Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p022506 Quercus lobata HOM05D001391 ORTHO05D005432 2.0e-187 659.1 362 100.0
QL03p072323 Quercus lobata HOM05D001391 ORTHO05D005432 4.6e-184 647.9 362 93.6
QL03p071791 Quercus lobata HOM05D001391 ORTHO05D005432 2.3e-183 645.6 362 93.6
QL03p071836 Quercus lobata HOM05D001391 ORTHO05D005432 3.0e-183 645.2 362 94.2
QL03p071994 Quercus lobata HOM05D001391 ORTHO05D005432 1.6e-181 639.4 362 93.6
QL03p072246 Quercus lobata HOM05D001391 ORTHO05D005432 2.1e-181 639.0 388 87.4
QL03p072348 Quercus lobata HOM05D001391 ORTHO05D005432 6.1e-176 620.9 361 88.9
QL03p071709 Quercus lobata HOM05D001391 ORTHO05D005432 1.8e-172 609.4 362 90.6
CiPaw.06G092300 Carya illinoinensis HOM05D001391 ORTHO05D005432 6.7e-167 590.9 325 90.5
QL03p071961 Quercus lobata HOM05D001391 ORTHO05D005432 3.8e-162 575.1 362 89.8
Potri.010G158700 Populus trichocarpa HOM05D001391 ORTHO05D005432 7.9e-160 567.4 325 88.0
Sabra10G0120500 Salix brachista HOM05D001391 ORTHO05D005432 3.9e-159 565.1 362 80.9
Manes.01G028100 Manihot esculenta HOM05D001391 ORTHO05D005432 1.1e-158 563.5 325 86.5
RcHm_v2.0_Chr4g0438441 Rosa chinensis HOM05D001391 ORTHO05D005432 5.7e-158 561.2 325 87.1
FvH4_4g30104 Fragaria vesca HOM05D001391 ORTHO05D005432 3.7e-157 558.5 325 86.5
FAN07G1596 Fragaria x ananassa HOM05D001391 ORTHO05D005432 4.8e-157 558.1 328 85.7
MD13G1063100 Malus domestica HOM05D001391 ORTHO05D005432 5.3e-156 554.7 364 82.1
MD16G1061600 Malus domestica HOM05D001391 ORTHO05D005432 7.0e-156 554.3 363 79.1
FAN17G2247 Fragaria x ananassa HOM05D001391 ORTHO05D002605 1.2e-155 553.5 325 86.2
MELO3C011425.2 Cucumis melo HOM05D001391 ORTHO05D005432 2.0e-155 552.7 361 78.4
PGR102G1705 Punica granatum HOM05D001391 ORTHO05D005432 3.5e-155 552.0 324 86.1
Sed0003297 Sechium edule HOM05D001391 ORTHO05D005432 4.5e-155 551.6 359 79.1
Ciclev10031905m.g Citrus clementina HOM05D001391 ORTHO05D005432 5.9e-155 551.2 323 84.8
Eucgr.B03154 Eucalyptus grandis HOM05D001391 ORTHO05D005432 7.7e-155 550.8 322 85.7
Duzib248G0196 Durio zibethinus HOM05D001391 ORTHO05D005432 5.0e-154 548.1 322 84.5
Sed0027135 Sechium edule HOM05D001391 ORTHO05D005432 5.0e-154 548.1 361 78.1
Prupe.1G286500 Prunus persica HOM05D001391 ORTHO05D005432 8.5e-154 547.4 360 80.6
TWI31G1273 Tripterygium wilfordii HOM05D001391 ORTHO05D005432 3.2e-153 545.4 320 84.7
Thecc.02G331500 Theobroma cacao HOM05D001391 ORTHO05D005432 4.2e-153 545.0 319 85.3
Atru.chr11.1633 Acer truncatum HOM05D001391 ORTHO05D005432 1.2e-152 543.5 360 77.8
Lj4g0006249 Lotus japonicus HOM05D001391 ORTHO05D005432 1.6e-152 543.1 328 82.9
GSVIVG01012214001 Vitis vinifera HOM05D001391 ORTHO05D005432 3.6e-152 542.0 325 81.8
Lj3C1030G23 Lonicera japonica HOM05D001391 ORTHO05D005432 6.1e-152 541.2 319 83.4
