Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p023220 Quercus lobata HOM05D005047 ORTHO05D006540 5.6e-43 177.2 87 100.0
CiPaw.01G126600 Carya illinoinensis HOM05D005047 ORTHO05D006540 8.9e-41 169.9 86 94.2
Medtr1g047390 Medicago truncatula HOM05D005047 ORTHO05D006540 1.2e-40 169.5 86 96.5
Ca_11862_v3 Cicer arietinum L. HOM05D005047 ORTHO05D006540 2.0e-40 168.7 86 95.3
Psat6g048720 Pisum sativum HOM05D005047 ORTHO05D006540 3.4e-40 167.9 86 95.3
Glyma.10G125100 Glycine max HOM05D005047 ORTHO05D006540 4.4e-40 167.5 86 94.2
VMungo0720G0344 Vigna mungo HOM05D005047 ORTHO05D006540 9.8e-40 166.4 86 93.0
Phvul.007G236950 Phaseolus vulgaris HOM05D005047 ORTHO05D006540 1.3e-39 166.0 86 93.0
CANSAT78G0753 Cannabis sativa HOM05D005047 ORTHO05D006540 2.9e-39 164.9 87 90.8
CANSAT78G2209 Cannabis sativa HOM05D005047 ORTHO05D006540 2.9e-39 164.9 87 90.8
Thhalv10026260m.g Eutrema salsugineum HOM05D005047 ORTHO05D006540 2.9e-39 164.9 86 90.7
Glyma.20G077400 Glycine max HOM05D005047 ORTHO05D006540 2.9e-39 164.9 86 93.0
RcHm_v2.0_Chr4g0396911 Rosa chinensis HOM05D005047 ORTHO05D006540 2.9e-39 164.9 84 94.0
CsaV3_3G011290 Cucumis sativus L. HOM05D005047 ORTHO05D006540 3.7e-39 164.5 84 94.0
Prupe.1G060800 Prunus persica HOM05D005047 ORTHO05D006540 3.7e-39 164.5 85 91.8
PGR142G1511 Punica granatum HOM05D005047 ORTHO05D006540 3.7e-39 164.5 86 93.0
Lalb_Chr01g0010841 Lupinus albus HOM05D005047 ORTHO05D006540 4.9e-39 164.1 86 93.0
Haze_11554 Corylus avellana HOM05D005047 ORTHO05D006540 6.4e-39 163.7 86 91.9
TWI73G0442 Tripterygium wilfordii HOM05D005047 ORTHO05D006540 6.4e-39 163.7 86 91.9
AL7G42780 Arabidopsis lyrata HOM05D005047 ORTHO05D006540 8.3e-39 163.3 85 90.6
BcaB02g08656 Brassica carinata HOM05D005047 ORTHO05D006540 8.3e-39 163.3 85 90.6
Lj6g0004838 Lotus japonicus HOM05D005047 ORTHO05D006540 8.3e-39 163.3 86 93.0
Sp7g11500 Schrenkiella parvula HOM05D005047 ORTHO05D006540 8.3e-39 163.3 85 90.6
Aa31LG9G3930 Aethionema arabicum HOM05D005047 ORTHO05D006540 1.1e-38 162.9 85 90.6
PSO782G5131 Papaver somniferum HOM05D005047 ORTHO05D006540 1.1e-38 162.9 86 91.9
Potri.001G052400 Populus trichocarpa HOM05D005047 ORTHO05D006540 1.1e-38 162.9 86 90.7
Ciclev10005905m.g Citrus clementina HOM05D005047 ORTHO05D006540 1.4e-38 162.5 84 94.0
MELO3C031602.2 Cucumis melo HOM05D005047 ORTHO05D006540 1.9e-38 162.2 81 97.5
AT4G13720 Arabidopsis thaliana HOM05D005047 ORTHO05D006540 3.2e-38 161.4 85 89.4
C04p42210 Brassica napus HOM05D005047 ORTHO05D006540 3.2e-38 161.4 85 89.4
DCAR_002273 Daucus carota HOM05D005047 ORTHO05D006540 3.2e-38 161.4 87 90.8
