Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p024041 Quercus lobata HOM05D002428 ORTHO05D005085 8.7e-210 733.4 375 100.0
CiPaw.01G122700 Carya illinoinensis HOM05D002428 ORTHO05D005085 6.7e-162 574.3 376 77.7
Haze_11595 Corylus avellana HOM05D002428 ORTHO05D005085 1.5e-161 573.2 375 79.5
Prupe.1G005000 Prunus persica HOM05D002428 ORTHO05D005085 3.4e-137 492.3 376 68.4
MD04G1005200 Malus domestica HOM05D002428 ORTHO05D005085 9.5e-132 474.2 367 66.2
MD07G1287300 Malus domestica HOM05D002428 ORTHO05D005085 9.5e-132 474.2 367 66.2
FAN12G1312 Fragaria x ananassa HOM05D002428 ORTHO05D005085 1.8e-130 469.9 374 66.8
MD04G1005300 Malus domestica HOM05D002428 ORTHO05D005085 2.0e-129 466.5 367 65.1
FvH4_4g00480 Fragaria vesca HOM05D002428 ORTHO05D005085 2.6e-129 466.1 374 66.3
RcHm_v2.0_Chr4g0385911 Rosa chinensis HOM05D002428 ORTHO05D005085 5.8e-129 464.9 369 66.7
Thecc.04G206400 Theobroma cacao HOM05D002428 ORTHO05D005085 3.3e-124 449.1 368 63.6
FAN22G0466 Fragaria x ananassa HOM05D002428 ORTHO05D005085 9.5e-124 447.6 371 63.9
Potri.001G049800 Populus trichocarpa HOM05D002428 ORTHO05D005085 3.6e-123 445.7 375 63.5
Sabra01G0034700 Salix brachista HOM05D002428 ORTHO05D005085 8.9e-122 441.0 376 63.0
Duzib151G0814 Durio zibethinus HOM05D002428 ORTHO05D005085 7.5e-121 438.0 368 64.1
Ciclev10005183m.g Citrus clementina HOM05D002428 ORTHO05D005085 1.7e-120 436.8 380 62.6
GSVIVG01021082001 Vitis vinifera HOM05D002428 ORTHO05D005085 3.7e-120 435.6 382 61.5
FAN17G2111 Fragaria x ananassa HOM05D002428 ORTHO05D005085 2.4e-119 433.0 415 59.3
Atru.chr4.1736 Acer truncatum HOM05D002428 ORTHO05D005085 9.2e-119 431.0 378 60.6
CSS0050051 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 3.5e-118 429.1 385 59.0
Manes.03G149000 Manihot esculenta HOM05D002428 ORTHO05D005085 1.3e-117 427.2 378 60.3
CSS0020338 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 5.1e-117 425.2 385 59.0
Gohir.A09G204000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 8.6e-117 424.5 368 61.4
RcHm_v2.0_Chr4g0385791 Rosa chinensis HOM05D002428 ORTHO05D005085 1.9e-116 423.3 340 66.2
Gohir.D09G197800 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.8e-115 419.5 368 60.6
TAR362G0527 Trochodendron aralioides HOM05D002428 ORTHO05D005085 3.6e-115 419.1 386 58.5
Potri.003G178400 Populus trichocarpa HOM05D002428 ORTHO05D005085 1.1e-114 417.5 375 60.3
Gorai.006G221300 Gossypium raimondii HOM05D002428 ORTHO05D005085 3.1e-114 416.0 368 59.8
Lj6g0025937 Lotus japonicus HOM05D002428 ORTHO05D005085 8.9e-114 414.5 379 58.6
Lalb_Chr20g0120151 Lupinus albus HOM05D002428 ORTHO05D005085 1.2e-113 414.1 375 59.5
Glyma.15G131900 Glycine max HOM05D002428 ORTHO05D005085 1.5e-113 413.7 376 58.8
