Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p021792 Quercus lobata HOM05D004638 ORTHO05D005443 3.4e-176 621.7 346 100.0
Cfa014805 Carpinus fangiana HOM05D004638 ORTHO05D005443 6.1e-133 478.0 349 79.4
CiPaw.01G176300 Carya illinoinensis HOM05D004638 ORTHO05D005443 3.1e-129 465.7 350 78.3
Haze_11486 Corylus avellana HOM05D004638 ORTHO05D005443 3.8e-127 458.8 349 78.2
Haze_15400 Corylus avellana HOM05D004638 ORTHO05D005443 3.2e-126 455.7 349 77.1
Haze_15402 Corylus avellana HOM05D004638 ORTHO05D005443 3.2e-126 455.7 349 77.1
Duzib052G1194 Durio zibethinus HOM05D004638 ORTHO05D005443 3.3e-115 419.1 350 70.3
CiPaw.02G105500 Carya illinoinensis HOM05D004638 ORTHO05D005443 1.4e-113 413.7 340 71.8
Thecc.04G268000 Theobroma cacao HOM05D004638 ORTHO05D005443 1.0e-108 397.5 350 68.6
Duzib212G0972 Durio zibethinus HOM05D004638 ORTHO05D005443 6.7e-108 394.8 352 69.0
TWI53G1292 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 6.7e-108 394.8 348 66.7
ClCG06G018050 Citrullus lanatus HOM05D004638 ORTHO05D005443 4.4e-107 392.1 350 67.1
Atru.chr4.1922 Acer truncatum HOM05D004638 ORTHO05D005443 3.7e-106 389.0 353 66.6
CsaV3_1G000420 Cucumis sativus L. HOM05D004638 ORTHO05D005443 1.8e-105 386.7 350 66.9
MELO3C026193.2 Cucumis melo HOM05D004638 ORTHO05D005443 9.1e-105 384.4 350 66.3
Manes.15G046900 Manihot esculenta HOM05D004638 ORTHO05D005443 2.7e-104 382.9 349 65.3
MD16G1229100 Malus domestica HOM05D004638 ORTHO05D005443 7.7e-104 381.3 358 65.4
Gohir.A09G230500 Gossypium hirsutum HOM05D004638 ORTHO05D005443 2.9e-103 379.4 351 64.7
Gohir.D09G231600 Gossypium hirsutum HOM05D004638 ORTHO05D005443 6.5e-103 378.3 351 64.1
Gorai.006G254300 Gossypium raimondii HOM05D004638 ORTHO05D005443 6.5e-103 378.3 351 64.1
Prupe.1G051000 Prunus persica HOM05D004638 ORTHO05D005443 6.5e-103 378.3 350 65.1
Ciclev10025979m.g Citrus clementina HOM05D004638 ORTHO05D005443 3.0e-100 369.4 346 64.5
COL.COLO4_15993 Corchorus olitorius HOM05D004638 ORTHO05D005443 2.6e-99 366.3 351 63.5
RcHm_v2.0_Chr4g0395981 Rosa chinensis HOM05D004638 ORTHO05D005443 2.6e-99 366.3 352 64.8
PGR142G1578 Punica granatum HOM05D004638 ORTHO05D005443 3.4e-99 365.9 347 65.1
FvH4_2g18960 Fragaria vesca HOM05D004638 ORTHO05D005443 2.2e-98 363.2 352 63.4
FAN24G1523 Fragaria x ananassa HOM05D004638 ORTHO05D005443 8.3e-98 361.3 352 63.4
FAN17G1367 Fragaria x ananassa HOM05D004638 ORTHO05D005443 3.1e-97 359.4 352 62.8
Cpa.g.c29962.1 Carica papaya HOM05D004638 ORTHO05D005443 5.4e-97 358.6 347 63.7
Sed0011634 Sechium edule HOM05D004638 ORTHO05D005443 3.8e-95 352.4 346 61.8
