Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p023750 Quercus lobata HOM05D002282 ORTHO05D002403 1.4e-115 419.9 246 100.0
QL05p027693 Quercus lobata HOM05D002282 ORTHO05D002403 3.6e-79 298.9 272 69.1
CiPaw.01G244200 Carya illinoinensis HOM05D002282 ORTHO05D002403 1.1e-75 287.3 266 67.3
Potri.003G060900 Populus trichocarpa HOM05D002282 ORTHO05D002403 9.4e-72 274.2 235 68.1
Thecc.06G073800 Theobroma cacao HOM05D002282 ORTHO05D002403 1.2e-71 273.9 250 65.2
Duzib235G0185 Durio zibethinus HOM05D002282 ORTHO05D002403 1.6e-71 273.5 240 67.5
CiPaw.02G154700 Carya illinoinensis HOM05D002282 ORTHO05D002403 2.7e-71 272.7 265 65.7
Haze_05779 Corylus avellana HOM05D002282 ORTHO05D002403 2.3e-70 269.6 241 68.9
Potri.001G173300 Populus trichocarpa HOM05D002282 ORTHO05D002403 2.3e-70 269.6 237 67.5
Gohir.A05G124900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 1.2e-69 267.3 240 66.2
Cpa.g.sc336.4 Carica papaya HOM05D002282 ORTHO05D002403 2.6e-69 266.2 238 64.7
Sabra01G0138500 Salix brachista HOM05D002282 ORTHO05D002403 5.7e-69 265.0 239 65.7
RcHm_v2.0_Chr5g0081181 Rosa chinensis HOM05D002282 ORTHO05D002403 3.1e-67 259.2 240 66.7
Gohir.D05G125900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 7.0e-67 258.1 240 65.4
Prupe.6G012700 Prunus persica HOM05D002282 ORTHO05D002403 7.0e-67 258.1 240 65.4
TWI18G0202 Tripterygium wilfordii HOM05D002282 ORTHO05D002403 9.2e-67 257.7 234 65.8
Gorai.009G129900 Gossypium raimondii HOM05D002282 ORTHO05D002403 5.9e-66 255.0 240 65.0
Nn2g11949 Nelumbo nucifera HOM05D002282 ORTHO05D002403 2.9e-65 252.7 234 63.2
RcHm_v2.0_Chr1g0331681 Rosa chinensis HOM05D002282 ORTHO05D002403 6.6e-65 251.5 240 65.4
Atru.chr1.3116 Acer truncatum HOM05D002282 ORTHO05D002403 1.1e-64 250.8 209 65.6
TAR383G0492 Trochodendron aralioides HOM05D002282 ORTHO05D002403 1.1e-64 250.8 220 67.7
COL.COLO4_23901 Corchorus olitorius HOM05D002282 ORTHO05D002403 9.5e-64 247.7 240 62.5
CAN.G407.112 Capsicum annuum HOM05D002282 ORTHO05D002403 2.1e-63 246.5 237 62.9
Phvul.010G153600 Phaseolus vulgaris HOM05D002282 ORTHO05D002403 2.8e-63 246.1 228 65.4
Dinv30569 Davidia involucrata HOM05D002282 ORTHO05D002403 3.6e-63 245.7 238 62.6
Sopen03g035310 Solanum pennellii HOM05D002282 ORTHO05D002403 1.0e-62 244.2 238 63.0
Peaxi162Scf00274g00850 Petunia axillaris HOM05D002282 ORTHO05D002403 1.4e-62 243.8 236 61.4
PGSC0003DMG400000602 Solanum tuberosum HOM05D002282 ORTHO05D002403 3.0e-62 242.7 237 61.6
Solyc03g116380.4 Solanum lycopersicum HOM05D002282 ORTHO05D002403 4.0e-62 242.3 238 62.6
TPR.G3896 Trifolium pratense HOM05D002282 ORTHO05D002403 5.2e-62 241.9 225 65.3
