Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p019149 Quercus lobata HOM05D005831 ORTHO05D007007 8.2e-61 236.9 120 100.0
QL04p096581 Quercus lobata HOM05D005831 ORTHO05D007007 7.4e-38 160.6 100 85.0
QL04p096516 Quercus lobata HOM05D000005 ORTHO05D000012 5.3e-36 154.5 100 83.0
Cfa018014 Carpinus fangiana HOM05D005831 ORTHO05D007007 2.6e-27 125.6 101 67.3
Haze_18115 Corylus avellana HOM05D005831 ORTHO05D007007 4.5e-27 124.8 101 69.3
CiPaw.15G092600 Carya illinoinensis HOM05D005831 ORTHO05D007007 3.2e-25 118.6 100 64.0
GSVIVG01035453001 Vitis vinifera HOM05D005831 ORTHO05D007007 1.2e-24 116.7 101 61.4
Sabra06G0171700 Salix brachista HOM05D005831 ORTHO05D007007 2.0e-22 109.4 133 50.4
Potri.006G222000 Populus trichocarpa HOM05D005831 ORTHO05D007007 7.5e-22 107.5 101 59.4
TAR383G0824 Trochodendron aralioides HOM05D005831 ORTHO05D007007 2.2e-21 105.9 101 61.4
Prupe.1G405700 Prunus persica HOM05D005831 ORTHO05D007007 6.3e-21 104.4 97 63.9
Duzib150G1275 Durio zibethinus HOM05D005831 ORTHO05D007007 4.1e-20 101.7 100 57.0
Thecc.09G062000 Theobroma cacao HOM05D005831 ORTHO05D007007 7.0e-20 100.9 102 58.8
COL.COLO4_21126 Corchorus olitorius HOM05D005831 ORTHO05D007007 2.0e-19 99.4 101 56.4
DCAR_003715 Daucus carota HOM05D005831 ORTHO05D007007 3.5e-19 98.6 100 55.0
Gohir.A07G020300 Gossypium hirsutum HOM05D005831 ORTHO05D007007 4.5e-19 98.2 97 58.8
Manes.03G052700 Manihot esculenta HOM05D005831 ORTHO05D007007 5.9e-19 97.8 101 53.5
CSS0021293 Camellia sinensis var. sinensis HOM05D005831 ORTHO05D007007 7.7e-19 97.4 83 60.2
PSO210G7793 Papaver somniferum HOM05D005831 ORTHO05D007007 7.7e-19 97.4 100 52.0
Dinv41837 Davidia involucrata HOM05D005831 ORTHO05D007007 1.7e-18 96.3 83 62.7
FAN15G1366 Fragaria x ananassa HOM05D005831 ORTHO05D007007 1.7e-18 96.3 101 56.4
FAN20G1335 Fragaria x ananassa HOM05D001583 ORTHO05D007007 1.7e-18 96.3 94 57.4
PSO210G0521 Papaver somniferum HOM05D005831 ORTHO05D007007 1.7e-18 96.3 100 52.0
FAN27G2028 Fragaria x ananassa HOM05D005831 ORTHO05D007007 2.2e-18 95.9 94 57.4
Hma1.2p1_0231F.1_g097400 Hydrangea macrophylla HOM05D005831 ORTHO05D007007 2.2e-18 95.9 101 55.4
Hma1.2p1_0231F.1_g097410 Hydrangea macrophylla HOM05D005831 ORTHO05D007007 2.2e-18 95.9 101 55.4
MD08G1070400 Malus domestica HOM05D005831 ORTHO05D007007 2.2e-18 95.9 97 58.8
MBI19_g11845_MAGBIO Magnolia biondii HOM05D005831 ORTHO05D007007 2.9e-18 95.5 101 56.4
Gorai.001G020700 Gossypium raimondii HOM05D005831 ORTHO05D007007 3.8e-18 95.1 97 58.8
Lalb_Chr09g0334801 Lupinus albus HOM05D005831 ORTHO05D007007 3.8e-18 95.1 101 55.4
TWI38G0260 Tripterygium wilfordii HOM05D005831 ORTHO05D007007 3.8e-18 95.1 100 56.0
FvH4_2g31140 Fragaria vesca HOM05D005831 ORTHO05D007007 5.0e-18 94.7 101 56.4
FAN24G1737 Fragaria x ananassa HOM05D005831 ORTHO05D007007 5.0e-18 94.7 101 56.4
Cpa.g.sc126.34 Carica papaya HOM05D005831 ORTHO05D007007 8.5e-18 94.0 101 54.5
Actinidia25695 Actinidia chinensis HOM05D005831 ORTHO05D007007 1.1e-17 93.6 101 53.5
Nn8g38706 Nelumbo nucifera HOM05D005831 ORTHO05D007007 1.1e-17 93.6 101 56.4
vmacro07801 Vaccinium macrocarpon HOM05D005831 ORTHO05D007007 1.1e-17 93.6 101 53.5
