Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p020769 Quercus lobata HOM05D004828 ORTHO05D005713 5.2e-66 254.2 127 100.0
CiPaw.01G179200 Carya illinoinensis HOM05D004828 ORTHO05D005713 1.2e-59 233.0 127 89.8
CSS0001982 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 8.1e-59 230.3 129 88.4
Prupe.1G046500 Prunus persica HOM05D004828 ORTHO05D005713 2.4e-58 228.8 127 87.4
Thecc.04G262300 Theobroma cacao HOM05D004828 ORTHO05D005713 3.1e-58 228.4 127 89.0
CSS0013271 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 5.2e-58 227.6 128 89.1
COL.COLO4_15949 Corchorus olitorius HOM05D004828 ORTHO05D005713 1.2e-57 226.5 126 88.1
TAR362G0439 Trochodendron aralioides HOM05D004828 ORTHO05D005713 1.2e-57 226.5 127 88.2
Duzib212G0408 Durio zibethinus HOM05D004828 ORTHO05D005713 1.5e-57 226.1 131 87.0
Dinv27097 Davidia involucrata HOM05D004828 ORTHO05D005713 2.0e-57 225.7 127 85.0
Dinv29813 Davidia involucrata HOM05D004828 ORTHO05D005713 2.2e-56 222.2 130 86.9
RcHm_v2.0_Chr4g0394991 Rosa chinensis HOM05D004828 ORTHO05D005713 1.4e-55 219.5 127 84.3
FvH4_4g04430 Fragaria vesca HOM05D004828 ORTHO05D005713 1.9e-55 219.2 127 84.3
FAN17G1436 Fragaria x ananassa HOM05D004828 ORTHO05D005713 1.9e-55 219.2 127 84.3
GSVIVG01027902001 Vitis vinifera HOM05D004828 ORTHO05D005713 1.9e-55 219.2 128 85.9
Hma1.2p1_0112F.1_g054580 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 1.2e-54 216.5 127 84.3
Actinidia35812 Actinidia chinensis HOM05D004828 ORTHO05D005713 2.1e-54 215.7 127 85.8
Haze_11447 Corylus avellana HOM05D004828 ORTHO05D005713 4.6e-54 214.5 127 86.6
Potri.008G171000 Populus trichocarpa HOM05D004828 ORTHO05D005713 6.0e-54 214.2 127 82.7
Actinidia39923 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.3e-53 213.0 130 86.9
Cfa014773 Carpinus fangiana HOM05D004828 ORTHO05D005713 1.3e-53 213.0 127 85.8
CiPaw.02G107900 Carya illinoinensis HOM05D004828 ORTHO05D005713 3.9e-53 211.5 127 85.8
Cc03_g06030 Coffea canephora HOM05D004828 ORTHO05D005713 4.3e-52 208.0 127 78.0
MD16G1225200 Malus domestica HOM05D004828 ORTHO05D005713 9.6e-52 206.8 127 79.5
TAR365G0027 Trochodendron aralioides HOM05D004828 ORTHO05D005713 9.6e-52 206.8 122 82.0
Glyma.10G136300 Glycine max HOM05D004828 ORTHO05D005713 1.6e-51 206.1 129 80.6
Oeu055253.1 Olea europaea HOM05D004828 ORTHO05D005713 1.6e-51 206.1 127 81.9
MD13G1219800 Malus domestica HOM05D004828 ORTHO05D005713 2.8e-51 205.3 127 79.5
Duzib151G0671 Durio zibethinus HOM05D004828 ORTHO05D005713 3.6e-51 204.9 127 82.7
PGR004G2594 Punica granatum HOM05D004828 ORTHO05D005713 8.1e-51 203.8 129 81.4
VMungo0720G1886 Vigna mungo HOM05D004828 ORTHO05D005713 8.1e-51 203.8 129 80.6