Actinidia35873 Actinidia chinensis HOM05D002428 ORTHO05D005085 2.0e-113 413.3 385 59.5
Gohir.D10G143200 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.0e-113 413.3 368 59.8
Gohir.A02G023600 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.6e-113 412.9 368 59.5
Gorai.011G160000 Gossypium raimondii HOM05D002428 ORTHO05D005085 4.4e-113 412.1 368 59.5
CANSAT78G0072 Cannabis sativa HOM05D002428 ORTHO05D005085 3.7e-112 409.1 367 60.5
Glyma.09G025700 Glycine max HOM05D002428 ORTHO05D005085 3.7e-112 409.1 376 58.0
Gohir.A10G122900 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.1e-111 407.5 368 59.2
Dinv29583 Davidia involucrata HOM05D002428 ORTHO05D005085 1.6e-110 403.7 366 59.6
TPR.G26368 Trifolium pratense HOM05D002428 ORTHO05D005085 2.7e-110 402.9 377 57.3
Gohir.D02G031000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 3.5e-110 402.5 368 59.2
Gorai.005G034400 Gossypium raimondii HOM05D002428 ORTHO05D005085 7.8e-110 401.4 368 59.2
arahy.Tifrunner.gnm1.ann1.2WG9BE Arachis hypogaea HOM05D002428 ORTHO05D005085 3.1e-106 389.4 375 57.1
arahy.Tifrunner.gnm1.ann1.CV7WQS Arachis hypogaea HOM05D002428 ORTHO05D005085 5.2e-106 388.7 375 57.1
Nn1g07810 Nelumbo nucifera HOM05D002428 ORTHO05D005085 6.8e-106 388.3 384 56.8
Dinv38249 Davidia involucrata HOM05D002428 ORTHO05D005085 4.4e-105 385.6 329 62.3
Ca_00857_v3 Cicer arietinum L. HOM05D002428 ORTHO05D005085 2.2e-104 383.3 352 59.4
VMungo0540G1973 Vigna mungo HOM05D002428 ORTHO05D005085 2.9e-104 382.9 375 53.6
Phvul.006G126700 Phaseolus vulgaris HOM05D002428 ORTHO05D005085 3.8e-104 382.5 375 54.7
Eucgr.H02858 Eucalyptus grandis HOM05D002428 ORTHO05D005085 4.9e-104 382.1 380 55.3
Medtr2g030560 Medicago truncatula HOM05D002428 ORTHO05D005085 8.4e-104 381.3 377 56.2
PGR031G3462 Punica granatum HOM05D002428 ORTHO05D005085 5.4e-103 378.6 373 56.3
Aqoxy5G00065 Aquilegia oxysepala HOM05D002428 ORTHO05D005085 6.0e-102 375.2 372 54.8
Sabra03G0130800 Salix brachista HOM05D002428 ORTHO05D005085 2.3e-101 373.2 361 56.8
Lalb_Chr18g0058061 Lupinus albus HOM05D002428 ORTHO05D005085 3.0e-101 372.9 375 55.7
Duzib212G0991 Durio zibethinus HOM05D002428 ORTHO05D005085 1.5e-100 370.5 368 57.3
Nn3g19943 Nelumbo nucifera HOM05D002428 ORTHO05D005085 1.5e-100 370.5 384 53.9
COL.COLO4_20262 Corchorus olitorius HOM05D002428 ORTHO05D005085 1.9e-100 370.2 317 61.5
Manes.15G052100 Manihot esculenta HOM05D002428 ORTHO05D005085 8.1e-99 364.8 324 62.0
Rhsim09G0054900 Rhododendron simsii HOM05D002428 ORTHO05D005085 4.0e-98 362.5 338 57.7
BcaB03g14602 Brassica carinata HOM05D002428 ORTHO05D005085 3.2e-95 352.8 368 53.5
Sopen09g034710 Solanum pennellii HOM05D002428 ORTHO05D005085 9.3e-95 351.3 378 52.1