QL03p071737 Quercus lobata HOM05D001391 ORTHO05D005432 3.0e-151 538.9 337 85.8
arahy.Tifrunner.gnm1.ann1.52K398 Arachis hypogaea HOM05D001391 ORTHO05D005432 5.2e-151 538.1 328 82.0
Sopen05g007170 Solanum pennellii HOM05D001391 ORTHO05D005432 2.0e-150 536.2 317 83.3
arahy.Tifrunner.gnm1.ann1.G55KBL Arachis hypogaea HOM05D001391 ORTHO05D005432 2.6e-150 535.8 328 81.7
SGA_v2.0_scaffold16G07780 Striga asiatica HOM05D001391 ORTHO05D005432 4.4e-150 535.0 325 81.5
CANSAT64G0915 Cannabis sativa HOM05D001391 ORTHO05D005432 5.7e-150 534.6 324 81.5
Lalb_Chr05g0219941 Lupinus albus HOM05D001391 ORTHO05D005432 5.7e-150 534.6 320 84.7
Oeu048144.1 Olea europaea HOM05D001391 ORTHO05D005432 9.7e-150 533.9 320 82.8
Haze_11913 Corylus avellana HOM05D001391 ORTHO05D005432 4.8e-149 531.6 291 90.7
FAN22G1389 Fragaria x ananassa HOM05D001391 ORTHO05D005432 6.3e-149 531.2 314 85.7
THA.LOC104805193 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 6.3e-149 531.2 325 82.5
COL.COLO4_27891 Corchorus olitorius HOM05D001391 ORTHO05D005432 3.1e-148 528.9 325 80.6
Psat7g134560 Pisum sativum HOM05D001391 ORTHO05D005432 3.1e-148 528.9 325 82.2
CSS0007431 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 5.3e-148 528.1 325 80.3
CSS0028231 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 5.3e-148 528.1 325 80.3
Ca_18800_v3 Cicer arietinum L. HOM05D001391 ORTHO05D005432 9.1e-148 527.3 329 80.9
Glyma.20G025600 Glycine max HOM05D001391 ORTHO05D005432 9.1e-148 527.3 320 82.5
BcaB07g30667 Brassica carinata HOM05D001391 ORTHO05D005432 3.5e-147 525.4 325 81.2
DCAR_007192 Daucus carota HOM05D001391 ORTHO05D005432 3.5e-147 525.4 321 81.3
Actinidia16169 Actinidia chinensis HOM05D001391 ORTHO05D005432 1.0e-146 523.9 320 80.9
Medtr4g083100 Medicago truncatula HOM05D001391 ORTHO05D005432 1.0e-146 523.9 329 80.5
THA.LOC104824058 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 1.0e-146 523.9 315 82.5
A09p24460 Brassica napus HOM05D001391 ORTHO05D005432 1.3e-146 523.5 325 80.9
BraA09t38039Z Brassica rapa HOM05D001391 ORTHO05D005432 1.7e-146 523.1 325 80.9
BcaC03g17224 Brassica carinata HOM05D001391 ORTHO05D005432 2.2e-146 522.7 325 80.6
C02p51560 Brassica napus HOM05D001391 ORTHO05D005432 2.2e-146 522.7 325 80.6
BolC2t11243H Brassica oleracea HOM05D001391 ORTHO05D005432 2.2e-146 522.7 325 80.6
VMungo0251G0716 Vigna mungo HOM05D001391 ORTHO05D005432 2.2e-146 522.7 346 77.7
BcaC04g21485 Brassica carinata HOM05D001391 ORTHO05D005432 3.8e-146 521.9 325 80.6
C09p31260 Brassica napus HOM05D001391 ORTHO05D005432 3.8e-146 521.9 325 80.6
BolC9t55982H Brassica oleracea HOM05D001391 ORTHO05D005432 3.8e-146 521.9 325 80.6
Sp2g14420 Schrenkiella parvula HOM05D001391 ORTHO05D005432 6.5e-146 521.2 325 80.3