THA.LOC104800549 Tarenaya hassleriana HOM05D004638 ORTHO05D005443 3.8e-95 352.4 355 62.8
FvH4_4g05060 Fragaria vesca HOM05D004638 ORTHO05D005443 6.6e-95 351.7 352 61.6
FAN12G0885 Fragaria x ananassa HOM05D004638 ORTHO05D005443 6.6e-95 351.7 352 61.6
Aa31LG11G6060 Aethionema arabicum HOM05D004638 ORTHO05D005443 1.9e-94 350.1 352 61.6
Potri.010G064100 Populus trichocarpa HOM05D004638 ORTHO05D005443 2.5e-94 349.7 349 62.8
Atru.chr2.74 Acer truncatum HOM05D004638 ORTHO05D005443 1.6e-93 347.1 323 65.0
FAN22G0870 Fragaria x ananassa HOM05D004638 ORTHO05D005443 1.6e-93 347.1 352 61.6
TAR623G0129 Trochodendron aralioides HOM05D004638 ORTHO05D005443 3.6e-93 345.9 334 65.3
FAN15G0747 Fragaria x ananassa HOM05D004638 ORTHO05D005443 4.7e-93 345.5 349 61.6
Glyma.19G074500 Glycine max HOM05D004638 ORTHO05D005443 4.7e-93 345.5 359 59.1
ClCG06G007330 Citrullus lanatus HOM05D004638 ORTHO05D005443 1.4e-92 344.0 338 61.8
VMungo1215G0894 Vigna mungo HOM05D004638 ORTHO05D005443 2.3e-92 343.2 353 59.2
MELO3C023050.2 Cucumis melo HOM05D004638 ORTHO05D005443 1.5e-91 340.5 349 60.2
Thhalv10013953m.g Eutrema salsugineum HOM05D004638 ORTHO05D005443 3.4e-91 339.3 345 61.4
TWI73G0168 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 9.8e-91 337.8 349 59.9
CsaV3_2G012340 Cucumis sativus L. HOM05D004638 ORTHO05D005443 2.8e-90 336.3 350 59.1
GSVIVG01027946001 Vitis vinifera HOM05D004638 ORTHO05D005443 3.7e-90 335.9 341 59.2
Phvul.003G100800 Phaseolus vulgaris HOM05D004638 ORTHO05D005443 3.1e-89 332.8 352 57.7
Sp6g37620 Schrenkiella parvula HOM05D004638 ORTHO05D005443 1.6e-88 330.5 351 60.1
Eucgr.H01383 Eucalyptus grandis HOM05D004638 ORTHO05D005443 2.0e-88 330.1 352 59.7
Potri.008G173300 Populus trichocarpa HOM05D004638 ORTHO05D005443 9.5e-86 321.2 347 58.8
CANSAT01G0932 Cannabis sativa HOM05D004638 ORTHO05D005443 1.4e-84 317.4 352 58.2
CANSAT01G3035 Cannabis sativa HOM05D004638 ORTHO05D005443 1.4e-84 317.4 352 58.2
BcaB01g05944 Brassica carinata HOM05D004638 ORTHO05D005443 1.8e-84 317.0 350 57.7
BcaC03g13151 Brassica carinata HOM05D004638 ORTHO05D005443 1.8e-84 317.0 351 57.5
BolC2t06190H Brassica oleracea HOM05D004638 ORTHO05D005443 1.8e-84 317.0 351 57.5
C03p02590 Brassica napus HOM05D004638 ORTHO05D005443 2.3e-84 316.6 354 57.6
C02p02210 Brassica napus HOM05D004638 ORTHO05D005443 3.0e-84 316.2 347 57.9
BolC3t12811H Brassica oleracea HOM05D004638 ORTHO05D005443 6.8e-84 315.1 351 56.7
BraA02t04837Z Brassica rapa HOM05D004638 ORTHO05D005443 6.8e-84 315.1 346 58.1
AL6G15050 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 2.0e-83 313.5 371 55.8
