Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p021124 Quercus lobata HOM05D006910 ORTHO05D008937 3.3e-170 602.1 416 100.0
Haze_11463 Corylus avellana HOM05D006910 ORTHO05D008937 1.4e-88 330.9 440 68.6
CiPaw.01G177500 Carya illinoinensis HOM05D006910 ORTHO05D008937 1.1e-69 268.1 263 67.3
Manes.03G158500 Manihot esculenta HOM05D006910 ORTHO05D008937 1.5e-66 257.7 329 54.4
Atru.chr4.1910 Acer truncatum HOM05D006910 ORTHO05D008937 7.7e-66 255.4 326 55.8
Prupe.1G049000 Prunus persica HOM05D006910 ORTHO05D008937 2.2e-65 253.8 327 56.3
Hma1.2p1_0112F.1_g054780 Hydrangea macrophylla HOM05D006910 ORTHO05D008937 1.8e-62 244.2 327 53.8
Ciclev10004771m.g Citrus clementina HOM05D006910 ORTHO05D008937 2.6e-61 240.4 333 52.3
Cpa.g.sc59.4 Carica papaya HOM05D006910 ORTHO05D008937 7.0e-59 232.3 328 54.3
Glyma.20G199800 Glycine max HOM05D006910 ORTHO05D008937 5.9e-58 229.2 328 52.7
Potri.010G065400 Populus trichocarpa HOM05D006910 ORTHO05D008937 2.2e-57 227.3 329 47.7
Sabra08G0131500 Salix brachista HOM05D006910 ORTHO05D008937 9.4e-56 221.9 319 48.6
VMungo0720G1174 Vigna mungo HOM05D006910 ORTHO05D008937 4.7e-55 219.5 325 50.5
GSVIVG01027919001 Vitis vinifera HOM05D006910 ORTHO05D008937 8.0e-55 218.8 330 53.0
Phvul.011G133545 Phaseolus vulgaris HOM05D006910 ORTHO05D008937 1.4e-54 218.0 328 50.3
Nitab4.5_0006344g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 1.5e-53 214.5 340 49.7
Glyma.10G190700 Glycine max HOM05D006910 ORTHO05D008937 5.7e-53 212.6 325 51.1
CSS0027831 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 7.5e-53 212.2 332 51.8
Rhsim02G0044100 Rhododendron simsii HOM05D006910 ORTHO05D008937 7.5e-53 212.2 317 53.0
Nitab4.5_0000355g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 1.3e-52 211.5 344 46.8
Thecc.04G265400 Theobroma cacao HOM05D006910 ORTHO05D008937 3.7e-52 209.9 329 50.8
Dinv27116 Davidia involucrata HOM05D006910 ORTHO05D008937 4.8e-52 209.5 334 49.7
MD16G1226800 Malus domestica HOM05D006910 ORTHO05D008937 6.3e-52 209.1 327 50.8
Sabra10G0041700 Salix brachista HOM05D006910 ORTHO05D008937 6.3e-52 209.1 309 47.6
RcHm_v2.0_Chr4g0395481 Rosa chinensis HOM05D006910 ORTHO05D008937 1.1e-51 208.4 328 52.1
vmacro15481 Vaccinium macrocarpon HOM05D006910 ORTHO05D008937 1.1e-51 208.4 331 51.4
Lj5g0027299 Lotus japonicus HOM05D006910 ORTHO05D008937 2.7e-50 203.8 331 51.1
CSS0021483 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 5.0e-49 199.5 341 42.2
Peaxi162Scf00319g00521 Petunia axillaris HOM05D006910 ORTHO05D008937 5.0e-49 199.5 343 47.8
MD13G1221900 Malus domestica HOM05D006910 ORTHO05D008937 2.5e-48 197.2 325 49.5
