Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p019224 Quercus lobata HOM05D005408 ORTHO05D006790 0.0e+00 1775.0 904 100.0
Haze_11418 Corylus avellana HOM05D005408 ORTHO05D006790 0.0e+00 1193.7 953 69.2
Cfa014743 Carpinus fangiana HOM05D005408 ORTHO05D006790 0.0e+00 1172.1 947 68.5
CiPaw.02G109300 Carya illinoinensis HOM05D005408 ORTHO05D006790 0.0e+00 1120.5 951 66.7
Thecc.04G259100 Theobroma cacao HOM05D005408 ORTHO05D006790 0.0e+00 1077.4 929 64.5
CiPaw.01G181400 Carya illinoinensis HOM05D005408 ORTHO05D006790 5.6e-311 1070.8 950 63.6
Dinv27073 Davidia involucrata HOM05D005408 ORTHO05D006790 4.8e-307 1057.7 996 61.1
Prupe.1G042300 Prunus persica HOM05D005408 ORTHO05D006790 1.2e-305 1053.1 992 60.9
Dinv29839 Davidia involucrata HOM05D005408 ORTHO05D006790 3.4e-300 1035.0 952 60.9
Actinidia20821 Actinidia chinensis HOM05D005408 ORTHO05D006790 5.7e-300 1034.2 980 61.5
Potri.010G069200 Populus trichocarpa HOM05D005408 ORTHO05D006790 2.2e-299 1032.3 925 62.8
Duzib151G0888 Durio zibethinus HOM05D005408 ORTHO05D006790 3.7e-299 1031.6 930 62.2
Potri.008G169200 Populus trichocarpa HOM05D005408 ORTHO05D006790 7.0e-298 1027.3 924 62.2
TAR633G1608 Trochodendron aralioides HOM05D005408 ORTHO05D006790 2.0e-297 1025.8 1018 58.0
GSVIVG01027854001 Vitis vinifera HOM05D005408 ORTHO05D006790 1.0e-296 1023.5 935 62.1
TWI09G0385 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 1.4e-293 1013.1 944 60.7
MD16G1222000 Malus domestica HOM05D005408 ORTHO05D006790 2.3e-293 1012.3 974 60.3
Manes.15G043200 Manihot esculenta HOM05D005408 ORTHO05D006790 1.2e-292 1010.0 937 60.2
TWI53G1583 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 1.8e-290 1002.7 959 59.4
Duzib212G0761 Durio zibethinus HOM05D005408 ORTHO05D006790 2.4e-290 1002.3 935 59.8
Manes.15G043300 Manihot esculenta HOM05D005408 ORTHO05D006790 3.2e-290 1001.9 938 59.0
RcHm_v2.0_Chr4g0394291 Rosa chinensis HOM05D005408 ORTHO05D006790 3.2e-290 1001.9 962 59.4
Sabra10G0037900 Salix brachista HOM05D005408 ORTHO05D006790 3.5e-289 998.4 926 61.2
CSS0047984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 1.7e-288 996.1 988 58.4
COL.COLO4_15917 Corchorus olitorius HOM05D005408 ORTHO05D006790 6.6e-288 994.2 929 60.5
Ciclev10004264m.g Citrus clementina HOM05D005408 ORTHO05D006790 1.1e-287 993.4 940 60.3
Atru.chr4.2004 Acer truncatum HOM05D005408 ORTHO05D006790 7.3e-287 990.7 937 60.1
FAN12G0827 Fragaria x ananassa HOM05D005408 ORTHO05D006790 7.3e-287 990.7 927 59.9
Sabra08G0129000 Salix brachista HOM05D005408 ORTHO05D006790 1.2e-286 989.9 947 60.3
FvH4_4g04020 Fragaria vesca HOM05D005408 ORTHO05D006790 7.5e-284 980.7 927 59.5
MD13G1216600 Malus domestica HOM05D005408 ORTHO05D006790 1.4e-282 976.5 978 58.1
Cpa.g.sc44.32 Carica papaya HOM05D005408 ORTHO05D006790 3.5e-281 971.8 947 59.6
FAN17G2537 Fragaria x ananassa HOM05D005408 ORTHO05D006790 1.7e-280 969.5 938 59.0
TAR362G0279 Trochodendron aralioides HOM05D005408 ORTHO05D006790 7.3e-279 964.1 999 55.7