BcaB05g21727 Brassica carinata HOM05D004638 ORTHO05D005443 2.6e-83 313.2 348 57.2
Sabra10G0042900 Salix brachista HOM05D004638 ORTHO05D005443 1.3e-82 310.8 352 56.0
Carub.0006s0414 Capsella rubella HOM05D004638 ORTHO05D005443 2.2e-82 310.1 362 54.7
Medtr5g012820 Medicago truncatula HOM05D004638 ORTHO05D005443 2.2e-82 310.1 352 55.1
Glyma.05G075900 Glycine max HOM05D004638 ORTHO05D005443 3.7e-82 309.3 335 56.7
BcaB01g05717 Brassica carinata HOM05D004638 ORTHO05D005443 2.4e-81 306.6 346 56.6
A03p02250 Brassica napus HOM05D004638 ORTHO05D005443 3.2e-81 306.2 351 55.8
BraA03t09589Z Brassica rapa HOM05D004638 ORTHO05D005443 3.2e-81 306.2 351 55.8
CARHR208030 Cardamine hirsuta HOM05D004638 ORTHO05D005443 9.2e-81 304.7 348 54.3
Lalb_Chr11g0063191 Lupinus albus HOM05D004638 ORTHO05D005443 1.2e-80 304.3 347 56.2
Psat2g177000 Pisum sativum HOM05D004638 ORTHO05D005443 1.2e-80 304.3 355 53.2
Lj2C17T3 Lonicera japonica HOM05D004638 ORTHO05D005443 1.0e-79 301.2 341 56.6
AT5G05210 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 3.9e-79 299.3 389 51.7
Dinv31214 Davidia involucrata HOM05D001005 ORTHO05D000836 4.3e-78 295.8 344 55.5
Hma1.2p1_0751F.1_g212710 Hydrangea macrophylla HOM05D004638 ORTHO05D005443 5.6e-78 295.4 355 52.7
TPR.G7963 Trifolium pratense HOM05D004638 ORTHO05D005443 5.2e-76 288.9 336 54.5
DCAR_007662 Daucus carota HOM05D004638 ORTHO05D005443 6.8e-76 288.5 348 52.3
Ca_03509_v3 Cicer arietinum L. HOM05D004638 ORTHO05D005443 2.9e-74 283.1 357 52.9
ATR0051G063 Amborella trichopoda HOM05D004638 ORTHO05D005443 4.9e-74 282.3 343 53.9
Lalb_Chr08g0244981 Lupinus albus HOM05D004638 ORTHO05D005443 3.2e-73 279.6 349 53.3
arahy.Tifrunner.gnm1.ann1.L9DXTM Arachis hypogaea HOM05D004638 ORTHO05D005443 6.0e-72 275.4 347 51.3
Ah.16g102130 Amaranthus hybridus HOM05D004638 ORTHO05D005443 7.8e-72 275.0 368 50.5
COL.COLO4_32263 Corchorus olitorius HOM05D004638 ORTHO05D005443 6.6e-71 271.9 351 53.8
TPR.G18128 Trifolium pratense HOM05D004638 ORTHO05D005443 1.1e-70 271.2 384 47.9
CDE06G2325 Ceratophyllum demersum HOM05D004638 ORTHO05D005443 3.3e-70 269.6 322 54.0
HPP92_027401 Vanilla planifolia HOM05D004638 ORTHO05D005443 4.3e-70 269.2 364 49.2
MD13G1224300 Malus domestica HOM05D004638 ORTHO05D005443 2.3e-68 263.5 271 60.9
Lj4g0009002 Lotus japonicus HOM05D004638 ORTHO05D005443 1.2e-67 261.2 348 51.1
EL10Ac2g04652 Beta vulgaris HOM05D004638 ORTHO05D005443 3.4e-67 259.6 339 50.1
Aqoxy5G00949 Aquilegia oxysepala HOM05D004638 ORTHO05D005443 5.8e-67 258.8 377 50.1