COL.COLO4_15971 Corchorus olitorius HOM05D006910 ORTHO05D008937 7.2e-48 195.7 329 47.4
CANSAT78G1020 Cannabis sativa HOM05D006910 ORTHO05D008937 9.4e-48 195.3 325 48.9
FAN17G1396 Fragaria x ananassa HOM05D006910 ORTHO05D008937 1.2e-47 194.9 327 49.2
Dinv29800 Davidia involucrata HOM05D006910 ORTHO05D008937 2.1e-47 194.1 269 53.9
Actinidia39932 Actinidia chinensis HOM05D006910 ORTHO05D008937 3.6e-47 193.4 327 49.5
Potri.008G172200 Populus trichocarpa HOM05D006910 ORTHO05D008937 3.6e-47 193.4 322 46.3
Cc03_g06380 Coffea canephora HOM05D006910 ORTHO05D008937 4.7e-47 193.0 339 46.3
Gorai.011G179800 Gossypium raimondii HOM05D006910 ORTHO05D008937 4.7e-47 193.0 329 50.2
FvH4_4g04670 Fragaria vesca HOM05D006910 ORTHO05D008937 6.1e-47 192.6 327 49.2
Solyc09g090930.3 Solanum lycopersicum HOM05D006910 ORTHO05D008937 4.0e-46 189.9 338 47.6
FAN12G3461 Fragaria x ananassa HOM05D006910 ORTHO05D008937 6.8e-46 189.1 337 40.7
Psat6g131280 Pisum sativum HOM05D006910 ORTHO05D008937 8.8e-46 188.7 328 47.0
Gohir.A10G107300 Gossypium hirsutum HOM05D006910 ORTHO05D008937 7.5e-45 185.7 329 49.2
PGR031G1888 Punica granatum HOM05D006910 ORTHO05D008937 9.8e-45 185.3 326 47.5
DCAR_027350 Daucus carota HOM05D006910 ORTHO05D008937 1.3e-44 184.9 333 44.7
FAN22G1859 Fragaria x ananassa HOM05D006910 ORTHO05D008937 1.3e-44 184.9 319 48.6
PGSC0003DMG400001551 Solanum tuberosum HOM05D006910 ORTHO05D008937 1.3e-44 184.9 338 48.2
PGR031G1691 Punica granatum HOM05D006910 ORTHO05D008937 1.4e-43 181.4 323 47.4
Sopen09g033910 Solanum pennellii HOM05D006910 ORTHO05D008937 1.4e-43 181.4 338 46.7
Duzib151G0386 Durio zibethinus HOM05D006910 ORTHO05D008937 2.4e-43 180.6 232 59.1
CAN.G638.37 Capsicum annuum HOM05D006910 ORTHO05D008937 7.0e-43 179.1 344 43.9
Lj6C621T3 Lonicera japonica HOM05D006910 ORTHO05D008937 7.0e-43 179.1 333 47.7
PGSC0003DMG400013458 Solanum tuberosum HOM05D006910 ORTHO05D008937 4.5e-42 176.4 341 46.6
CAN.G524.13 Capsicum annuum HOM05D006910 ORTHO05D008937 5.9e-42 176.0 341 45.5
Gohir.D10G160000 Gossypium hirsutum HOM05D006910 ORTHO05D008937 1.0e-41 175.3 326 48.8
Sopen03g001720 Solanum pennellii HOM05D006910 ORTHO05D008937 3.8e-41 173.3 335 46.9
TWI53G1612 Tripterygium wilfordii HOM05D006910 ORTHO05D008937 4.2e-40 169.9 326 45.1
MSTRG.4175 Avicennia marina HOM05D006910 ORTHO05D008937 7.2e-40 169.1 347 42.9
Medtr1g073230 Medicago truncatula HOM05D006910 ORTHO05D008937 1.6e-39 167.9 326 44.8
Hund20492 Selenicereus undatus HOM05D006910 ORTHO05D008937 2.1e-39 167.5 330 44.5