CSS0016984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 3.1e-277 958.7 986 56.9
Gohir.A02G040500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 4.9e-275 951.4 942 57.5
Gohir.D02G046500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 2.4e-274 949.1 933 58.3
Eucgr.H03018 Eucalyptus grandis HOM05D005408 ORTHO05D006790 6.0e-273 944.5 946 57.5
FAN22G0039 Fragaria x ananassa HOM05D005408 ORTHO05D006790 3.0e-272 942.2 981 56.2
ClCG05G004200 Citrullus lanatus HOM05D005408 ORTHO05D006790 8.6e-272 940.6 982 55.3
DCAR_024278 Daucus carota HOM05D005408 ORTHO05D006790 1.1e-269 933.7 944 56.9
Nn1g02867 Nelumbo nucifera HOM05D005408 ORTHO05D006790 1.4e-269 933.3 1040 52.6
Peaxi162Scf00392g00730 Petunia axillaris HOM05D005408 ORTHO05D006790 1.4e-269 933.3 952 56.0
CsaV3_3G011930 Cucumis sativus L. HOM05D005408 ORTHO05D006790 1.2e-268 930.2 978 53.9
CANSAT54G2691 Cannabis sativa HOM05D005408 ORTHO05D006790 2.6e-268 929.1 965 56.6
MELO3C006406.2 Cucumis melo HOM05D005408 ORTHO05D006790 9.9e-268 927.2 976 54.5
Solyc09g090340.3 Solanum lycopersicum HOM05D005408 ORTHO05D006790 1.7e-267 926.4 964 54.8
Sopen09g033240 Solanum pennellii HOM05D005408 ORTHO05D006790 8.4e-267 924.1 970 54.9
AUR62015544 Chenopodium quinoa HOM05D005408 ORTHO05D006790 1.1e-266 923.7 931 56.5
EL10Ac3g04981 Beta vulgaris HOM05D005408 ORTHO05D006790 4.1e-266 921.8 949 55.0
Gorai.005G051300 Gossypium raimondii HOM05D005408 ORTHO05D006790 3.5e-265 918.7 883 59.1
PGSC0003DMG400017212 Solanum tuberosum HOM05D005408 ORTHO05D006790 3.5e-265 918.7 968 54.6
Rhsim02G0041600 Rhododendron simsii HOM05D005408 ORTHO05D006790 6.6e-264 914.4 823 60.5
Lj3A679T38 Lonicera japonica HOM05D005408 ORTHO05D006790 2.4e-261 906.0 1002 53.5
Hma1.2p1_0112F.1_g054305 Hydrangea macrophylla HOM05D005408 ORTHO05D006790 6.8e-261 904.4 696 68.0
AUR62002164 Chenopodium quinoa HOM05D005408 ORTHO05D006790 4.4e-260 901.7 916 56.2
CAN.G220.39 Capsicum annuum HOM05D005408 ORTHO05D006790 2.2e-259 899.4 1004 51.6
Sc19g0003230 Simmondsia chinensis HOM05D005408 ORTHO05D006790 1.4e-258 896.7 935 54.5
Lj3A684T25 Lonicera japonica HOM05D005408 ORTHO05D006790 3.5e-257 892.1 1002 52.8
Oeu002940.1 Olea europaea HOM05D005408 ORTHO05D006790 5.1e-256 888.3 926 55.1
Sed0026902 Sechium edule HOM05D005408 ORTHO05D006790 6.6e-256 887.9 934 54.3
Nitab4.5_0000596g0060 Nicotiana tabacum HOM05D005408 ORTHO05D006790 1.3e-254 883.6 1065 49.9
Nitab4.5_0000044g0530 Nicotiana tabacum HOM05D005408 ORTHO05D006790 8.1e-254 880.9 1017 51.7
PGR004G2334 Punica granatum HOM05D005408 ORTHO05D006790 8.1e-254 880.9 932 56.0
Cc03_g05790 Coffea canephora HOM05D005408 ORTHO05D006790 7.6e-252 874.4 987 53.5
MSTRG.21921 Avicennia marina HOM05D005408 ORTHO05D006790 1.7e-251 873.2 980 51.9
Aa31LG9G3050 Aethionema arabicum HOM05D005408 ORTHO05D006790 1.9e-250 869.8 926 53.7
CARHR220500 Cardamine hirsuta HOM05D005408 ORTHO05D006790 1.9e-250 869.8 942 54.4
MBI07_g31083_MAGBIO Magnolia biondii HOM05D005408 ORTHO05D006790 1.2e-249 867.1 991 51.3