PSO478G4795 Papaver somniferum HOM05D005047 ORTHO05D006540 3.2e-38 161.4 84 92.9
Sed0007809 Sechium edule HOM05D005047 ORTHO05D006540 3.2e-38 161.4 84 92.9
Sopen09g034350 Solanum pennellii HOM05D005047 ORTHO05D006540 3.2e-38 161.4 87 89.7
PGSC0003DMG400029615 Solanum tuberosum HOM05D005047 ORTHO05D006540 3.2e-38 161.4 87 89.7
FAN12G1457 Fragaria x ananassa HOM05D005047 ORTHO05D006540 4.1e-38 161.0 81 96.3
CSS0002501 Camellia sinensis var. sinensis HOM05D005047 ORTHO05D006540 5.4e-38 160.6 85 91.8
Eucgr.H00094 Eucalyptus grandis HOM05D005047 ORTHO05D006540 7.0e-38 160.2 86 90.7
AL5G12130 Arabidopsis lyrata HOM05D005047 ORTHO05D006540 9.2e-38 159.8 85 88.2
Solyc09g091420.4 Solanum lycopersicum HOM05D005047 ORTHO05D006540 9.2e-38 159.8 87 88.5
THA.LOC104808728 Tarenaya hassleriana HOM05D005047 ORTHO05D006540 9.2e-38 159.8 86 88.4
ClCG05G003600 Citrullus lanatus HOM05D005047 ORTHO05D006540 1.2e-37 159.5 81 95.1
Cc03_g07220 Coffea canephora HOM05D005047 ORTHO05D006540 1.2e-37 159.5 87 88.5
GSVIVG01029046001 Vitis vinifera HOM05D005047 ORTHO05D006540 1.6e-37 159.1 87 92.0
FAN07G0410 Fragaria x ananassa HOM05D005047 ORTHO05D006540 2.0e-37 158.7 81 95.1
Nitab4.5_0010267g0010 Nicotiana tabacum HOM05D005047 ORTHO05D006540 2.0e-37 158.7 84 91.7
EL10Ac3g06787 Beta vulgaris HOM05D005047 ORTHO05D006540 2.7e-37 158.3 84 89.3
FvH4_4g05750 Fragaria vesca HOM05D005047 ORTHO05D006540 2.7e-37 158.3 80 96.2
Potri.003G175800 Populus trichocarpa HOM05D005047 ORTHO05D006540 3.5e-37 157.9 86 86.0
Dinv38281 Davidia involucrata HOM05D005047 ORTHO05D006540 4.6e-37 157.5 84 90.5
TAR633G1642 Trochodendron aralioides HOM05D005047 ORTHO05D006540 4.6e-37 157.5 86 90.7
AUR62032663 Chenopodium quinoa HOM05D005047 ORTHO05D006540 6.0e-37 157.1 81 93.8
AUR62035305 Chenopodium quinoa HOM05D005047 ORTHO05D006540 6.0e-37 157.1 81 93.8
Os10g0457500 Oryza sativa ssp. japonica HOM05D005047 ORTHO05D006540 6.0e-37 157.1 86 88.4
Thecc.04G211900 Theobroma cacao HOM05D005047 ORTHO05D006540 1.0e-36 156.4 83 89.2
Hund19253 Selenicereus undatus HOM05D005047 ORTHO05D006540 1.3e-36 156.0 81 93.8
BcaC02g09395 Brassica carinata HOM05D005047 ORTHO05D006540 1.7e-36 155.6 82 90.2
A04p08470 Brassica napus HOM05D005047 ORTHO05D006540 1.7e-36 155.6 82 90.2
BolC4t25799H Brassica oleracea HOM05D005047 ORTHO05D006540 1.7e-36 155.6 82 90.2
BraA04t16537Z Brassica rapa HOM05D005047 ORTHO05D006540 1.7e-36 155.6 82 90.2
Sabra03G0128700 Salix brachista HOM05D005047 ORTHO05D006540 1.7e-36 155.6 83 90.4
Cpa.g.sc59.91 Carica papaya HOM05D005047 ORTHO05D006540 3.0e-36 154.8 82 90.2
Zm00001eb046670 Zea mays HOM05D005047 ORTHO05D006540 3.0e-36 154.8 86 87.2