arahy.Tifrunner.gnm1.ann1.YFRU1Z Arachis hypogaea HOM05D006910 ORTHO05D008937 3.6e-39 166.8 331 44.7
Eucgr.H00126 Eucalyptus grandis HOM05D006910 ORTHO05D008937 8.0e-39 165.6 233 53.6
arahy.Tifrunner.gnm1.ann1.DX8ZNF Arachis hypogaea HOM05D006910 ORTHO05D008937 2.3e-38 164.1 331 43.8
Migut.G00574 Erythranthe guttata HOM05D006910 ORTHO05D008937 5.2e-38 162.9 338 44.7
Peaxi162Scf01044g00225 Petunia axillaris HOM05D006910 ORTHO05D008937 1.2e-37 161.8 335 44.5
EL10Ac3g06675 Beta vulgaris HOM05D006910 ORTHO05D008937 7.0e-35 152.5 327 43.7
Nitab4.5_0000592g0430 Nicotiana tabacum HOM05D006910 ORTHO05D008937 5.9e-34 149.4 346 36.1
AUR62015241 Chenopodium quinoa HOM05D006910 ORTHO05D008937 1.7e-33 147.9 329 42.6
SGA_v2.0_scaffold67G22680 Striga asiatica HOM05D006910 ORTHO05D008937 8.6e-33 145.6 334 42.8
Oeu011215.1 Olea europaea HOM05D006910 ORTHO05D008937 5.6e-32 142.9 318 43.1
Sc13g0003110 Simmondsia chinensis HOM05D006910 ORTHO05D008937 6.1e-31 139.4 301 42.5
Ca_09799_v3 Cicer arietinum L. HOM05D006910 ORTHO05D008937 2.3e-30 137.5 333 39.0
Ah.13g074730 Amaranthus hybridus HOM05D006910 ORTHO05D008937 1.2e-29 135.2 319 40.8
CSS0004989 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 2.6e-29 134.0 344 34.0
Sp1g03360 Schrenkiella parvula HOM05D006910 ORTHO05D008937 4.9e-28 129.8 325 32.6
TPR.G18548 Trifolium pratense HOM05D006910 ORTHO05D008937 1.8e-27 127.9 333 38.4
Aa31LG1G20340 Aethionema arabicum HOM05D006910 ORTHO05D008937 1.6e-26 124.8 204 38.2
Nitab4.5_0002210g0060 Nicotiana tabacum HOM05D006910 ORTHO05D008937 1.6e-26 124.8 326 33.1
ClCG05G003960 Citrullus lanatus HOM05D006910 ORTHO05D008937 7.8e-26 122.5 332 34.3
Carub.0001s0374 Capsella rubella HOM05D006910 ORTHO05D008937 1.0e-25 122.1 320 31.6
Lsat_1_v5_gn_6_66101 Lactuca sativa HOM05D006910 ORTHO05D008937 1.3e-25 121.7 189 44.4
Thhalv10008199m.g Eutrema salsugineum HOM05D006910 ORTHO05D008937 2.3e-25 120.9 219 37.0
AT1G04530 Arabidopsis thaliana HOM05D006910 ORTHO05D008937 5.0e-25 119.8 201 39.3
A10p02950 Brassica napus HOM05D006910 ORTHO05D008937 5.0e-25 119.8 325 30.5
BraA10t42564Z Brassica rapa HOM05D006910 ORTHO05D008937 5.0e-25 119.8 328 31.1
SalBow2G0872 Salvia bowleyana HOM05D006910 ORTHO05D008937 8.6e-25 119.0 336 31.2
CARHR003870 Cardamine hirsuta HOM05D006910 ORTHO05D008937 1.5e-24 118.2 338 33.4
MELO3C006372.2 Cucumis melo HOM05D006910 ORTHO05D008937 2.5e-24 117.5 333 38.4
CsaV3_3G011640 Cucumis sativus L. HOM05D006910 ORTHO05D008937 7.3e-24 115.9 330 33.3
BolC5t29051H Brassica oleracea HOM05D006910 ORTHO05D008937 1.6e-23 114.8 324 30.9