TAR629G1471 Trochodendron aralioides HOM05D001391 ORTHO05D005432 8.5e-146 520.8 356 73.9
TAR629G2660 Trochodendron aralioides HOM05D001391 ORTHO05D005432 8.5e-146 520.8 356 73.9
AL5G13280 Arabidopsis lyrata HOM05D001391 ORTHO05D005432 1.1e-145 520.4 321 81.3
TPR.G34031 Trifolium pratense HOM05D001391 ORTHO05D005432 1.1e-145 520.4 329 79.3
Thhalv10004477m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 1.9e-145 519.6 325 80.3
Cc11_g12040 Coffea canephora HOM05D001391 ORTHO05D005432 2.5e-145 519.2 324 79.9
CAN.G616.39 Capsicum annuum HOM05D001391 ORTHO05D005432 3.2e-145 518.8 316 82.0
Dinv34072 Davidia involucrata HOM05D001391 ORTHO05D005432 3.2e-145 518.8 320 80.3
Aa31LG2G7090 Aethionema arabicum HOM05D001391 ORTHO05D005432 7.2e-145 517.7 323 80.8
Ah.02g126880 Amaranthus hybridus HOM05D001391 ORTHO05D005432 7.2e-145 517.7 320 79.7
AT2G03510 Arabidopsis thaliana HOM05D001391 ORTHO05D005432 7.2e-145 517.7 321 80.7
Carub.0005s0265 Capsella rubella HOM05D001391 ORTHO05D005432 2.1e-144 516.2 321 80.7
HanXRQChr15g0477081 Helianthus annuus HOM05D001391 ORTHO05D005432 2.1e-144 516.2 319 80.6
RcHm_v2.0_Chr4g0438461 Rosa chinensis HOM05D001391 ORTHO05D005432 2.1e-144 516.2 322 80.4
CARHR145860 Cardamine hirsuta HOM05D001391 ORTHO05D005432 2.7e-144 515.8 324 79.6
HanXRQChr12g0375271 Helianthus annuus HOM05D001391 ORTHO05D005432 1.0e-143 513.8 318 80.5
AUR62003104 Chenopodium quinoa HOM05D001391 ORTHO05D005432 2.0e-142 509.6 323 77.7
PGSC0003DMG400028375 Solanum tuberosum HOM05D001391 ORTHO05D005432 2.6e-142 509.2 306 82.4
ECA246G4329 Erigeron canadensis HOM05D001391 ORTHO05D005432 3.4e-142 508.8 319 78.4
CDE05G0079 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 9.8e-142 507.3 327 76.1
PSO017G5650 Papaver somniferum HOM05D001391 ORTHO05D005432 2.2e-141 506.1 315 79.0
PSO478G1327 Papaver somniferum HOM05D001391 ORTHO05D005432 1.1e-140 503.8 315 78.7
Aqoxy3G03632 Aquilegia oxysepala HOM05D001391 ORTHO05D005432 1.8e-140 503.1 321 78.5
EL10Ac6g14993 Beta vulgaris HOM05D001391 ORTHO05D005432 2.4e-140 502.7 321 78.2
Gorai.013G093700 Gossypium raimondii HOM05D001391 ORTHO05D005432 7.0e-140 501.1 327 76.8
ATR0064G010 Amborella trichopoda HOM05D001391 ORTHO05D005432 7.7e-139 497.7 304 78.9
Gohir.D13G081800 Gossypium hirsutum HOM05D001391 ORTHO05D005432 2.9e-138 495.7 327 76.1
Zm00001eb393170 Zea mays HOM05D001391 ORTHO05D005432 5.0e-138 495.0 320 77.2
DCAR_030039 Daucus carota HOM05D001391 ORTHO05D005432 1.1e-137 493.8 300 81.0
unitig_22.g6493 Utricularia gibba HOM05D001391 ORTHO05D005432 7.2e-137 491.1 334 74.6
Lsat_1_v5_gn_3_53800 Lactuca sativa HOM05D001391 ORTHO05D005432 2.1e-136 489.6 326 75.8
Nitab4.5_0001487g0070 Nicotiana tabacum HOM05D001391 ORTHO05D005432 6.1e-136 488.0 300 81.7