AT4G14310 Arabidopsis thaliana HOM05D005408 ORTHO05D006790 2.7e-249 865.9 933 54.7
SalBow3G0714 Salvia bowleyana HOM05D005408 ORTHO05D006790 2.3e-248 862.8 966 52.3
vmacro15459 Vaccinium macrocarpon HOM05D005408 ORTHO05D006790 1.1e-247 860.5 1114 49.2
PSO832G1937 Papaver somniferum HOM05D005408 ORTHO05D006790 7.4e-247 857.8 987 51.2
Lalb_Chr03g0037341 Lupinus albus HOM05D005408 ORTHO05D006790 1.8e-245 853.2 951 53.5
Sp7g12340 Schrenkiella parvula HOM05D005408 ORTHO05D006790 3.1e-245 852.4 938 53.6
Carub.0007s2798 Capsella rubella HOM05D005408 ORTHO05D006790 2.0e-244 849.7 925 53.3
Oeu005084.1 Olea europaea HOM05D005408 ORTHO05D006790 3.4e-244 849.0 931 52.1
Aqoxy5G00183 Aquilegia oxysepala HOM05D005408 ORTHO05D006790 9.9e-244 847.4 1007 50.4
Hund03055 Selenicereus undatus HOM05D005408 ORTHO05D006790 2.2e-243 846.3 994 50.9
PSO210G0343 Papaver somniferum HOM05D005408 ORTHO05D006790 2.9e-243 845.9 987 51.2
arahy.Tifrunner.gnm1.ann1.NA4LRU Arachis hypogaea HOM05D005408 ORTHO05D006790 3.2e-242 842.4 927 52.3
AL7G41950 Arabidopsis lyrata HOM05D005408 ORTHO05D006790 4.2e-242 842.0 932 52.8
Migut.N00286 Erythranthe guttata HOM05D005408 ORTHO05D006790 9.3e-242 840.9 957 52.2
THA.LOC104804761 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 9.3e-242 840.9 950 52.5
HanXRQChr11g0330791 Helianthus annuus HOM05D005408 ORTHO05D006790 1.3e-240 837.0 962 51.0
arahy.Tifrunner.gnm1.ann1.HQEG75 Arachis hypogaea HOM05D005408 ORTHO05D006790 1.1e-239 833.9 928 52.9
BcaNung06103 Brassica carinata HOM05D005408 ORTHO05D006790 4.0e-237 825.5 912 53.5
Lj6g0021221 Lotus japonicus HOM05D005408 ORTHO05D006790 4.0e-237 825.5 719 60.9
Thhalv10024359m.g Eutrema salsugineum HOM05D005408 ORTHO05D006790 1.1e-234 817.4 939 52.1
ECA248G0134 Erigeron canadensis HOM05D005408 ORTHO05D006790 7.9e-233 811.2 930 51.0
THA.LOC104822240 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 1.0e-232 810.8 954 51.2
C03p76860 Brassica napus HOM05D005408 ORTHO05D006790 1.5e-231 807.0 910 51.6
A08p24350 Brassica napus HOM05D005408 ORTHO05D006790 2.5e-231 806.2 919 52.3
BcaC01g00205 Brassica carinata HOM05D005408 ORTHO05D006790 3.3e-231 805.8 910 51.1
BraA08t34390Z Brassica rapa HOM05D005408 ORTHO05D006790 5.3e-229 798.5 949 50.5
BolC3t19941H Brassica oleracea HOM05D005408 ORTHO05D006790 1.5e-228 797.0 929 50.3
Phvul.007G275400 Phaseolus vulgaris HOM05D005408 ORTHO05D006790 1.4e-226 790.4 662 62.7
VMungo0720G1073 Vigna mungo HOM05D005408 ORTHO05D006790 4.2e-226 788.9 669 62.0
Glyma.02G003800 Glycine max HOM05D005408 ORTHO05D006790 6.1e-225 785.0 667 61.8
Medtr1g041685 Medicago truncatula HOM05D005408 ORTHO05D006790 3.9e-224 782.3 925 50.4
Glyma.10G004700 Glycine max HOM05D005408 ORTHO05D006790 6.7e-224 781.6 676 60.4
Ca_03010_v3 Cicer arietinum L. HOM05D005408 ORTHO05D006790 1.8e-221 773.5 918 52.1
Psat6g104520 Pisum sativum HOM05D005408 ORTHO05D006790 2.4e-221 773.1 736 56.7
TPR.G25189 Trifolium pratense HOM05D005408 ORTHO05D006790 2.0e-220 770.0 676 61.2