Lsat_1_v5_gn_1_75580 Lactuca sativa HOM05D006910 ORTHO05D008937 3.6e-23 113.6 325 37.8
Lalb_Chr06g0169541 Lupinus albus HOM05D006910 ORTHO05D008937 3.6e-23 113.6 202 38.6
PSO782G3886 Papaver somniferum HOM05D006910 ORTHO05D009593 6.2e-23 112.8 331 41.4
PSO541G4538 Papaver somniferum HOM05D007706 ORTHO05D009593 1.4e-22 111.7 167 41.9
Sed0015418 Sechium edule HOM05D006910 ORTHO05D008937 4.0e-22 110.2 326 39.0
Aqoxy5G00146 Aquilegia oxysepala HOM05D007706 ORTHO05D009593 6.8e-22 109.4 174 44.3
THA.LOC104801064 Tarenaya hassleriana HOM05D006910 ORTHO05D008937 1.2e-21 108.6 387 28.7
C05p02700 Brassica napus HOM05D006910 ORTHO05D008937 4.4e-21 106.7 324 29.3
Nn3g19784 Nelumbo nucifera HOM05D007706 ORTHO05D009593 5.8e-21 106.3 167 43.7
AL1G14180 Arabidopsis lyrata HOM05D006910 ORTHO05D008937 9.8e-21 105.5 327 30.3
Phvul.001G164700 Phaseolus vulgaris HOM05D007706 ORTHO05D009593 2.9e-20 104.0 202 40.1
THA.LOC104826095 Tarenaya hassleriana HOM05D006910 ORTHO05D008937 4.9e-20 103.2 262 32.8
Hma1.2p1_0366F.1_g136940 Hydrangea macrophylla HOM05D006910 ORTHO05D008937 1.4e-19 101.7 179 38.0
TAR362G1069 Trochodendron aralioides HOM05D007706 ORTHO05D009593 1.4e-19 101.7 169 43.8
PSO478G1200 Papaver somniferum HOM05D006910 ORTHO05D009593 1.2e-18 98.6 334 39.2
ECA248G3309 Erigeron canadensis HOM05D006910 ORTHO05D008937 1.6e-18 98.2 71 62.0
HanXRQChr01g0023021 Helianthus annuus HOM05D006910 ORTHO05D008937 3.5e-18 97.1 72 62.5
unitig_748.g8295 Utricularia gibba HOM05D006910 ORTHO05D008937 3.5e-18 97.1 325 35.4
C08p52150 Brassica napus HOM05D006910 ORTHO05D008937 1.9e-16 91.3 172 34.9
AUR62025443 Chenopodium quinoa HOM05D006910 ORTHO05D008937 3.3e-16 90.5 118 43.2
MBI07_g23229_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 1.2e-15 88.6 164 38.4
AUR62018038 Chenopodium quinoa HOM05D006910 ORTHO05D008937 1.6e-15 88.2 219 44.3
BolC8t52749H Brassica oleracea HOM05D006910 ORTHO05D008937 3.6e-15 87.0 172 34.3
Actinidia37550 Actinidia chinensis HOM05D006910 ORTHO05D008937 4.7e-15 86.7 144 42.4
EL10Ac7g17683 Beta vulgaris HOM05D007706 ORTHO05D009593 4.7e-15 86.7 207 34.8
PSO675G7213 Papaver somniferum HOM05D007706 ORTHO05D009593 8.1e-15 85.9 163 36.2
MBI02_g19811_MAGBIO Magnolia biondii HOM05D006910 ORTHO05D025782 3.7e-12 77.0 110 37.3
CDE05G1228 Ceratophyllum demersum HOM05D007706 ORTHO05D009593 4.9e-12 76.6 174 36.2
Duzib138G1124 Durio zibethinus HOM05D007706 ORTHO05D009593 1.2e-10 72.0 176 35.8
Hma1.2p1_1930F.1_g307940 Hydrangea macrophylla HOM05D007706 ORTHO05D009593 1.2e-10 72.0 178 38.8
PSO675G2181 Papaver somniferum HOM05D007706 ORTHO05D009593 1.6e-10 71.6 102 43.1