Thhalv10002585m.g Eutrema salsugineum HOM05D002428 ORTHO05D005085 1.6e-94 350.5 368 53.0
Sed0008750 Sechium edule HOM05D002428 ORTHO05D005085 2.1e-94 350.1 368 52.7
ClCG05G003400 Citrullus lanatus HOM05D002428 ORTHO05D005085 4.6e-94 349.0 366 51.6
Sed0022855 Sechium edule HOM05D002428 ORTHO05D005085 7.8e-94 348.2 366 51.4
PGSC0003DMG400029636 Solanum tuberosum HOM05D002428 ORTHO05D005085 1.7e-93 347.1 378 51.9
MSTRG.9822 Avicennia marina HOM05D002428 ORTHO05D005085 2.3e-93 346.7 369 52.0
Sc13g0000100 Simmondsia chinensis HOM05D002428 ORTHO05D005085 5.1e-93 345.5 381 51.4
Lsat_1_v5_gn_6_59860 Lactuca sativa HOM05D002428 ORTHO05D005085 1.1e-92 344.4 360 52.8
Psat7g008880 Pisum sativum HOM05D002428 ORTHO05D005085 1.5e-92 344.0 324 57.4
Eucgr.G01177 Eucalyptus grandis HOM05D002428 ORTHO05D005085 4.3e-92 342.4 368 52.2
Nitab4.5_0003750g0010 Nicotiana tabacum HOM05D002428 ORTHO05D005085 4.3e-92 342.4 372 51.6
THA.LOC104808717 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 5.6e-92 342.0 369 51.2
CsaV3_3G011070 Cucumis sativus L. HOM05D002428 ORTHO05D005085 9.6e-92 341.3 369 50.9
C01p39650 Brassica napus HOM05D002428 ORTHO05D005085 1.6e-91 340.5 369 52.6
BolC1t03917H Brassica oleracea HOM05D002428 ORTHO05D005085 1.6e-91 340.5 369 52.6
HanXRQChr15g0484251 Helianthus annuus HOM05D002428 ORTHO05D005085 3.6e-91 339.3 379 50.1
CAN.G500.14 Capsicum annuum HOM05D002428 ORTHO05D005085 8.1e-91 338.2 370 52.2
Sp3g21770 Schrenkiella parvula HOM05D002428 ORTHO05D005085 2.4e-90 336.7 368 51.1
AL3G39100 Arabidopsis lyrata HOM05D002428 ORTHO05D005085 4.0e-90 335.9 368 51.6
THA.LOC104804814 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 9.0e-90 334.7 372 48.4
SalBow8G0494 Salvia bowleyana HOM05D002428 ORTHO05D005085 1.2e-89 334.3 375 49.6
A01p31110 Brassica napus HOM05D002428 ORTHO05D005085 9.9e-89 331.3 369 52.0
BraA01t03235Z Brassica rapa HOM05D002428 ORTHO05D005085 9.9e-89 331.3 369 52.0
Oeu018226.1 Olea europaea HOM05D002428 ORTHO05D005085 9.9e-89 331.3 351 53.3
TAR633G2286 Trochodendron aralioides HOM05D002428 ORTHO05D005085 2.9e-88 329.7 365 52.3
BcaB06g26571 Brassica carinata HOM05D002428 ORTHO05D005085 6.4e-88 328.6 354 54.8
Cc03_g07640 Coffea canephora HOM05D002428 ORTHO05D005085 8.4e-88 328.2 375 51.2
AT3G24160 Arabidopsis thaliana HOM05D002428 ORTHO05D005085 1.9e-87 327.0 368 50.8
vmacro00484 Vaccinium macrocarpon HOM05D002428 ORTHO05D005085 1.9e-87 327.0 313 56.5
A03p43460 Brassica napus HOM05D002428 ORTHO05D005085 3.2e-87 326.2 371 51.5
BraA03t13484Z Brassica rapa HOM05D002428 ORTHO05D005085 4.2e-87 325.9 371 52.0
BolC3t17603H Brassica oleracea HOM05D002428 ORTHO05D005085 5.4e-87 325.5 371 51.8
