 100 60.0
Actinidia17655 Actinidia chinensis HOM05D004237 ORTHO05D005002 6.5e-31 139.4 210 41.4
Glyma.02G247200 Glycine max HOM05D004237 ORTHO05D005002 1.1e-30 138.7 100 61.0
QL11p004173 Quercus lobata HOM05D004237 ORTHO05D005002 1.1e-30 138.7 102 57.8
CDE02G0048 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 1.4e-30 138.3 100 63.0
Lalb_Chr10g0104521 Lupinus albus HOM05D004237 ORTHO05D005002 1.4e-30 138.3 100 60.0
Oeu047420.1 Olea europaea HOM05D004237 ORTHO05D005002 1.9e-30 137.9 182 40.7
Phvul.008G233700 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 2.5e-30 137.5 100 60.0
LjContig00141g0018818 Lotus japonicus HOM05D004237 ORTHO05D005002 3.2e-30 137.1 100 62.0
SHI19441 Sapria himalayana HOM05D004237 ORTHO05D005002 3.2e-30 137.1 172 43.6
Nitab4.5_0002248g0060 Nicotiana tabacum HOM05D004237 ORTHO05D005002 7.2e-30 136.0 114 54.4
ATR0743G026 Amborella trichopoda HOM05D004237 ORTHO05D005002 9.4e-30 135.6 113 55.8
Medtr5g079680 Medicago truncatula HOM05D004237 ORTHO05D005002 1.6e-29 134.8 102 58.8
EL10Ac2g04487 Beta vulgaris HOM05D004237 ORTHO05D005002 2.1e-29 134.4 439 35.8
Ca_05866_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 2.1e-29 134.4 100 59.0
Ca_29976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 2.1e-29 134.4 100 59.0
TPR.G11942 Trifolium pratense HOM05D004237 ORTHO05D005002 2.7e-29 134.0 77 83.1
Cc07_g08200 Coffea canephora HOM05D004237 ORTHO05D005002 4.6e-29 133.3 427 32.6
Sabra04G0058600 Salix brachista HOM05D004237 ORTHO05D005002 4.6e-29 133.3 458 29.3
Gohir.A05G279600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 3.9e-28 130.2 457 33.7
Solyc02g091090.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 3.9e-28 130.2 420 30.2
Sopen02g035740 Solanum pennellii HOM05D004237 ORTHO05D005002 3.9e-28 130.2 420 30.0
SalBow3G4435 Salvia bowleyana HOM05D004237 ORTHO05D005002 8.8e-28 129.0 427 37.2
CSS0027261 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 1.1e-27 128.6 440 35.2
MBI08_g18909_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 1.1e-27 128.6 108 52.8
MD09G1261100 Malus domestica HOM05D004237 ORTHO05D005002 1.5e-27 128.3 458 33.4
SHI01026 Sapria himalayana HOM05D004237 ORTHO05D005002 2.5e-27 127.5 393 37.9
Psat2g041040 Pisum sativum HOM05D004237 ORTHO05D005002 5.7e-27 126.3 106 52.8
Nn3g18884 Nelumbo nucifera HOM05D004237 ORTHO05D005002 7.4e-27 125.9 435 34.7
Thecc.10G175300 Theobroma cacao HOM05D004237 ORTHO05D005002 7.4e-27 125.9 437 35.7
Duzib106G0201 Durio zibethinus HOM05D004237 ORTHO05D005002 9.7e-27 125.6 439 34.9
TAR633G2403 Trochodendron aralioides HOM05D004237 ORTHO05D005002 1.3e-26 125.2 431 34.3
Hund16204 Selenicereus undatus HOM05D004237 ORTHO05D005002 1.7e-26 124.8 447 31.1
CBR_g29388 Chara braunii HOM05D004237 ORTHO05D005002 8.2e-26 122.5 110 48.2
Lj6P390T29 Lonicera japonica HOM05D004237 ORTHO05D005002 1.6e-21 108.2 147 44.9
RcHm_v2.0_Chr1g0334211 Rosa chinensis HOM05D004237 ORTHO05D005002 2.2e-10 71.2 48 66.7
FvH4_4g13413 Fragaria vesca HOM05D004237 ORTHO05D196496 2.7e-08 64.3 209 37.3
Nitab4.5_0004399g0090 Nicotiana tabacum HOM05D004237 ORTHO05D005002 4.5e-08 63.5 45 62.2
AUR62023195 Chenopodium quinoa HOM05D004237 ORTHO05D005002 5.9e-08 63.2 45 62.2
RcHm_v2.0_Chr1g0333501 Rosa chinensis HOM05D004237 ORTHO05D005002 1.3e-07 62.0 45 62.2
Peaxi162Scf00003g00001 Petunia axillaris HOM05D004237 ORTHO05D005002 6.5e-07 59.7 45 57.8
Glyma.14G069000 Glycine max HOM05D004237 ORTHO05D005002 2.5e-06 57.8 45 60.0


User provided reference genes

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