CsaV3_6G032550 Cucumis sativus L. HOM05D001391 ORTHO05D005432 3.0e-135 485.7 351 73.2
HPP92_020445 Vanilla planifolia HOM05D001391 ORTHO05D005432 5.2e-135 485.0 309 77.7
Nitab4.5_0000231g0390 Nicotiana tabacum HOM05D001391 ORTHO05D005432 3.4e-134 482.3 297 81.5
Sabra08G0071900 Salix brachista HOM05D001391 ORTHO05D005432 9.2e-132 474.2 318 78.3
Hund05837 Selenicereus undatus HOM05D001391 ORTHO05D005432 1.6e-131 473.4 313 74.4
SMO364G0146 Selaginella moellendorffii HOM05D001391 ORTHO05D005432 2.3e-130 469.5 300 75.7
Zm00001eb020150 Zea mays HOM05D001391 ORTHO05D005432 3.8e-130 468.8 300 76.7
Migut.L01194 Erythranthe guttata HOM05D001391 ORTHO05D005432 5.0e-130 468.4 314 74.8
TAR622G0883 Trochodendron aralioides HOM05D001391 ORTHO05D005432 5.0e-130 468.4 345 68.7
AagrBONN_evm.TU.Sc2ySwM_228.3454 Anthoceros agrestis HOM05D001391 ORTHO05D005432 9.5e-129 464.2 315 71.4
Pp3c1_8060 Physcomitrium patens HOM05D001391 ORTHO05D005432 4.0e-127 458.8 313 70.6
vmacro01316 Vaccinium macrocarpon HOM05D001391 ORTHO05D005432 1.2e-126 457.2 336 70.2
PSO478G2440 Papaver somniferum HOM05D001391 ORTHO05D005432 7.5e-126 454.5 302 75.5
Dinv16729 Davidia involucrata HOM05D001391 ORTHO05D005432 6.4e-125 451.4 299 76.3
Pp3c2_37740 Physcomitrium patens HOM05D001391 ORTHO05D005432 6.4e-125 451.4 312 71.2
CsaV3_6G033630 Cucumis sativus L. HOM05D001391 ORTHO05D005432 8.3e-125 451.1 363 68.0
Glyma.07G225600 Glycine max HOM05D001391 ORTHO05D005432 3.2e-124 449.1 268 84.7
Lj6C779T14 Lonicera japonica HOM05D001391 ORTHO05D005432 3.2e-124 449.1 403 63.5
Mapoly0041s0056 Marchantia polymorpha HOM05D001391 ORTHO05D005432 4.1e-124 448.7 312 71.8
Phvul.002G102100 Phaseolus vulgaris HOM05D001391 ORTHO05D005432 7.0e-124 448.0 269 83.6
ClCG08G010360 Citrullus lanatus HOM05D001391 ORTHO05D005432 2.7e-123 446.0 321 73.2
Cpa.g.sc1.121 Carica papaya HOM05D001391 ORTHO05D005432 2.3e-122 443.0 257 87.9
CBR_g22084 Chara braunii HOM05D001391 ORTHO05D005432 3.3e-121 439.1 316 68.7
Thhalv10022792m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 6.6e-114 414.8 321 66.0
Thhalv10022979m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 6.6e-114 414.8 321 66.0
Eucgr.B03155 Eucalyptus grandis HOM05D001391 ORTHO05D005432 9.5e-113 411.0 242 83.9
Nn4g23419 Nelumbo nucifera HOM05D001391 ORTHO05D005432 2.6e-110 402.9 321 66.4
AUR62007921 Chenopodium quinoa HOM05D001391 ORTHO05D005432 8.3e-109 397.9 319 64.3
Rhsim12G0074900 Rhododendron simsii HOM05D001391 ORTHO05D005432 1.1e-108 397.5 307 69.1
Peaxi162Scf00175g00121 Petunia axillaris HOM05D001391 ORTHO05D005432 1.4e-108 397.1 234 81.2
Sc11g0002420 Simmondsia chinensis HOM05D001391 ORTHO05D005432 2.4e-108 396.4 264 75.4