A07p08320 Brassica napus HOM05D002428 ORTHO05D005085 1.6e-86 323.9 368 52.2
BraA07t28615Z Brassica rapa HOM05D002428 ORTHO05D005085 1.6e-86 323.9 368 52.2
BcaC06g35609 Brassica carinata HOM05D002428 ORTHO05D005085 2.1e-86 323.6 368 52.4
C07p12990 Brassica napus HOM05D002428 ORTHO05D005085 2.1e-86 323.6 368 52.4
BolC7t41792H Brassica oleracea HOM05D002428 ORTHO05D005085 2.1e-86 323.6 368 52.7
CARHR100040 Cardamine hirsuta HOM05D002428 ORTHO05D005085 2.7e-86 323.2 368 49.7
C03p53420 Brassica napus HOM05D002428 ORTHO05D005085 3.5e-86 322.8 371 51.8
Migut.G00669 Erythranthe guttata HOM05D002428 ORTHO05D005085 1.3e-85 320.9 372 49.2
Peaxi162Scf00047g00728 Petunia axillaris HOM05D002428 ORTHO05D005085 2.3e-85 320.1 371 50.4
BcaC01g03347 Brassica carinata HOM05D002428 ORTHO05D005085 5.1e-85 318.9 372 51.3
Nitab4.5_0004974g0030 Nicotiana tabacum HOM05D002428 ORTHO05D005085 6.7e-85 318.5 368 49.2
BcaB04g20405 Brassica carinata HOM05D002428 ORTHO05D005085 1.1e-84 317.8 369 51.2
ECA238G3133 Erigeron canadensis HOM05D002428 ORTHO05D005085 1.9e-84 317.0 329 53.2
Carub.0003s2434 Capsella rubella HOM05D002428 ORTHO05D005085 7.4e-84 315.1 368 50.3
PSO170G6100 Papaver somniferum HOM05D002428 ORTHO05D005085 6.9e-82 308.5 382 49.0
MBI10_g05704_MAGBIO Magnolia biondii HOM05D002428 ORTHO05D005085 1.2e-81 307.8 374 46.5
EL10Ac3g07490 Beta vulgaris HOM05D002428 ORTHO05D005085 7.6e-81 305.1 376 49.5
Psat1g166480 Pisum sativum HOM05D002428 ORTHO05D005085 7.6e-81 305.1 293 56.7
Lsat_1_v5_gn_2_45560 Lactuca sativa HOM05D002428 ORTHO05D005085 1.3e-80 304.3 363 47.1
DCAR_026601 Daucus carota HOM05D002428 ORTHO05D005085 4.2e-79 299.3 307 53.1
PSO674G0088 Papaver somniferum HOM05D002428 ORTHO05D005085 1.6e-78 297.4 402 45.8
Aa31LG8G10690 Aethionema arabicum HOM05D002428 ORTHO05D005085 2.1e-78 297.0 332 50.3
SGA_v2.0_scaffold72G24051 Striga asiatica HOM05D002428 ORTHO05D005085 1.3e-77 294.3 379 46.7
Actinidia25627 Actinidia chinensis HOM05D002428 ORTHO05D005085 1.6e-75 287.3 331 51.1
AUR62020812 Chenopodium quinoa HOM05D002428 ORTHO05D005085 4.0e-74 282.7 349 47.0
unitig_26.g9776 Utricularia gibba HOM05D002428 ORTHO05D005085 6.9e-74 282.0 352 46.0
CDE09G0695 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 3.8e-72 276.2 381 40.9
CDE11G0336 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 3.5e-70 269.6 358 42.7
MELO3C006320.2 Cucumis melo HOM05D002428 ORTHO05D005085 1.3e-67 261.2 293 48.5
Zm00001eb038510 Zea mays HOM05D002428 ORTHO05D005085 6.9e-66 255.4 374 40.9
ATR0736G031 Amborella trichopoda HOM05D002428 ORTHO05D005085 5.0e-64 249.2 355 42.0
Os08g0567000 Oryza sativa ssp. japonica HOM05D002428 ORTHO05D005085 9.4e-63 245.0 351 40.7