Glyma.20G085900 Glycine max HOM05D004828 ORTHO05D005713 1.4e-50 203.0 129 79.1
Manes.03G160100 Manihot esculenta HOM05D004828 ORTHO05D005713 1.4e-50 203.0 127 82.7
Oeu059400.1 Olea europaea HOM05D004828 ORTHO05D005713 1.8e-50 202.6 127 79.5
Cpa.g.sc44.12 Carica papaya HOM05D004828 ORTHO05D005713 3.1e-50 201.8 127 77.2
Lsat_1_v5_gn_1_75300 Lactuca sativa HOM05D004828 ORTHO05D005713 3.1e-50 201.8 129 79.8
Psat6g106280 Pisum sativum HOM05D004828 ORTHO05D005713 3.1e-50 201.8 130 80.0
Medtr1g045140 Medicago truncatula HOM05D004828 ORTHO05D005713 5.2e-50 201.1 130 79.2
Phvul.007G271000 Phaseolus vulgaris HOM05D004828 ORTHO05D005713 5.2e-50 201.1 129 79.1
Rhsim04G0173400 Rhododendron simsii HOM05D004828 ORTHO05D005713 5.2e-50 201.1 130 78.5
Aqoxy2G03727 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 1.2e-49 199.9 129 78.3
Lj6g0012692 Lotus japonicus HOM05D004828 ORTHO05D005713 1.2e-49 199.9 127 79.5
CsaV3_3G011780 Cucumis sativus L. HOM05D004828 ORTHO05D005713 2.0e-49 199.1 127 76.4
vmacro15472 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 2.0e-49 199.1 128 81.2
Lalb_Chr01g0020281 Lupinus albus HOM05D004828 ORTHO05D005713 2.6e-49 198.7 128 78.9
Potri.010G066900 Populus trichocarpa HOM05D004828 ORTHO05D005713 2.6e-49 198.7 127 78.0
MELO3C006384.2 Cucumis melo HOM05D004828 ORTHO05D005713 3.4e-49 198.4 127 75.6
Rhsim02G0043000 Rhododendron simsii HOM05D004828 ORTHO05D005713 4.4e-49 198.0 128 81.2
TPR.G23990 Trifolium pratense HOM05D004828 ORTHO05D005713 4.4e-49 198.0 130 79.2
vmacro08545 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 7.6e-49 197.2 129 80.6
HanXRQChr11g0343071 Helianthus annuus HOM05D004828 ORTHO05D005713 9.9e-49 196.8 127 76.4
Aqoxy5G00162 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 1.3e-48 196.4 128 77.3
PSO674G0081 Papaver somniferum HOM05D004828 ORTHO05D005713 2.9e-48 195.3 125 77.6
PSO832G3336 Papaver somniferum HOM05D004828 ORTHO05D005713 2.9e-48 195.3 125 77.6
Eucgr.H02963 Eucalyptus grandis HOM05D004828 ORTHO05D005713 3.8e-48 194.9 127 78.7
Manes.15G044800 Manihot esculenta HOM05D004828 ORTHO05D005713 4.9e-48 194.5 128 80.5
Gohir.D01G023418 Gossypium hirsutum HOM05D004828 ORTHO05D005713 8.4e-48 193.7 127 76.4
Hma1.2p1_0385F.1_g141490 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 8.4e-48 193.7 125 78.4
MELO3C023036.2 Cucumis melo HOM05D004828 ORTHO05D005713 1.9e-47 192.6 129 78.3
CsaV3_2G012500 Cucumis sativus L. HOM05D004828 ORTHO05D005713 1.9e-47 192.6 129 78.3
Sabra10G0040600 Salix brachista HOM05D004828 ORTHO05D005713 1.9e-47 192.6 127 76.4
Ca_11922_v3 Cicer arietinum L. HOM05D004828 ORTHO05D005713 2.4e-47 192.2 129 76.7