SGA_v2.0_scaffold43G16217 Striga asiatica HOM05D005408 ORTHO05D006790 2.6e-220 769.6 972 49.4
Lsat_1_v5_gn_1_74661 Lactuca sativa HOM05D005408 ORTHO05D006790 1.7e-219 766.9 992 47.6
Migut.G00502 Erythranthe guttata HOM05D005408 ORTHO05D006790 2.8e-214 749.6 912 50.9
MSTRG.4147 Avicennia marina HOM05D005408 ORTHO05D006790 1.2e-209 734.2 697 56.4
HanXRQChr01g0023201 Helianthus annuus HOM05D005408 ORTHO05D006790 1.5e-207 727.2 943 48.6
SGA_v2.0_scaffold101G29731 Striga asiatica HOM05D005408 ORTHO05D006790 5.0e-203 712.2 913 47.6
ATR0736G089 Amborella trichopoda HOM05D005408 ORTHO05D006790 3.6e-201 706.1 742 53.0
Zm00001eb258510 Zea mays HOM05D005408 ORTHO05D006790 1.3e-195 687.6 679 54.8
Zm00001eb191660 Zea mays HOM05D005408 ORTHO05D006790 5.0e-195 685.6 677 53.8
CDE04G2551 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 1.2e-175 621.3 1034 41.3
CDE07G1006 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 1.4e-173 614.4 996 42.4
SEGI_14734 Sequoiadendron giganteum HOM05D005408 ORTHO05D006790 4.3e-162 576.2 696 46.8
HPP92_008326 Vanilla planifolia HOM05D005408 ORTHO05D006790 6.8e-160 568.9 635 49.3
unitig_736.g22443 Utricularia gibba HOM05D005408 ORTHO05D006790 1.5e-154 551.2 836 42.2
Ah.13g072600 Amaranthus hybridus HOM05D005408 ORTHO05D006790 3.4e-143 513.5 718 46.5
TPR.G25191 Trifolium pratense HOM05D005408 ORTHO05D006790 1.6e-132 478.0 659 43.4
Mapoly0063s0094 Marchantia polymorpha HOM05D005408 ORTHO05D006790 1.3e-105 388.7 660 35.3
Os02g0809900 Oryza sativa ssp. japonica HOM05D005408 ORTHO05D006790 7.7e-103 379.4 309 59.2
Pp3c25_7300 Physcomitrium patens HOM05D005408 ORTHO05D006790 8.8e-99 365.9 767 34.0
Pp3c16_10130 Physcomitrium patens HOM05D005408 ORTHO05D006790 5.7e-98 363.2 472 40.5
AagrBONN_evm.TU.Sc2ySwM_228.3605 Anthoceros agrestis HOM05D005408 ORTHO05D006790 2.3e-91 341.3 456 41.7
SalBow8G3468 Salvia bowleyana HOM05D005408 ORTHO05D006790 1.6e-39 169.1 115 68.7
SalBow7G4774 Salvia bowleyana HOM05D005408 ORTHO05D006790 3.9e-38 164.5 115 67.8
CiPaw.06G041800 Carya illinoinensis HOM05D005408 ORTHO05D006790 9.5e-37 159.8 321 43.3
CBR_g30942 Chara braunii HOM05D005408 ORTHO05D006790 9.2e-32 143.3 379 29.6
Hund11908 Selenicereus undatus HOM05D005408 ORTHO05D006790 2.0e-26 125.6 146 50.0
Rhsim02G0041700 Rhododendron simsii HOM05D005408 ORTHO05D006790 9.9e-26 123.2 190 41.6
C04p41430 Brassica napus HOM05D005408 ORTHO05D006790 6.4e-17 94.0 142 42.3
BolC4t25724H Brassica oleracea HOM05D005408 ORTHO05D006790 8.4e-17 93.6 142 42.3
A04p07780 Brassica napus HOM05D005408 ORTHO05D006790 1.3e-12 79.7 80 56.2
BolC4t25725H Brassica oleracea HOM05D005408 ORTHO05D006790 9.9e-10 70.1 105 41.0
C04p41440 Brassica napus HOM05D005408 ORTHO05D006790 3.8e-09 68.2 105 41.0
BcaC02g09333 Brassica carinata HOM05D005408 ORTHO05D006790 5.5e-08 64.3 55 60.0
SGA_v2.0_scaffold57G20265 Striga asiatica HOM05D005408 ORTHO05D006790 1.8e-06 59.3 87 48.3


User provided reference genes

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