AUR62032922 Chenopodium quinoa HOM05D002428 ORTHO05D005085 1.1e-58 231.5 282 47.5
Cpa.g.sc1744.1 Carica papaya HOM05D002428 ORTHO05D005085 2.8e-51 206.8 199 57.3
HPP92_020844 Vanilla planifolia HOM05D002428 ORTHO05D005085 2.8e-51 206.8 382 37.2
SEGI_17850 Sequoiadendron giganteum HOM05D002428 ORTHO05D005085 3.1e-50 203.4 334 38.3
Cpa.g.sc59.124 Carica papaya HOM05D002428 ORTHO05D005085 7.2e-39 165.6 130 64.6
Gohir.D01G133000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.8e-34 151.0 137 55.5
Gorai.011G166500 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.7e-32 144.4 139 51.8
Lj3A543T20 Lonicera japonica HOM05D002428 ORTHO05D005085 2.2e-32 144.1 129 59.7
SMO367G0336 Selaginella moellendorffii HOM05D002428 ORTHO05D005085 3.8e-32 143.3 385 32.7
Gohir.D07G140050 Gossypium hirsutum HOM05D002428 ORTHO05D005085 7.2e-31 139.0 130 54.6
Gorai.007G194000 Gossypium raimondii HOM05D002428 ORTHO05D005085 8.0e-30 135.6 126 54.0
Lalb_Chr15g0088821 Lupinus albus HOM05D002428 ORTHO05D005085 8.0e-30 135.6 101 62.4
Mapoly0023s0054 Marchantia polymorpha HOM05D002428 ORTHO05D005085 1.4e-26 124.8 381 30.7
Ah.01g001410 Amaranthus hybridus HOM05D002428 ORTHO05D005085 4.5e-25 119.8 251 32.3
CBR_g18980 Chara braunii HOM05D002428 ORTHO05D005085 4.5e-25 119.8 381 29.9
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 7.7e-25 119.0 157 40.8
Ah.01g001400 Amaranthus hybridus HOM05D002428 ORTHO05D005085 1.0e-24 118.6 201 39.3
Pp3c14_7560 Physcomitrium patens HOM05D002428 ORTHO05D005085 5.6e-23 112.8 372 26.9
Nitab4.5_0001063g0080 Nicotiana tabacum HOM05D002389 ORTHO05D005085 2.6e-20 104.0 245 30.6
Pp3c10_8060 Physcomitrium patens HOM05D002428 ORTHO05D005085 3.4e-20 103.6 379 25.6
Nitab4.5_0000081g0050 Nicotiana tabacum HOM05D002428 ORTHO05D005085 6.6e-16 89.4 139 36.0
Glyma.15G198202 Glycine max HOM05D002428 ORTHO05D005085 6.2e-14 82.8 64 64.1
Rhsim09G0053800 Rhododendron simsii HOM05D002428 ORTHO05D005085 1.0e-13 82.0 89 48.3
Rhsim09G0054400 Rhododendron simsii HOM05D002428 ORTHO05D005085 1.0e-13 82.0 89 48.3
Solyc05g044540.3 Solanum lycopersicum HOM05D008774 ORTHO05D010951 8.3e-11 72.4 71 47.9
PSO017G6711 Papaver somniferum HOM05D002428 ORTHO05D005085 4.1e-10 70.1 99 44.4
Cre17.g708350 Chlamydomonas reinhardtii HOM05D002428 ORTHO05D005085 6.6e-08 62.8 372 23.1
Oeu041684.1 Olea europaea HOM05D002428 ORTHO05D005085 5.6e-07 59.7 69 49.3
Oeu003801.3 Olea europaea HOM05D000258 ORTHO05D000153 1.6e-06 58.2 69 49.3
Oeu020092.1 Olea europaea HOM05D002428 ORTHO05D005085 4.7e-06 56.6 69 46.4
Oeu061488.3 Olea europaea HOM05D001416 ORTHO05D002549 4.7e-06 56.6 55 50.9


User provided reference genes

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