MSTRG.25981 Avicennia marina HOM05D005831 ORTHO05D007007 1.5e-17 93.2 101 52.5
MD15G1051800 Malus domestica HOM05D005831 ORTHO05D007007 4.2e-17 91.7 97 57.7
ClCG05G015690 Citrullus lanatus HOM05D005831 ORTHO05D007007 5.5e-17 91.3 100 52.0
Ciclev10025877m.g Citrus clementina HOM05D005831 ORTHO05D007007 5.5e-17 91.3 100 56.0
RcHm_v2.0_Chr6g0311631 Rosa chinensis HOM05D005831 ORTHO05D007007 7.2e-17 90.9 101 56.4
Lj2A627G34 Lonicera japonica HOM05D005831 ORTHO05D007007 9.4e-17 90.5 93 53.8
Peaxi162Scf00101g01522 Petunia axillaris HOM05D005831 ORTHO05D007007 1.2e-16 90.1 97 49.5
Sed0012871 Sechium edule HOM05D005831 ORTHO05D007007 1.6e-16 89.7 100 50.0
TPR.G38878 Trifolium pratense HOM05D005831 ORTHO05D007007 1.6e-16 89.7 121 48.8
Medtr1g015390 Medicago truncatula HOM05D005831 ORTHO05D007007 2.7e-16 89.0 101 53.5
Solyc04g080930.4 Solanum lycopersicum HOM05D005831 ORTHO05D007007 2.7e-16 89.0 101 48.5
Sopen04g034540 Solanum pennellii HOM05D005831 ORTHO05D007007 2.7e-16 89.0 101 48.5
CAN.G6.15 Capsicum annuum HOM05D005831 ORTHO05D007007 4.7e-16 88.2 101 48.5
Lj5g0001901 Lotus japonicus HOM05D005831 ORTHO05D007007 4.7e-16 88.2 101 50.5
Sed0000493 Sechium edule HOM05D005831 ORTHO05D007007 6.1e-16 87.8 97 52.6
PGSC0003DMG400003758 Solanum tuberosum HOM05D005831 ORTHO05D007007 8.0e-16 87.4 101 46.5
CANSAT25G0005 Cannabis sativa HOM05D005831 ORTHO05D007007 1.0e-15 87.0 102 53.9
Gohir.D07G020000 Gossypium hirsutum HOM05D005831 ORTHO05D007007 1.0e-15 87.0 107 53.3
CsaV3_4G036010 Cucumis sativus L. HOM05D005831 ORTHO05D007007 1.4e-15 86.7 100 50.0
HanXRQChr12g0359011 Helianthus annuus HOM05D005831 ORTHO05D007007 1.4e-15 86.7 100 54.0
TWI15G0825 Tripterygium wilfordii HOM05D005831 ORTHO05D007007 1.4e-15 86.7 100 52.0
Cc08_g01270 Coffea canephora HOM05D005831 ORTHO05D007007 1.8e-15 86.3 104 51.0
Aqoxy3G01546 Aquilegia oxysepala HOM05D005831 ORTHO05D007007 3.0e-15 85.5 102 52.9
Oeu027284.3 Olea europaea HOM05D005831 ORTHO05D007007 3.0e-15 85.5 97 49.5
Aqoxy2G00096 Aquilegia oxysepala HOM05D005831 ORTHO05D007007 5.2e-15 84.7 94 52.1
PGR004G2090 Punica granatum HOM05D005831 ORTHO05D007007 8.8e-15 84.0 101 50.5
Nitab4.5_0000446g0240 Nicotiana tabacum HOM05D005831 ORTHO05D007007 1.2e-14 83.6 97 47.4
VMungo0647G0599 Vigna mungo HOM05D005831 ORTHO05D007007 1.2e-14 83.6 101 50.5
Aqoxy5G02406 Aquilegia oxysepala HOM05D005831 ORTHO05D007007 1.5e-14 83.2 95 53.7
Migut.A00086 Erythranthe guttata HOM05D005831 ORTHO05D007007 1.5e-14 83.2 100 52.0
Sp4g07000 Schrenkiella parvula HOM05D005831 ORTHO05D007007 2.6e-14 82.4 101 46.5
arahy.Tifrunner.gnm1.ann1.2ULK6I Arachis hypogaea HOM05D005831 ORTHO05D007007 4.4e-14 81.6 100 47.0
AUR62020581 Chenopodium quinoa HOM05D005831 ORTHO05D007007 4.4e-14 81.6 101 52.5
Lsat_1_v5_gn_5_79500 Lactuca sativa HOM05D005831 ORTHO05D007007 5.7e-14 81.3 102 51.0
Aa31LG5G18500 Aethionema arabicum HOM05D005831 ORTHO05D007007 7.5e-14 80.9 103 45.6
Migut.A00085 Erythranthe guttata HOM05D005831 ORTHO05D007007 7.5e-14 80.9 100 52.0
Aqoxy3G01853 Aquilegia oxysepala HOM05D005831 ORTHO05D007007 9.8e-14 80.5 94 53.2
Psat6g022600 Pisum sativum HOM05D005831 ORTHO05D007007 9.8e-14 80.5 101 49.5