MBI04_g10418_MAGBIO Magnolia biondii HOM05D002282 ORTHO05D002403 1.2e-61 240.7 226 63.7
MD15G1387900 Malus domestica HOM05D002282 ORTHO05D002403 3.4e-61 239.2 238 61.8
FAN11G0586 Fragaria x ananassa HOM05D002282 ORTHO05D002403 5.7e-61 238.4 202 68.8
FAN16G2654 Fragaria x ananassa HOM05D002282 ORTHO05D002403 7.5e-61 238.0 235 61.7
Lalb_Chr04g0262501 Lupinus albus HOM05D002282 ORTHO05D002403 1.3e-60 237.3 222 64.9
COL.COLO4_12890 Corchorus olitorius HOM05D002282 ORTHO05D002403 1.7e-60 236.9 201 67.2
FAN25G3025 Fragaria x ananassa HOM05D002282 ORTHO05D002403 2.2e-60 236.5 238 60.5
CSS0048718 Camellia sinensis var. sinensis HOM05D002282 ORTHO05D002403 2.9e-60 236.1 222 61.7
Nitab4.5_0002257g0110 Nicotiana tabacum HOM05D002282 ORTHO05D002403 8.3e-60 234.6 236 61.9
Sed0027048 Sechium edule HOM05D002282 ORTHO05D002403 2.4e-59 233.0 212 64.6
Nitab4.5_0006574g0100 Nicotiana tabacum HOM05D002282 ORTHO05D002403 3.2e-59 232.6 236 61.0
Sed0003011 Sechium edule HOM05D002282 ORTHO05D002403 3.2e-59 232.6 208 63.5
Hund00550 Selenicereus undatus HOM05D002282 ORTHO05D002403 3.2e-59 232.6 237 60.8
Ciclev10025131m.g Citrus clementina HOM05D002282 ORTHO05D002403 5.4e-59 231.9 244 57.4
PGR031G0824 Punica granatum HOM05D002282 ORTHO05D002403 9.2e-59 231.1 243 61.3
Actinidia15798 Actinidia chinensis HOM05D002282 ORTHO05D002403 2.7e-58 229.6 219 62.1
DCAR_025482 Daucus carota HOM05D002282 ORTHO05D002403 7.8e-58 228.0 240 57.5
Cc04_g04050 Coffea canephora HOM05D002282 ORTHO05D002403 1.3e-57 227.3 235 59.1
Lj3g0004862 Lotus japonicus HOM05D002282 ORTHO05D002403 1.3e-57 227.3 251 57.8
GSVIVG01017246001 Vitis vinifera HOM05D002282 ORTHO05D002403 1.3e-57 227.3 201 66.7
arahy.Tifrunner.gnm1.ann1.NNZF0Z Arachis hypogaea HOM05D002282 ORTHO05D002403 2.3e-57 226.5 239 60.7
SalBow1G0696 Salvia bowleyana HOM05D002282 ORTHO05D002403 3.0e-57 226.1 223 58.7
VMungo0331G0533 Vigna mungo HOM05D002282 ORTHO05D002403 3.0e-57 226.1 228 61.8
Eucgr.I02097 Eucalyptus grandis HOM05D002282 ORTHO05D002403 3.9e-57 225.7 210 64.8
Sabra03G0035200 Salix brachista HOM05D002282 ORTHO05D002403 5.0e-57 225.3 256 58.6
MSTRG.1400 Avicennia marina HOM05D002282 ORTHO05D002403 6.6e-57 224.9 223 60.1
Oeu045971.1 Olea europaea HOM05D002282 ORTHO05D002403 1.1e-56 224.2 215 62.8
CANSAT56G4088 Cannabis sativa HOM05D002282 ORTHO05D002403 1.9e-56 223.4 200 62.5
Lj5A68G60 Lonicera japonica HOM05D002282 ORTHO05D002403 3.6e-55 219.2 239 54.8
Rhsim08G0216500 Rhododendron simsii HOM05D002282 ORTHO05D002403 1.0e-54 217.6 232 58.2