Sabra08G0130800 Salix brachista HOM05D004828 ORTHO05D005713 3.2e-47 191.8 127 77.2
arahy.Tifrunner.gnm1.ann1.DHUA7P Arachis hypogaea HOM05D004828 ORTHO05D005713 4.2e-47 191.4 127 78.7
arahy.Tifrunner.gnm1.ann1.P56WT2 Arachis hypogaea HOM05D004828 ORTHO05D005713 4.2e-47 191.4 127 78.7
Ciclev10006216m.g Citrus clementina HOM05D004828 ORTHO05D005713 4.2e-47 191.4 117 82.1
Gorai.002G026400 Gossypium raimondii HOM05D004828 ORTHO05D005713 4.2e-47 191.4 127 75.6
THA.LOC104808875 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 1.6e-46 189.5 133 75.2
Gohir.D10G159300 Gossypium hirsutum HOM05D004828 ORTHO05D005713 2.1e-46 189.1 127 77.2
Gohir.A09G227900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 3.5e-46 188.3 128 77.3
Gohir.D09G228900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 3.5e-46 188.3 128 77.3
Gorai.006G251600 Gossypium raimondii HOM05D004828 ORTHO05D005713 3.5e-46 188.3 128 77.3
HanXRQChr01g0022921 Helianthus annuus HOM05D004828 ORTHO05D005713 6.0e-46 187.6 130 74.6
Sc13g0006160 Simmondsia chinensis HOM05D004828 ORTHO05D005713 6.0e-46 187.6 129 74.4
TWI73G1205 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 6.0e-46 187.6 117 83.8
ClCG06G007210 Citrullus lanatus HOM05D004828 ORTHO05D005713 5.1e-45 184.5 129 76.0
THA.LOC104826602 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 8.7e-45 183.7 131 74.8
BcaC01g03156 Brassica carinata HOM05D004828 ORTHO05D005713 1.1e-44 183.3 131 72.5
C03p55490 Brassica napus HOM05D004828 ORTHO05D005713 1.1e-44 183.3 132 72.0
BolC3t17826H Brassica oleracea HOM05D004828 ORTHO05D005713 1.1e-44 183.3 132 72.0
BcaB06g26846 Brassica carinata HOM05D004828 ORTHO05D005713 1.9e-44 182.6 131 72.5
TWI53G1324 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 2.5e-44 182.2 103 88.3
ECA248G3746 Erigeron canadensis HOM05D002764 ORTHO05D002960 4.3e-44 181.4 117 76.1
Carub.0003s2689 Capsella rubella HOM05D004828 ORTHO05D005713 5.6e-44 181.0 128 75.8
AL3G43120 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 9.6e-44 180.3 131 74.8
Lalb_Chr19g0128491 Lupinus albus HOM05D004828 ORTHO05D005713 1.3e-43 179.9 127 72.4
Sp3g24080 Schrenkiella parvula HOM05D004828 ORTHO05D005713 1.6e-43 179.5 131 74.8
A03p44660 Brassica napus HOM05D004828 ORTHO05D005713 2.1e-43 179.1 127 73.2
BraA03t13600Z Brassica rapa HOM05D004828 ORTHO05D005713 2.1e-43 179.1 127 73.2
Nitab4.5_0001051g0110 Nicotiana tabacum HOM05D004828 ORTHO05D005713 2.1e-43 179.1 125 76.0
Sed0009082 Sechium edule HOM05D004828 ORTHO05D005713 2.1e-43 179.1 124 73.4
AT2G05620 Arabidopsis thaliana HOM05D004828 ORTHO05D005713 2.8e-43 178.7 131 74.8
Atru.chr4.1937 Acer truncatum HOM05D004828 ORTHO05D005713 3.6e-43 178.3 133 74.4