Eucgr.C03149 Eucalyptus grandis HOM05D005831 ORTHO05D007007 1.3e-13 80.1 98 49.0
Glyma.14G099100 Glycine max HOM05D005831 ORTHO05D007007 2.2e-13 79.3 101 48.5
Phvul.001G039000 Phaseolus vulgaris HOM05D005831 ORTHO05D007007 2.2e-13 79.3 101 48.5
SHI18844 Sapria himalayana HOM05D005831 ORTHO05D007007 2.2e-13 79.3 102 47.1
THA.LOC104806019 Tarenaya hassleriana HOM05D005831 ORTHO05D007007 2.2e-13 79.3 102 47.1
ECA234G1597 Erigeron canadensis HOM05D005831 ORTHO05D007007 3.7e-13 78.6 100 49.0
Thhalv10002014m.g Eutrema salsugineum HOM05D005831 ORTHO05D007007 4.8e-13 78.2 101 45.5
Rhsim03G0040100 Rhododendron simsii HOM05D005831 ORTHO05D007007 4.8e-13 78.2 83 54.2
HPP92_027843 Vanilla planifolia HOM05D005831 ORTHO05D007007 4.8e-13 78.2 101 49.5
Nitab4.5_0009773g0010 Nicotiana tabacum HOM05D005831 ORTHO05D007007 8.3e-13 77.4 97 45.4
Sc09g0010090 Simmondsia chinensis HOM05D005831 ORTHO05D007007 8.3e-13 77.4 100 52.0
Glyma.17G225600 Glycine max HOM05D005831 ORTHO05D007007 1.1e-12 77.0 97 50.5
EL10Ac2g03793 Beta vulgaris HOM05D005831 ORTHO05D007007 9.1e-12 73.9 101 45.5
CDE06G1722 Ceratophyllum demersum HOM05D005831 ORTHO05D007007 2.0e-11 72.8 101 47.5
SalBow4G2055 Salvia bowleyana HOM05D005831 ORTHO05D001900 2.0e-11 72.8 100 43.0
SGA_v2.0_scaffold64G21865 Striga asiatica HOM05D005831 ORTHO05D007007 2.0e-11 72.8 96 44.8
TPR.G10653 Trifolium pratense HOM05D005831 ORTHO05D007007 2.7e-11 72.4 67 59.7
ATR0598G074 Amborella trichopoda HOM05D005831 ORTHO05D007007 3.5e-11 72.0 104 45.2
AL4G18970 Arabidopsis lyrata HOM05D005831 ORTHO05D007007 3.5e-11 72.0 89 48.3
Carub.0004s0626 Capsella rubella HOM05D005831 ORTHO05D007007 4.5e-11 71.6 89 49.4
unitig_748.g8240 Utricularia gibba HOM05D005831 ORTHO05D007007 1.0e-10 70.5 101 42.6
AT2G26350 Arabidopsis thaliana HOM05D005831 ORTHO05D007007 2.9e-10 68.9 73 49.3
Ca_13107_v3 Cicer arietinum L. HOM05D005831 ORTHO05D007007 2.9e-10 68.9 101 45.5
BcaB08g35248 Brassica carinata HOM05D005831 ORTHO05D007007 8.6e-10 67.4 100 43.0
Atru.chr7.1858 Acer truncatum HOM05D005831 ORTHO05D007007 1.5e-09 66.6 73 53.4
Os07g0608800 Oryza sativa ssp. japonica HOM05D005831 ORTHO05D007007 7.2e-09 64.3 97 39.2
TPR.G40658 Trifolium pratense HOM05D005831 ORTHO05D007007 2.1e-08 62.8 71 52.1
Actinidia27570 Actinidia chinensis HOM05D005831 ORTHO05D007007 3.6e-08 62.0 59 57.6
SEGI_09079 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 4.7e-08 61.6 100 38.0
A09p54720 Brassica napus HOM05D005831 ORTHO05D007007 1.8e-07 59.7 52 55.8
A09p55230 Brassica napus HOM05D005831 ORTHO05D007007 1.8e-07 59.7 52 55.8
BraA09t40881Z Brassica rapa HOM05D005831 ORTHO05D007007 1.8e-07 59.7 52 55.8
BcaC07g40824 Brassica carinata HOM05D005831 ORTHO05D007007 5.2e-07 58.2 52 53.8
C08p38160 Brassica napus HOM05D005831 ORTHO05D007007 5.2e-07 58.2 52 53.8
BolC8t51391H Brassica oleracea HOM05D005831 ORTHO05D007007 5.2e-07 58.2 52 53.8
BraA09t40930Z Brassica rapa HOM05D005831 ORTHO05D007007 5.2e-07 58.2 52 55.8
Zm00001eb108960 Zea mays HOM05D005831 ORTHO05D007007 9.8e-06 53.9 46 45.7


User provided reference genes

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