Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p018008 Quercus lobata HOM05D007526 ORTHO05D009350 3.6e-97 358.2 179 100.0
QL06p017957 Quercus lobata HOM05D007526 ORTHO05D009350 1.4e-56 223.4 120 93.3
Cfa022958 Carpinus fangiana HOM05D007526 ORTHO05D009350 6.5e-30 134.8 114 65.8
Haze_11381 Corylus avellana HOM05D007526 ORTHO05D009350 9.4e-29 131.0 111 64.9
Duzib151G1045 Durio zibethinus HOM05D007526 ORTHO05D009350 1.8e-24 116.7 187 39.0
RcHm_v2.0_Chr4g0393211 Rosa chinensis HOM05D007526 ORTHO05D009350 2.4e-24 116.3 116 62.1
Lj6g0011756 Lotus japonicus HOM05D007526 ORTHO05D009350 2.0e-23 113.2 109 56.9
Thecc.04G255400 Theobroma cacao HOM05D007526 ORTHO05D009350 5.9e-23 111.7 118 51.7
CiPaw.01G184600 Carya illinoinensis HOM05D007526 ORTHO05D009350 1.0e-22 110.9 101 64.4
Prupe.1G039600 Prunus persica HOM05D007526 ORTHO05D009350 1.0e-22 110.9 120 57.5
FAN17G0331 Fragaria x ananassa HOM05D007526 ORTHO05D009350 2.2e-22 109.8 116 57.8
Glyma.10G181000 Glycine max HOM05D007526 ORTHO05D009350 3.8e-22 109.0 113 54.9
Glyma.20G209500 Glycine max HOM05D007526 ORTHO05D009350 3.8e-22 109.0 125 52.0
FvH4_4g03670 Fragaria vesca HOM05D007526 ORTHO05D009350 8.5e-22 107.8 116 58.6
FAN12G2381 Fragaria x ananassa HOM05D007526 ORTHO05D009350 8.5e-22 107.8 116 58.6
MD16G1219200 Malus domestica HOM05D007526 ORTHO05D009350 1.5e-21 107.1 121 56.2
VMungo0720G1630 Vigna mungo HOM05D007526 ORTHO05D009350 2.5e-21 106.3 106 58.5
MD13G1214200 Malus domestica HOM05D007526 ORTHO05D009350 1.6e-20 103.6 120 54.2
Duzib212G0007 Durio zibethinus HOM05D007526 ORTHO05D009350 4.7e-20 102.1 120 50.0
Phvul.007G108400 Phaseolus vulgaris HOM05D007526 ORTHO05D009350 8.0e-20 101.3 106 57.5
TPR.G1498 Trifolium pratense HOM05D007526 ORTHO05D009350 2.3e-19 99.8 107 52.3
Lalb_Chr19g0128211 Lupinus albus HOM05D007526 ORTHO05D009350 3.0e-19 99.4 120 52.5
CsaV3_3G012050 Cucumis sativus L. HOM05D007526 ORTHO05D009350 6.8e-19 98.2 119 53.8
MELO3C006420.2 Cucumis melo HOM05D007526 ORTHO05D009350 8.8e-19 97.8 114 55.3
TWI09G0237 Tripterygium wilfordii HOM05D007526 ORTHO05D009350 1.2e-18 97.4 193 40.4
arahy.Tifrunner.gnm1.ann1.STCN49 Arachis hypogaea HOM05D007526 ORTHO05D009350 2.6e-18 96.3 113 53.1
Glyma.10G006400 Glycine max HOM05D007526 ORTHO05D009350 2.6e-18 96.3 150 44.0
Medtr1g076110 Medicago truncatula HOM05D007526 ORTHO05D009350 3.4e-18 95.9 101 55.4
Sed0008521 Sechium edule HOM05D007526 ORTHO05D009350 3.4e-18 95.9 114 52.6
arahy.Tifrunner.gnm1.ann1.582VFN Arachis hypogaea HOM05D007526 ORTHO05D009350 5.7e-18 95.1 113 52.2
Ciclev10005975m.g Citrus clementina HOM05D007526 ORTHO05D009350 5.7e-18 95.1 119 52.1