Thhalv10002723m.g Eutrema salsugineum HOM05D004828 ORTHO05D005713 4.8e-43 177.9 131 74.0
Nitab4.5_0002709g0020 Nicotiana tabacum HOM05D004828 ORTHO05D005713 8.1e-43 177.2 125 75.2
BcaC06g35923 Brassica carinata HOM05D004828 ORTHO05D005713 1.1e-42 176.8 131 70.2
C07p09630 Brassica napus HOM05D004828 ORTHO05D005713 1.1e-42 176.8 131 70.2
BolC7t41404H Brassica oleracea HOM05D004828 ORTHO05D005713 1.1e-42 176.8 131 70.2
MSTRG.4162 Avicennia marina HOM05D004828 ORTHO05D005713 1.4e-42 176.4 115 76.5
BcaB08g34505 Brassica carinata HOM05D004828 ORTHO05D005713 1.8e-42 176.0 127 70.9
Lsat_1_v5_gn_6_68641 Lactuca sativa HOM05D004828 ORTHO05D005713 4.0e-42 174.9 128 73.4
Migut.N00294 Erythranthe guttata HOM05D004828 ORTHO05D005713 5.3e-42 174.5 127 69.3
AUR62035095 Chenopodium quinoa HOM05D004828 ORTHO05D005713 6.9e-42 174.1 129 74.4
MBI07_g12928_MAGBIO Magnolia biondii HOM05D004828 ORTHO05D005713 6.9e-42 174.1 130 70.8
Hund03081 Selenicereus undatus HOM05D004828 ORTHO05D005713 6.9e-42 174.1 128 75.0
Gohir.A10G108500 Gossypium hirsutum HOM05D004828 ORTHO05D005713 9.0e-42 173.7 127 71.7
Ah.04g155350 Amaranthus hybridus HOM05D004828 ORTHO05D005713 1.2e-41 173.3 130 73.8
HanXRQChr02g0059331 Helianthus annuus HOM05D004828 ORTHO05D005713 2.0e-41 172.6 127 67.7
EL10Ac3g04953 Beta vulgaris HOM05D004828 ORTHO05D005713 2.6e-41 172.2 130 73.8
Migut.G00486 Erythranthe guttata HOM05D004828 ORTHO05D005713 2.6e-41 172.2 115 75.7
Aa31LG8G11410 Aethionema arabicum HOM05D004828 ORTHO05D005713 5.8e-41 171.0 132 70.5
AUR62016177 Chenopodium quinoa HOM05D004828 ORTHO05D005713 9.9e-41 170.2 129 73.6
FAN12G3003 Fragaria x ananassa HOM05D004828 ORTHO05D005713 1.3e-40 169.9 95 88.4
DCAR_027339 Daucus carota HOM05D004828 ORTHO05D005713 1.7e-40 169.5 102 83.3
Gorai.011G178900 Gossypium raimondii HOM05D004828 ORTHO05D005713 1.7e-40 169.5 127 70.1
Hund27524 Selenicereus undatus HOM05D004828 ORTHO05D005713 1.4e-39 166.4 126 69.0
Hund27531 Selenicereus undatus HOM05D004828 ORTHO05D005713 1.4e-39 166.4 126 69.0
ClCG05G004070 Citrullus lanatus HOM05D002764 ORTHO05D002960 5.4e-39 164.5 95 83.2
CARHR103280 Cardamine hirsuta HOM05D004828 ORTHO05D005713 1.2e-38 163.3 127 70.9
ATR1127G070 Amborella trichopoda HOM05D004828 ORTHO05D005713 2.7e-38 162.2 113 73.5
CAN.G220.85 Capsicum annuum HOM05D004828 ORTHO05D005713 4.6e-38 161.4 109 75.2
SGA_v2.0_scaffold31G12643 Striga asiatica HOM05D004828 ORTHO05D005713 7.9e-38 160.6 113 71.7
PGSC0003DMG400017198 Solanum tuberosum HOM05D004828 ORTHO05D005713 1.0e-37 160.2 109 74.3
unitig_32.g10853 Utricularia gibba HOM05D004828 ORTHO05D005713 2.3e-37 159.1 129 65.9
Sopen09g033510 Solanum pennellii HOM05D004828 ORTHO05D005713 5.1e-37 157.9 109 73.4