MBI16_g24179_MAGBIO Magnolia biondii HOM05D001391 ORTHO05D005432 1.0e-106 391.0 325 65.5
Solyc05g012340.4 Solanum lycopersicum HOM05D001391 ORTHO05D005432 2.3e-106 389.8 235 83.4
Thecc.02G331800 Theobroma cacao HOM05D001391 ORTHO05D005432 4.4e-94 349.0 192 86.5
Gohir.A13G082200 Gossypium hirsutum HOM05D001391 ORTHO05D005432 4.3e-89 332.4 194 81.4
CDE02G0606 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 1.2e-86 324.3 194 77.8
Nn3g17437 Nelumbo nucifera HOM05D001391 ORTHO05D005432 7.6e-86 321.6 320 55.3
CSS0036366 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 1.4e-84 317.4 233 71.2
Eucgr.B03159 Eucalyptus grandis HOM05D001391 ORTHO05D005432 3.4e-78 296.2 197 76.6
Gohir.D12G164650 Gossypium hirsutum HOM05D001391 ORTHO05D005432 1.1e-73 281.2 262 61.5
HanXRQChr08g0223901 Helianthus annuus HOM05D001391 ORTHO05D005432 4.9e-69 265.8 185 76.8
Hund25181 Selenicereus undatus HOM05D001391 ORTHO05D005432 2.2e-64 250.4 143 80.4
Gorai.008G177300 Gossypium raimondii HOM05D001391 ORTHO05D005432 1.7e-61 240.7 167 76.0
SEGI_41081 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.8e-40 170.2 129 65.1
SEGI_06703 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 3.1e-39 166.8 121 67.8
CSS0025210 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 2.0e-38 164.1 90 78.9
QL03p071882 Quercus lobata HOM05D001391 ORTHO05D005432 1.7e-37 161.0 117 78.6
QL01p050908 Quercus lobata HOM05D001391 ORTHO05D005432 2.2e-37 160.6 145 65.5
SEGI_37700 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 5.0e-37 159.5 120 65.0
Gorai.008G177400 Gossypium raimondii HOM05D001391 ORTHO05D005432 2.3e-34 150.6 82 84.1
Hma1.2p1_1826F.1_g304410 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 3.1e-31 140.2 124 62.9
Hund25180 Selenicereus undatus HOM05D001391 ORTHO05D005432 7.7e-30 135.6 97 71.1
Mapoly0004s0019 Marchantia polymorpha HOM05D001391 ORTHO05D005432 8.5e-29 132.1 257 32.7
Hma1.2p1_3404F.1_g335810 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 2.5e-28 130.6 118 65.3
Gohir.A13G082366 Gossypium hirsutum HOM05D001391 ORTHO05D005432 5.7e-25 119.4 88 71.6
SEGI_28419 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 4.1e-23 113.2 86 62.8
BcaB07g30295 Brassica carinata HOM05D001391 ORTHO05D005432 5.0e-21 106.3 79 77.2
QL01p050911 Quercus lobata HOM05D001391 ORTHO05D005432 1.2e-19 101.7 73 80.8
Os03g0421400 Oryza sativa ssp. japonica HOM05D001391 ORTHO05D005432 2.8e-19 100.5 72 65.3
SEGI_10839 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.3e-18 97.4 67 62.7
SEGI_38290 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.5e-17 94.7 53 73.6
MD16G1164500 Malus domestica HOM05D001391 ORTHO05D005432 4.1e-15 86.7 52 71.2


User provided reference genes

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