Ah.13g075240 Amaranthus hybridus HOM05D005047 ORTHO05D006540 3.9e-36 154.5 84 88.1
MSTRG.21943 Avicennia marina HOM05D005047 ORTHO05D006540 3.9e-36 154.5 83 89.2
Gorai.006G219600 Gossypium raimondii HOM05D005047 ORTHO05D006540 3.9e-36 154.5 83 86.7
Sc13g0002770 Simmondsia chinensis HOM05D005047 ORTHO05D006540 3.9e-36 154.5 84 85.7
COL.COLO4_34082 Corchorus olitorius HOM05D005047 ORTHO05D006540 5.0e-36 154.1 86 86.0
Duzib212G0386 Durio zibethinus HOM05D005047 ORTHO05D006540 5.0e-36 154.1 86 84.9
Migut.N00337 Erythranthe guttata HOM05D005047 ORTHO05D006540 5.0e-36 154.1 83 89.2
vmacro00514 Vaccinium macrocarpon HOM05D005047 ORTHO05D006540 8.6e-36 153.3 82 91.5
Gohir.D09G196200 Gossypium hirsutum HOM05D005047 ORTHO05D006540 1.1e-35 152.9 83 86.7
Gohir.A09G202200 Gossypium hirsutum HOM05D005047 ORTHO05D006540 1.9e-35 152.1 83 86.7
TAR636G1612 Trochodendron aralioides HOM05D005047 ORTHO05D006540 3.3e-35 151.4 86 87.2
HanXRQChr01g0022691 Helianthus annuus HOM05D005047 ORTHO05D006540 4.3e-35 151.0 85 87.1
Manes.15G048800 Manihot esculenta HOM05D005047 ORTHO05D006540 1.6e-34 149.1 86 82.6
ECA248G2813 Erigeron canadensis HOM05D005047 ORTHO05D006540 3.6e-34 147.9 85 85.9
Pp3c16_19640 Physcomitrium patens HOM05D005047 ORTHO05D006540 3.6e-34 147.9 83 84.3
Manes.03G152700 Manihot esculenta HOM05D005047 ORTHO05D006540 1.4e-33 146.0 86 82.6
SalBow3G2150 Salvia bowleyana HOM05D005047 ORTHO05D006540 1.4e-33 146.0 79 89.9
Hma1.2p1_0903F.1_g235140 Hydrangea macrophylla HOM05D005047 ORTHO05D006540 4.0e-33 144.4 81 86.4
CDE04G3429 Ceratophyllum demersum HOM05D005047 ORTHO05D006540 6.8e-33 143.7 79 84.8
Mapoly0026s0018 Marchantia polymorpha HOM05D005047 ORTHO05D006540 6.8e-33 143.7 87 79.3
HPP92_015205 Vanilla planifolia HOM05D005047 ORTHO05D006540 8.9e-33 143.3 82 81.7
unitig_749.g13975 Utricularia gibba HOM05D005047 ORTHO05D006540 4.4e-32 141.0 93 76.3
Aa31LG9G3940 Aethionema arabicum HOM05D005047 ORTHO05D006540 1.4e-30 136.0 79 81.0
Lj6A611T47 Lonicera japonica HOM05D005047 ORTHO05D006540 1.4e-30 136.0 87 80.5
AagrBONN_evm.TU.Sc2ySwM_344.3277 Anthoceros agrestis HOM05D005047 ORTHO05D006540 1.9e-30 135.6 83 77.1
SMO367G0232 Selaginella moellendorffii HOM05D005047 ORTHO05D006540 1.9e-30 135.6 80 80.0
Dinv29555 Davidia involucrata HOM05D005047 ORTHO05D006540 2.4e-30 135.2 80 87.5
SGA_v2.0_scaffold2G00831 Striga asiatica HOM05D005047 ORTHO05D006540 7.0e-30 133.7 103 70.9
Lsat_1_v5_gn_0_4860 Lactuca sativa HOM05D005047 ORTHO05D006540 2.3e-28 128.6 102 67.6
TPR.G10100 Trifolium pratense HOM05D005047 ORTHO05D006540 5.1e-28 127.5 64 93.8