Sc06g0001700 Simmondsia chinensis HOM05D004638 ORTHO05D005443 9.9e-67 258.1 355 47.6
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 8.3e-66 255.0 366 48.6
CDE07G1349 Ceratophyllum demersum HOM05D002308 ORTHO05D005297 3.0e-63 246.5 298 53.4
Peaxi162Scf00048g00171 Petunia axillaris HOM05D004638 ORTHO05D005443 7.6e-59 231.9 348 47.1
Oeu017919.1 Olea europaea HOM05D004638 ORTHO05D005443 1.4e-57 227.6 369 45.5
SGA_v2.0_scaffold21G09643 Striga asiatica HOM05D004638 ORTHO05D005443 1.4e-57 227.6 345 46.7
HanXRQChr11g0320631 Helianthus annuus HOM05D004638 ORTHO05D005443 1.9e-57 227.3 365 46.0
Lsat_1_v5_gn_9_30280 Lactuca sativa HOM05D004638 ORTHO05D005443 1.2e-56 224.6 341 45.7
PGSC0003DMG400013656 Solanum tuberosum HOM05D004638 ORTHO05D005443 7.8e-56 221.9 342 45.6
HanXRQChr14g0438771 Helianthus annuus HOM05D004638 ORTHO05D005443 1.7e-55 220.7 368 46.2
SalBow5G3921 Salvia bowleyana HOM05D004638 ORTHO05D005443 2.3e-55 220.3 344 46.8
ECA246G4403 Erigeron canadensis HOM05D004638 ORTHO05D005443 7.3e-54 215.3 359 43.7
Nitab4.5_0001815g0110 Nicotiana tabacum HOM05D004638 ORTHO05D005443 2.1e-53 213.8 350 44.3
Sopen02g026790 Solanum pennellii HOM05D004638 ORTHO05D005443 2.8e-53 213.4 367 43.6
Solyc02g082130.2 Solanum lycopersicum HOM05D004638 ORTHO05D005443 8.1e-53 211.8 368 44.0
SGA_v2.0_scaffold41G15829 Striga asiatica HOM05D004638 ORTHO05D005443 1.8e-52 210.7 338 46.2
Migut.L01893 Erythranthe guttata HOM05D004638 ORTHO05D005443 5.3e-52 209.1 328 46.3
Nitab4.5_0000614g0010 Nicotiana tabacum HOM05D004638 ORTHO05D005443 1.2e-51 208.0 350 44.3
Mapoly0122s0042 Marchantia polymorpha HOM05D004638 ORTHO05D005443 2.0e-51 207.2 349 43.6
Carub.0004s0850 Capsella rubella HOM05D004638 ORTHO05D005443 5.8e-51 205.7 336 45.8
MSTRG.13923 Avicennia marina HOM05D004638 ORTHO05D005443 9.3e-49 198.4 337 45.4
MSTRG.26536 Avicennia marina HOM05D004638 ORTHO05D005443 9.3e-49 198.4 337 45.4
CSS0022021 Camellia sinensis var. sinensis HOM05D004638 ORTHO05D005443 3.5e-48 196.4 292 49.3
Zm00001eb248040 Zea mays HOM05D004638 ORTHO05D005443 2.3e-47 193.7 359 42.3
AL4G22550 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 2.5e-46 190.3 312 45.2
SEGI_31736 Sequoiadendron giganteum HOM05D004638 ORTHO05D005443 5.6e-46 189.1 357 42.6
Medtr2g079000 Medicago truncatula HOM05D004638 ORTHO05D005443 1.1e-44 184.9 305 43.3
Nn4g24624 Nelumbo nucifera HOM05D004638 ORTHO05D005443 6.9e-44 182.2 209 57.9
CAN.G809.17 Capsicum annuum HOM05D004638 ORTHO05D005443 1.5e-43 181.0 363 39.7
Atru.chr4.1888 Acer truncatum HOM05D004638 ORTHO05D005443 3.8e-42 176.4 318 39.6