ECA236G0985 Erigeron canadensis HOM05D007706 ORTHO05D009593 6.0e-10 69.7 173 33.5
AUR62008796 Chenopodium quinoa HOM05D007706 ORTHO05D009593 2.3e-09 67.8 107 38.3
ATR0787G077 Amborella trichopoda HOM05D007706 ORTHO05D009593 3.9e-09 67.0 187 33.7
SMO118G0200 Selaginella moellendorffii HOM05D006910 ORTHO05D008937 1.5e-08 65.1 69 43.5
Dinv34676 Davidia involucrata HOM05D007706 ORTHO05D009593 2.5e-08 64.3 183 32.2
Lalb_Chr20g0113631 Lupinus albus HOM05D007706 ORTHO05D009593 2.5e-08 64.3 106 38.7
Ciclev10020687m.g Citrus clementina HOM05D007706 ORTHO05D009593 3.3e-08 63.9 87 42.5
Os04g0496700 Oryza sativa ssp. japonica HOM05D001903 ORTHO05D001847 3.3e-08 63.9 68 45.6
Ca_08742_v3 Cicer arietinum L. HOM05D007706 ORTHO05D009593 4.3e-08 63.5 137 39.4
Gohir.D06G119399 Gossypium hirsutum HOM05D001903 ORTHO05D001847 5.6e-08 63.2 86 38.4
FAN15G0362 Fragaria x ananassa HOM05D007706 ORTHO05D009593 7.3e-08 62.8 115 37.4
Gorai.010G137200 Gossypium raimondii HOM05D001903 ORTHO05D001847 7.3e-08 62.8 75 42.7
Rhsim13G0040100 Rhododendron simsii HOM05D007706 ORTHO05D009593 7.3e-08 62.8 176 31.2
TPR.G20053 Trifolium pratense HOM05D007706 ORTHO05D009593 9.5e-08 62.4 94 36.2
Migut.D00475 Erythranthe guttata HOM05D007706 ORTHO05D009593 1.2e-07 62.0 52 55.8
FvH4_2g20530 Fragaria vesca HOM05D007706 ORTHO05D009593 1.2e-07 62.0 115 37.4
FAN24G1454 Fragaria x ananassa HOM05D007706 ORTHO05D009593 1.2e-07 62.0 115 37.4
GSVIVG01028428001 Vitis vinifera HOM05D006910 ORTHO05D008937 1.2e-07 62.0 47 68.1
COL.COLO4_10568 Corchorus olitorius HOM05D007706 ORTHO05D009593 2.1e-07 61.2 57 54.4
Aa31LG2G18260 Aethionema arabicum HOM05D001903 ORTHO05D001847 4.7e-07 60.1 88 37.5
Medtr7g098450 Medicago truncatula HOM05D007706 ORTHO05D009593 4.7e-07 60.1 133 39.1
Nn1g02965 Nelumbo nucifera HOM05D007706 ORTHO05D009593 4.7e-07 60.1 37 73.0
Oeu026810.1 Olea europaea HOM05D007706 ORTHO05D009593 4.7e-07 60.1 44 63.6
Hund26517 Selenicereus undatus HOM05D001903 ORTHO05D001847 4.7e-07 60.1 70 38.6
Rhsim03G0248500 Rhododendron simsii HOM05D001903 ORTHO05D001847 6.2e-07 59.7 80 41.2
TWI12G0795 Tripterygium wilfordii HOM05D007706 ORTHO05D009593 6.2e-07 59.7 33 75.8
FAN27G2030 Fragaria x ananassa HOM05D007706 ORTHO05D009593 8.1e-07 59.3 115 36.5
Lj1g0013336 Lotus japonicus HOM05D007706 ORTHO05D009593 8.1e-07 59.3 172 33.7
RcHm_v2.0_Chr6g0286691 Rosa chinensis HOM05D007706 ORTHO05D009593 8.1e-07 59.3 138 35.5
CSS0007043 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 1.1e-06 58.9 86 70.9
Cfa010644 Carpinus fangiana HOM05D001903 ORTHO05D001847 1.1e-06 58.9 71 40.8