Medtr4g011300 Medicago truncatula HOM05D002282 ORTHO05D002403 1.8e-54 216.9 250 56.8
SGA_v2.0_scaffold52G18905 Striga asiatica HOM05D002282 ORTHO05D002403 8.9e-54 214.5 235 56.2
Aqoxy7G02081 Aquilegia oxysepala HOM05D002282 ORTHO05D002403 3.4e-53 212.6 223 58.7
Psat7g255200 Pisum sativum HOM05D002282 ORTHO05D002403 1.7e-52 210.3 236 57.2
CsaV3_7G032650 Cucumis sativus L. HOM05D002282 ORTHO05D002403 4.9e-52 208.8 208 60.1
arahy.Tifrunner.gnm1.ann1.CV1QS0 Arachis hypogaea HOM05D002282 ORTHO05D002403 1.1e-51 207.6 239 57.3
Ah.01g020860 Amaranthus hybridus HOM05D000121 ORTHO05D000102 1.4e-51 207.2 231 56.7
Actinidia01770 Actinidia chinensis HOM05D002282 ORTHO05D002403 4.1e-51 205.7 187 62.6
CARHR015980 Cardamine hirsuta HOM05D002282 ORTHO05D002403 4.1e-51 205.7 240 57.1
Migut.C01081 Erythranthe guttata HOM05D002282 ORTHO05D002403 7.0e-51 204.9 215 55.3
A08p31580 Brassica napus HOM05D002282 ORTHO05D002403 1.2e-50 204.1 240 56.7
BraA08t35080Z Brassica rapa HOM05D002282 ORTHO05D002403 1.2e-50 204.1 240 56.7
HanXRQChr04g0096701 Helianthus annuus HOM05D002282 ORTHO05D002403 1.2e-50 204.1 193 60.1
HanXRQChr04g0097161 Helianthus annuus HOM05D002282 ORTHO05D002403 1.2e-50 204.1 193 60.1
HanXRQChr04g0097221 Helianthus annuus HOM05D002282 ORTHO05D002403 1.2e-50 204.1 193 60.1
Lsat_1_v5_gn_1_33521 Lactuca sativa HOM05D002282 ORTHO05D002403 1.6e-50 203.8 236 55.1
PSO339G0191 Papaver somniferum HOM05D002282 ORTHO05D002403 1.6e-50 203.8 226 57.1
EL10Ac9g21953 Beta vulgaris HOM05D000121 ORTHO05D000102 6.0e-50 201.8 238 54.6
C08p17190 Brassica napus HOM05D002282 ORTHO05D002403 3.9e-49 199.1 217 57.6
BolC8t49348H Brassica oleracea HOM05D002282 ORTHO05D002403 3.9e-49 199.1 217 57.6
Os01g0649000 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 5.0e-49 198.7 223 54.3
MELO3C023398.2 Cucumis melo HOM05D002282 ORTHO05D002403 1.5e-48 197.2 179 63.1
ECA247G0800 Erigeron canadensis HOM05D002282 ORTHO05D002403 1.9e-48 196.8 231 54.1
Zm00001eb294740 Zea mays HOM05D002282 ORTHO05D002403 1.9e-48 196.8 223 53.8
Sp1g13790 Schrenkiella parvula HOM05D002282 ORTHO05D002403 2.5e-48 196.4 240 55.0
Carub.0001s1522 Capsella rubella HOM05D002282 ORTHO05D002403 3.3e-48 196.1 240 55.0
Hund06582 Selenicereus undatus HOM05D002282 ORTHO05D002403 4.3e-48 195.7 184 60.9
ClCG09G002680 Citrullus lanatus HOM05D002282 ORTHO05D002403 9.5e-48 194.5 264 49.6
AUR62011569 Chenopodium quinoa HOM05D002282 ORTHO05D002403 1.2e-47 194.1 183 59.0
BcaC07g38789 Brassica carinata HOM05D002282 ORTHO05D002403 1.6e-47 193.7 219 55.7
THA.LOC104812495 Tarenaya hassleriana HOM05D002282 ORTHO05D002403 1.1e-46 191.0 248 52.8