Pp3c8_4010 Physcomitrium patens HOM05D004638 ORTHO05D005443 1.2e-40 171.4 347 39.5
Actinidia06751 Actinidia chinensis HOM05D004638 ORTHO05D005443 5.1e-39 166.0 275 45.5
arahy.Tifrunner.gnm1.ann1.XHZZ6B Arachis hypogaea HOM05D004638 ORTHO05D005443 1.5e-38 164.5 311 42.4
AUR62014564 Chenopodium quinoa HOM05D004638 ORTHO05D005443 1.5e-38 164.5 333 37.2
Cc04_g09510 Coffea canephora HOM05D004638 ORTHO05D005443 1.4e-36 157.9 373 38.1
Actinidia22435 Actinidia chinensis HOM05D004638 ORTHO05D005443 3.1e-36 156.8 130 70.0
AagrBONN_evm.TU.Sc2ySwM_368.887 Anthoceros agrestis HOM05D004638 ORTHO05D005443 9.0e-36 155.2 316 39.2
SMO119G0466 Selaginella moellendorffii HOM05D004638 ORTHO05D005443 3.4e-35 153.3 338 35.8
Os05g0372200 Oryza sativa ssp. japonica HOM05D004638 ORTHO05D005443 1.9e-33 147.5 357 36.7
Lj3g0004611 Lotus japonicus HOM05D004638 ORTHO05D005443 2.3e-31 140.6 318 37.4
Manes.12G121700 Manihot esculenta HOM05D004638 ORTHO05D005443 8.7e-31 138.7 222 49.5
AT2G27750 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 1.4e-28 131.3 185 47.6
HanXRQChr11g0320651 Helianthus annuus HOM05D004638 ORTHO05D005443 3.8e-26 123.2 192 46.9
AUR62039396 Chenopodium quinoa HOM05D004638 ORTHO05D005443 5.1e-23 112.8 107 58.9
arahy.Tifrunner.gnm1.ann1.EFW0VL Arachis hypogaea HOM05D004638 ORTHO05D005443 1.1e-20 105.1 169 45.0
Oeu016931.1 Olea europaea HOM05D004638 ORTHO05D005443 1.3e-18 98.2 264 37.5
CBR_g30748 Chara braunii HOM05D003542 ORTHO05D004799 5.0e-18 96.3 434 30.2
unitig_22.g5967 Utricularia gibba HOM05D004638 ORTHO05D005443 1.2e-16 91.7 102 51.0
Lj3g0021975 Lotus japonicus HOM05D004638 ORTHO05D005443 7.9e-16 89.0 164 44.5
MCO04G484 Micromonas commoda HOM05D004638 ORTHO05D005443 1.1e-14 85.1 339 31.6
Actinidia16422 Actinidia chinensis HOM05D004638 ORTHO05D005443 4.3e-14 83.2 104 57.7
AUR62039395 Chenopodium quinoa HOM05D004638 ORTHO05D005443 4.3e-14 83.2 90 52.2
unitig_22.g5966 Utricularia gibba HOM05D004638 ORTHO05D005443 8.2e-13 79.0 180 38.9
RcHm_v2.0_Chr3g0493171 Rosa chinensis HOM05D004638 ORTHO05D005443 5.0e-10 69.7 61 60.7
RcHm_v2.0_Chr5g0061161 Rosa chinensis HOM05D004638 ORTHO05D005443 1.9e-09 67.8 61 59.0
Sabra08G0132300 Salix brachista HOM05D004638 ORTHO05D005443 3.9e-07 60.1 183 32.2
Medtr2g079040 Medicago truncatula HOM05D004638 ORTHO05D005443 8.8e-07 58.9 50 64.0
Nitab4.5_0000047g0220 Nicotiana tabacum HOM05D004638 ORTHO05D005443 2.6e-06 57.4 90 37.8
SEGI_33577 Sequoiadendron giganteum HOM05D004638 ORTHO05D005443 3.3e-06 57.0 38 65.8


User provided reference genes

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