SHI24117 Sapria himalayana HOM05D005047 ORTHO05D006540 1.2e-26 122.9 80 76.2
MCO04G006 Micromonas commoda HOM05D005047 ORTHO05D006540 1.3e-23 112.8 84 65.5
Nitab4.5_0010728g0010 Nicotiana tabacum HOM05D005047 ORTHO05D006540 8.3e-23 110.2 84 70.2
Cre02.g095089 Chlamydomonas reinhardtii HOM05D005047 ORTHO05D006540 3.2e-22 108.2 87 63.2
Nn3g19880 Nelumbo nucifera HOM05D005047 ORTHO05D006540 1.2e-21 106.3 59 91.5
Sed0007961 Sechium edule HOM05D005047 ORTHO05D006540 1.0e-20 103.2 71 73.2
Oeu006715.2 Olea europaea HOM05D005047 ORTHO05D006540 8.6e-20 100.1 54 92.6
Carub.0007s2874 Capsella rubella HOM05D005047 ORTHO05D006540 3.3e-19 98.2 47 95.7
PRCOL_00006994 Prasinoderma coloniale HOM05D005047 ORTHO05D006540 7.3e-19 97.1 80 61.2
Cfa024488 Carpinus fangiana HOM05D005047 ORTHO05D006540 9.5e-19 96.7 81 60.5
ATR0088G035 Amborella trichopoda HOM05D005047 ORTHO05D006540 2.6e-16 88.6 47 85.1
Actinidia37393 Actinidia chinensis HOM05D005047 ORTHO05D006540 3.4e-16 88.2 90 57.8
CAN.G500.97 Capsicum annuum HOM05D005047 ORTHO05D006540 7.6e-16 87.0 43 93.0
Cre13.g568950 Chlamydomonas reinhardtii HOM05D005047 ORTHO05D006540 4.2e-14 81.3 69 59.4
TAR633G2043 Trochodendron aralioides HOM05D004282 ORTHO05D006540 6.0e-13 77.4 43 88.4
TPR.G40557 Trifolium pratense HOM05D005047 ORTHO05D006540 7.8e-13 77.0 40 95.0
arahy.Tifrunner.gnm1.ann1.BK86JE Arachis hypogaea HOM05D005047 ORTHO05D006540 3.9e-12 74.7 44 86.4
Zm00001eb086240 Zea mays HOM05D005047 ORTHO05D006540 3.9e-12 74.7 40 85.0
Peaxi162Scf00047g01312 Petunia axillaris HOM05D005047 ORTHO05D006540 5.1e-12 74.3 54 72.2
Glyma.12G173400 Glycine max HOM05D005047 ORTHO05D006540 8.7e-12 73.6 60 68.3
MBI07_g19553_MAGBIO Magnolia biondii HOM05D005047 ORTHO05D006540 1.3e-10 69.7 59 66.1
Aqoxy2G03810 Aquilegia oxysepala HOM05D005047 ORTHO05D006540 3.6e-10 68.2 81 49.4
Duzib268G0889 Durio zibethinus HOM05D005047 ORTHO05D006540 3.6e-10 68.2 83 44.6
FvH4_5g32911 Fragaria vesca HOM05D005047 ORTHO05D006540 3.6e-10 68.2 33 93.9
FvH4_6g44040 Fragaria vesca HOM05D005047 ORTHO05D006540 3.6e-10 68.2 33 93.9
FAN01G1709 Fragaria x ananassa HOM05D005047 ORTHO05D006540 1.2e-08 63.2 31 93.5
FAN26G2286 Fragaria x ananassa HOM05D005047 ORTHO05D006540 2.0e-08 62.4 34 88.2
FAN27G1012 Fragaria x ananassa HOM05D029863 ORTHO05D006540 7.6e-08 60.5 30 93.3
Zm00001eb102100 Zea mays HOM05D005047 ORTHO05D006540 1.3e-07 59.7 27 88.9
Zm00001eb377030 Zea mays HOM05D005047 ORTHO05D006540 1.3e-07 59.7 27 88.9
CsaV3_6G019130 Cucumis sativus L. HOM05D005047 ORTHO05D006540 1.7e-07 59.3 31 87.1


User provided reference genes

Program Settings