Gohir.A07G204400 Gossypium hirsutum HOM05D007706 ORTHO05D009593 1.1e-06 58.9 36 72.2
Gohir.D07G210400 Gossypium hirsutum HOM05D007706 ORTHO05D009593 1.1e-06 58.9 36 72.2
Eucgr.A01320 Eucalyptus grandis HOM05D007706 ORTHO05D009593 1.4e-06 58.5 33 78.8
Psat3g051920 Pisum sativum HOM05D007706 ORTHO05D009593 1.4e-06 58.5 33 75.8
Nitab4.5_0008073g0040 Nicotiana tabacum HOM05D009844 ORTHO05D007252 1.8e-06 58.2 43 60.5
Psat3g053960 Pisum sativum HOM05D007706 ORTHO05D009593 1.8e-06 58.2 87 40.2
TPR.G30860 Trifolium pratense HOM05D003225 ORTHO05D003818 1.8e-06 58.2 33 75.8
Thecc.01G250700 Theobroma cacao HOM05D007706 ORTHO05D009593 2.4e-06 57.8 121 36.4
BcaC09g52017 Brassica carinata HOM05D001903 ORTHO05D001847 3.1e-06 57.4 68 44.1
A01p06030 Brassica napus HOM05D001903 ORTHO05D001847 3.1e-06 57.4 68 44.1
BraA01t00568Z Brassica rapa HOM05D001903 ORTHO05D001847 3.1e-06 57.4 68 44.1
CiPaw.04G190500 Carya illinoinensis HOM05D007706 ORTHO05D009593 3.1e-06 57.4 81 43.2
Gorai.001G237800 Gossypium raimondii HOM05D007706 ORTHO05D009593 3.1e-06 57.4 36 69.4
Medtr7g099260 Medicago truncatula HOM05D007706 ORTHO05D009593 3.1e-06 57.4 33 72.7
vmacro02710 Vaccinium macrocarpon HOM05D007706 ORTHO05D009593 3.1e-06 57.4 179 29.6
Glyma.19G168300 Glycine max HOM05D007706 ORTHO05D009593 4.0e-06 57.0 177 32.8
arahy.Tifrunner.gnm1.ann1.NJ5037 Arachis hypogaea HOM05D007706 ORTHO05D009593 5.2e-06 56.6 110 33.6
CANSAT01G1705 Cannabis sativa HOM05D007706 ORTHO05D009593 5.2e-06 56.6 44 61.4
CiPaw.03G270700 Carya illinoinensis HOM05D007706 ORTHO05D009593 5.2e-06 56.6 44 59.1
Ca_08762_v3 Cicer arietinum L. HOM05D003225 ORTHO05D009593 5.2e-06 56.6 169 34.3
Ca_30216_v3 Cicer arietinum L. HOM05D003225 ORTHO05D003818 5.2e-06 56.6 169 34.3
MD05G1189100 Malus domestica HOM05D007706 ORTHO05D009593 5.2e-06 56.6 173 30.6
Cpa.g.sc87.26 Carica papaya HOM05D007706 ORTHO05D009593 6.8e-06 56.2 117 35.9
Cfa002482 Carpinus fangiana HOM05D007706 ORTHO05D009593 6.8e-06 56.2 80 41.2
Haze_24704 Corylus avellana HOM05D007706 ORTHO05D009593 6.8e-06 56.2 37 64.9
Lsat_1_v5_gn_8_92000 Lactuca sativa HOM05D007706 ORTHO05D009593 6.8e-06 56.2 37 64.9
Potri.002G256900 Populus trichocarpa HOM05D007706 ORTHO05D009593 6.8e-06 56.2 31 77.4
QL09p041349 Quercus lobata HOM05D007706 ORTHO05D009593 6.8e-06 56.2 30 80.0
C01p06630 Brassica napus HOM05D001903 ORTHO05D001847 8.9e-06 55.8 68 44.1
Thhalv10026052m.g Eutrema salsugineum HOM05D001903 ORTHO05D001847 8.9e-06 55.8 68 42.6


User provided reference genes

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