BcaB03g13061 Brassica carinata HOM05D002282 ORTHO05D002403 1.4e-46 190.7 199 58.3
Thhalv10008433m.g Eutrema salsugineum HOM05D002282 ORTHO05D002403 1.4e-46 190.7 240 55.0
PSO170G0153 Papaver somniferum HOM05D002282 ORTHO05D002403 2.3e-46 189.9 212 55.7
PSO782G5325 Papaver somniferum HOM05D002282 ORTHO05D002403 3.1e-46 189.5 174 62.6
AT1G15420 Arabidopsis thaliana HOM05D002282 ORTHO05D002403 1.2e-45 187.6 239 51.9
Aa31LG3G13660 Aethionema arabicum HOM05D002282 ORTHO05D002403 3.4e-45 186.0 224 55.8
A06p11480 Brassica napus HOM05D002282 ORTHO05D002403 4.4e-45 185.7 239 52.3
Os12g0634800 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 7.5e-45 184.9 223 51.1
BraA06t24325Z Brassica rapa HOM05D002282 ORTHO05D002403 1.9e-43 180.3 223 52.5
C05p13600 Brassica napus HOM05D002282 ORTHO05D002403 2.4e-43 179.9 239 51.0
BolC5t30096H Brassica oleracea HOM05D002282 ORTHO05D002403 2.4e-43 179.9 239 51.0
vmacro18959 Vaccinium macrocarpon HOM05D002282 ORTHO05D002403 5.4e-43 178.7 248 51.2
Lj3g0012512 Lotus japonicus HOM05D002282 ORTHO05D002403 7.1e-43 178.3 151 70.2
C08p44950 Brassica napus HOM05D002282 ORTHO05D002403 1.6e-42 177.2 185 58.9
Glyma.08G210000 Glycine max HOM05D002282 ORTHO05D002403 2.1e-42 176.8 200 56.0
HPP92_021532 Vanilla planifolia HOM05D002282 ORTHO05D002403 2.1e-42 176.8 224 50.0
AL1G27540 Arabidopsis lyrata HOM05D002282 ORTHO05D002403 3.5e-42 176.0 238 50.4
CDE07G0270 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 3.5e-42 176.0 226 50.9
BcaC07g41500 Brassica carinata HOM05D002282 ORTHO05D002403 6.0e-42 175.3 240 50.8
HPP92_021486 Vanilla planifolia HOM05D002282 ORTHO05D002403 7.8e-42 174.9 168 58.3
SHI18081 Sapria himalayana HOM05D002282 ORTHO05D002403 1.3e-41 174.1 211 50.7
Duzib192G0585 Durio zibethinus HOM05D002282 ORTHO05D002403 3.9e-41 172.6 120 75.0
BolC8t52042H Brassica oleracea HOM05D002282 ORTHO05D002403 8.6e-41 171.4 236 50.0
TPR.G8058 Trifolium pratense HOM05D002282 ORTHO05D002403 1.2e-39 167.5 150 65.3
AUR62016386 Chenopodium quinoa HOM05D002282 ORTHO05D002403 5.2e-38 162.2 148 61.5
ATR0580G098 Amborella trichopoda HOM05D002282 ORTHO05D002403 2.0e-37 160.2 208 48.1
Sc12g0008870 Simmondsia chinensis HOM05D002282 ORTHO05D002403 2.6e-37 159.8 157 60.5
unitig_747.g21506 Utricularia gibba HOM05D002282 ORTHO05D002403 2.6e-37 159.8 214 49.1
BcaB03g14539 Brassica carinata HOM05D002282 ORTHO05D002403 5.8e-37 158.7 162 59.9
Glyma.07G032500 Glycine max HOM05D002282 ORTHO05D002403 2.2e-36 156.8 201 52.2
MD15G1388000 Malus domestica HOM05D002282 ORTHO05D002403 6.4e-36 155.2 164 58.5