Manes.03G164000 Manihot esculenta HOM05D007526 ORTHO05D009350 7.5e-18 94.7 112 51.8
VMungo0720G0856 Vigna mungo HOM05D007526 ORTHO05D009350 9.8e-18 94.4 161 39.8
Glyma.20G209600 Glycine max HOM05D007526 ORTHO05D009350 1.3e-17 94.0 105 50.5
Glyma.02G005400 Glycine max HOM05D007526 ORTHO05D009350 2.2e-17 93.2 135 45.9
Gorai.006G253500 Gossypium raimondii HOM05D007526 ORTHO05D009350 2.2e-17 93.2 116 52.6
Gohir.A09G229800 Gossypium hirsutum HOM05D007526 ORTHO05D009350 2.8e-17 92.8 116 52.6
TPR.G25185 Trifolium pratense HOM05D007526 ORTHO05D009350 4.8e-17 92.0 121 45.5
Medtr1g042820 Medicago truncatula HOM05D007526 ORTHO05D009350 6.3e-17 91.7 114 50.0
Eucgr.H03043 Eucalyptus grandis HOM05D007526 ORTHO05D009350 1.1e-16 90.9 116 46.6
Cpa.g.sc44.57 Carica papaya HOM05D007526 ORTHO05D009350 1.4e-16 90.5 112 51.8
Potri.008G167200 Populus trichocarpa HOM05D007526 ORTHO05D009350 1.8e-16 90.1 104 54.8
Manes.15G040900 Manihot esculenta HOM05D007526 ORTHO05D009350 4.1e-16 89.0 127 48.0
Lj5g0022077 Lotus japonicus HOM05D007526 ORTHO05D009350 1.6e-15 87.0 134 41.8
Psat6g104840 Pisum sativum HOM05D007526 ORTHO05D009350 4.5e-15 85.5 109 47.7
Atru.chr4.2058 Acer truncatum HOM05D007526 ORTHO05D009350 1.3e-14 84.0 111 48.6
CANSAT78G2320 Cannabis sativa HOM05D007526 ORTHO05D009350 1.7e-14 83.6 135 46.7
Lalb_Chr10g0098881 Lupinus albus HOM05D007526 ORTHO05D009350 2.2e-14 83.2 107 47.7
Sabra08G0127400 Salix brachista HOM05D007526 ORTHO05D009350 1.9e-13 80.1 114 47.4
CSS0033898 Camellia sinensis var. sinensis HOM05D007526 ORTHO05D009350 3.2e-13 79.3 137 41.6
Phvul.007G273600 Phaseolus vulgaris HOM05D007526 ORTHO05D009350 9.4e-13 77.8 51 76.5
Carub.0007s2786 Capsella rubella HOM05D007526 ORTHO05D009350 2.7e-12 76.3 53 73.6
Sp3g20910 Schrenkiella parvula HOM05D007526 ORTHO05D009350 2.7e-12 76.3 54 70.4
Thhalv10026764m.g Eutrema salsugineum HOM05D007526 ORTHO05D009350 3.6e-12 75.9 53 73.6
BcaB02g08612 Brassica carinata HOM05D007526 ORTHO05D009350 8.0e-12 74.7 53 71.7
A04p07660 Brassica napus HOM05D007526 ORTHO05D009350 8.0e-12 74.7 53 71.7
C04p41350 Brassica napus HOM05D007526 ORTHO05D009350 8.0e-12 74.7 53 71.7
BraA04t16457Z Brassica rapa HOM05D007526 ORTHO05D009350 8.0e-12 74.7 53 71.7
AL7G41840 Arabidopsis lyrata HOM05D007526 ORTHO05D009350 1.0e-11 74.3 53 71.7
AT4G14380 Arabidopsis thaliana HOM05D007526 ORTHO05D009350 1.0e-11 74.3 53 71.7
CARHR220600 Cardamine hirsuta HOM05D007526 ORTHO05D009350 1.4e-11 73.9 71 59.2
COL.COLO4_15878 Corchorus olitorius HOM05D007526 ORTHO05D009350 1.4e-11 73.9 81 50.6
BcaC02g09320 Brassica carinata HOM05D007526 ORTHO05D009350 1.8e-11 73.6 53 69.8