Solyc09g090570.2 Solanum lycopersicum HOM05D004828 ORTHO05D005713 5.6e-36 154.5 109 71.6
Os08g0566600 Oryza sativa ssp. japonica HOM05D004828 ORTHO05D005713 1.3e-35 153.3 107 68.2
Nn3g19756 Nelumbo nucifera HOM05D004828 ORTHO05D005713 1.6e-35 152.9 94 80.9
CDE02G2944 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 3.7e-35 151.8 117 68.4
Nn1g02928 Nelumbo nucifera HOM05D004828 ORTHO05D005713 3.7e-35 151.8 93 76.3
Mapoly0121s0039 Marchantia polymorpha HOM05D004828 ORTHO05D005713 1.2e-33 146.7 126 63.5
AagrBONN_evm.TU.Sc2ySwM_117.3192 Anthoceros agrestis HOM05D004828 ORTHO05D005713 2.0e-33 146.0 112 62.5
SEGI_28577 Sequoiadendron giganteum HOM05D004828 ORTHO05D005713 2.6e-33 145.6 87 80.5
Zm00001eb038530 Zea mays HOM05D004828 ORTHO05D005713 5.8e-33 144.4 112 68.8
Zm00001eb175600 Zea mays HOM05D004828 ORTHO05D005713 5.8e-33 144.4 113 69.0
HPP92_008537 Vanilla planifolia HOM05D004828 ORTHO05D005713 7.1e-31 137.5 123 62.6
Peaxi162Scf00033g02911 Petunia axillaris HOM05D004828 ORTHO05D005713 6.0e-30 134.4 127 59.8
Pp3c8_17140 Physcomitrium patens HOM05D004828 ORTHO05D005713 1.3e-29 133.3 110 65.5
CBR_g31156 Chara braunii HOM05D004828 ORTHO05D005713 8.7e-29 130.6 82 76.8
Pp3c24_11690 Physcomitrium patens HOM05D004828 ORTHO05D005713 8.7e-29 130.6 82 80.5
Gohir.A01G025800 Gossypium hirsutum HOM05D004828 ORTHO05D005713 2.5e-28 129.0 93 68.8
Sed0028180 Sechium edule HOM05D004828 ORTHO05D005713 4.8e-27 124.8 122 58.2
Oeu002290.1 Olea europaea HOM05D004828 ORTHO05D005713 8.2e-27 124.0 113 60.2
Actinidia20833 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.5e-25 119.8 68 89.7
MCO16G064 Micromonas commoda HOM05D004828 ORTHO05D005713 2.5e-23 112.5 103 62.1
SalBow3G4432 Salvia bowleyana HOM05D004828 ORTHO05D005713 2.1e-22 109.4 127 55.9
Nn1g09503 Nelumbo nucifera HOM05D004828 ORTHO05D005713 1.8e-21 106.3 72 73.6
AL3G43100 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 5.1e-21 104.8 78 71.8
CDE04G3689 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 5.7e-20 101.3 84 63.1
Cre05.g242400 Chlamydomonas reinhardtii HOM05D004828 ORTHO05D005713 6.9e-18 94.4 81 56.8
Actinidia11366 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.0e-16 90.5 45 100.0
AL3G43090 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 1.3e-16 90.1 69 71.0
PRCOL_00004079 Prasinoderma coloniale HOM05D004828 ORTHO05D005713 1.4e-15 86.7 105 44.8
Lalb_Chr03g0037001 Lupinus albus HOM05D004828 ORTHO05D005713 1.2e-14 83.6 68 58.8
ATR0733G110 Amborella trichopoda HOM05D004828 ORTHO05D005713 7.7e-09 64.3 52 59.6


User provided reference genes

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