A09p61400 Brassica napus HOM05D002282 ORTHO05D002403 1.1e-35 154.5 151 58.3
Glyma.13G363200 Glycine max HOM05D002282 ORTHO05D002403 1.1e-35 154.5 200 52.5
HanXRQChr00c0540g0575621 Helianthus annuus HOM05D002282 ORTHO05D002403 4.1e-35 152.5 140 62.9
FAN21G1567 Fragaria x ananassa HOM05D002282 ORTHO05D002403 3.9e-33 146.0 211 51.2
BcaC05g25485 Brassica carinata HOM05D002282 ORTHO05D002403 2.1e-31 140.2 141 58.2
MD14G1090800 Malus domestica HOM05D002282 ORTHO05D002403 2.4e-30 136.7 239 43.1
Ca_20422_v3 Cicer arietinum L. HOM05D002282 ORTHO05D002403 1.5e-24 117.5 250 40.0
FvH4_3g44480 Fragaria vesca HOM05D002282 ORTHO05D002403 7.3e-24 115.2 114 59.6
Manes.04G116700 Manihot esculenta HOM05D002282 ORTHO05D002403 5.3e-22 109.0 115 58.3
Glyma.15G010600 Glycine max HOM05D002282 ORTHO05D002403 4.5e-21 105.9 110 59.1
BraA09t41511Z Brassica rapa HOM05D002282 ORTHO05D002403 1.4e-19 100.9 124 54.8
HanXRQChr04g0097171 Helianthus annuus HOM05D004669 ORTHO05D005767 9.3e-19 98.2 66 78.8
BraA09t41510Z Brassica rapa HOM05D002282 ORTHO05D002403 7.9e-18 95.1 115 54.8
SEGI_26113 Sequoiadendron giganteum HOM05D002282 ORTHO05D002403 8.7e-17 91.7 128 47.7
CDE06G0942 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 1.9e-16 90.5 102 54.9
Pp3c7_70 Physcomitrium patens HOM05D002282 ORTHO05D002403 4.8e-15 85.9 220 33.6
Mapoly0078s0006 Marchantia polymorpha HOM05D002282 ORTHO05D002403 1.1e-14 84.7 190 32.1
AagrBONN_evm.TU.Sc2ySwM_362.229 Anthoceros agrestis HOM05D002282 ORTHO05D002403 1.2e-13 81.3 161 35.4
MD12G1094800 Malus domestica HOM05D002282 ORTHO05D002403 1.7e-12 77.4 62 71.0
TPR.G40368 Trifolium pratense HOM05D004806 ORTHO05D005397 1.9e-11 73.9 83 59.0
MD12G1094900 Malus domestica HOM05D002282 ORTHO05D002403 6.0e-10 68.9 94 44.7
CBR_g57080 Chara braunii HOM05D002282 ORTHO05D002403 1.6e-07 60.8 202 30.7
Glyma.14G118600 Glycine max HOM05D002282 ORTHO05D002403 2.1e-07 60.5 70 54.3
ClCG06G004860 Citrullus lanatus HOM05D002282 ORTHO05D002403 3.7e-07 59.7 124 35.5
CsaV3_6G022650 Cucumis sativus L. HOM05D002282 ORTHO05D002403 1.4e-06 57.8 113 32.7
MELO3C021295.2 Cucumis melo HOM05D002282 ORTHO05D002403 3.1e-06 56.6 97 36.1
Migut.G00119 Erythranthe guttata HOM05D002282 ORTHO05D002403 6.9e-06 55.5 140 29.3
RcHm_v2.0_Chr4g0423831 Rosa chinensis HOM05D002282 ORTHO05D002403 6.9e-06 55.5 148 28.4
SMO361G0163 Selaginella moellendorffii HOM05D002282 ORTHO05D002403 6.9e-06 55.5 184 29.9
Lj3A826G75 Lonicera japonica HOM05D002282 ORTHO05D002403 9.0e-06 55.1 98 33.7


User provided reference genes

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