BolC4t25713H Brassica oleracea HOM05D007526 ORTHO05D009350 1.8e-11 73.6 53 69.8
BolC7t41918H Brassica oleracea HOM05D007526 ORTHO05D009350 3.0e-11 72.8 137 34.3
Cc03_g05540 Coffea canephora HOM05D007526 ORTHO05D009350 3.0e-11 72.8 115 43.5
Sp7g12460 Schrenkiella parvula HOM05D007526 ORTHO05D009350 3.0e-11 72.8 53 69.8
Glyma.10G180900 Glycine max HOM05D007526 ORTHO05D009350 5.2e-11 72.0 109 43.1
PGR004G2347 Punica granatum HOM05D007526 ORTHO05D009350 5.2e-11 72.0 127 42.5
THA.LOC104808623 Tarenaya hassleriana HOM05D007526 ORTHO05D009350 5.2e-11 72.0 74 52.7
BraA07t28719Z Brassica rapa HOM05D007526 ORTHO05D009350 8.8e-11 71.2 87 48.3
AL3G37924 Arabidopsis lyrata HOM05D007526 ORTHO05D009350 1.5e-10 70.5 54 64.8
CSS0016058 Camellia sinensis var. sinensis HOM05D007526 ORTHO05D009350 1.5e-10 70.5 113 41.6
DCAR_027319 Daucus carota HOM05D007526 ORTHO05D009350 3.4e-10 69.3 124 41.1
Sopen09g033060 Solanum pennellii HOM05D007526 ORTHO05D009350 3.4e-10 69.3 181 30.4
CARHR099230 Cardamine hirsuta HOM05D007526 ORTHO05D009350 5.7e-10 68.6 74 52.7
TAR636G0759 Trochodendron aralioides HOM05D007526 ORTHO05D009350 5.7e-10 68.6 110 45.5
C07p14270 Brassica napus HOM05D007526 ORTHO05D009350 7.5e-10 68.2 133 33.1
Thhalv10022185m.g Eutrema salsugineum HOM05D007526 ORTHO05D009350 7.5e-10 68.2 54 64.8
A07p09230 Brassica napus HOM05D007526 ORTHO05D009350 2.2e-09 66.6 83 47.0
Hma1.2p1_0267F.1_g107260 Hydrangea macrophylla HOM05D007526 ORTHO05D009350 2.8e-09 66.2 74 54.1
Aa31LG9G2940 Aethionema arabicum HOM05D007526 ORTHO05D009350 3.7e-09 65.9 47 68.1
TAR365G0977 Trochodendron aralioides HOM05D007526 ORTHO05D009350 3.7e-09 65.9 111 43.2
Dinv27054 Davidia involucrata HOM05D007526 ORTHO05D009350 6.3e-09 65.1 86 52.3
PGSC0003DMG400017266 Solanum tuberosum HOM05D007526 ORTHO05D009350 6.3e-09 65.1 184 29.3
EL10Ac3g05005 Beta vulgaris HOM05D007526 ORTHO05D009350 1.1e-08 64.3 126 38.1
MBI07_g16245_MAGBIO Magnolia biondii HOM05D007526 ORTHO05D009350 1.8e-08 63.5 113 38.9
Oeu055231.1 Olea europaea HOM05D007526 ORTHO05D009350 5.4e-08 62.0 117 39.3
QL03p043672 Quercus lobata HOM05D000003 ORTHO05D000006 5.4e-08 62.0 111 36.0
Ca_09865_v3 Cicer arietinum L. HOM05D007526 ORTHO05D009350 2.0e-07 60.1 119 35.3
Ah.04g155760 Amaranthus hybridus HOM05D007526 ORTHO05D009350 7.7e-07 58.2 127 35.4
Hma1.2p1_0576F.1_g182070 Hydrangea macrophylla HOM05D008367 ORTHO05D010529 1.3e-06 57.4 117 37.6
Actinidia01843 Actinidia chinensis HOM05D007526 ORTHO05D009350 2.9e-06 56.2 44 72.7
QL09p030600 Quercus lobata HOM05D000003 ORTHO05D000006 2.9e-06 56.2 80 41.2


User provided reference genes

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