Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p017957 Quercus lobata HOM05D007526 ORTHO05D009350 2.9e-94 348.6 178 100.0
QL06p018008 Quercus lobata HOM05D007526 ORTHO05D009350 9.0e-56 220.7 120 93.3
Cfa022958 Carpinus fangiana HOM05D007526 ORTHO05D009350 3.5e-52 208.8 187 66.8
Haze_11381 Corylus avellana HOM05D007526 ORTHO05D009350 4.6e-52 208.4 187 67.4
CiPaw.01G184600 Carya illinoinensis HOM05D007526 ORTHO05D009350 4.2e-45 185.3 191 61.3
RcHm_v2.0_Chr4g0393211 Rosa chinensis HOM05D007526 ORTHO05D009350 9.0e-40 167.5 192 58.3
FvH4_4g03670 Fragaria vesca HOM05D007526 ORTHO05D009350 1.9e-37 159.8 192 55.7
FAN17G0331 Fragaria x ananassa HOM05D007526 ORTHO05D009350 1.9e-37 159.8 192 54.7
FAN12G2381 Fragaria x ananassa HOM05D007526 ORTHO05D009350 2.5e-37 159.5 192 55.7
Prupe.1G039600 Prunus persica HOM05D007526 ORTHO05D009350 3.3e-34 149.1 214 50.9
Lj6g0011756 Lotus japonicus HOM05D007526 ORTHO05D009350 4.3e-34 148.7 180 51.1
Duzib151G1045 Durio zibethinus HOM05D007526 ORTHO05D009350 2.2e-33 146.4 200 46.0
Glyma.20G209500 Glycine max HOM05D007526 ORTHO05D009350 2.2e-33 146.4 181 51.4
Thecc.04G255400 Theobroma cacao HOM05D007526 ORTHO05D009350 6.3e-33 144.8 194 46.4
MD13G1214200 Malus domestica HOM05D007526 ORTHO05D009350 1.8e-32 143.3 213 48.8
Duzib212G0007 Durio zibethinus HOM05D007526 ORTHO05D009350 4.1e-32 142.1 196 46.9
MD16G1219200 Malus domestica HOM05D007526 ORTHO05D009350 6.9e-32 141.4 214 49.1
VMungo0720G1630 Vigna mungo HOM05D007526 ORTHO05D009350 6.9e-32 141.4 193 51.3
Glyma.10G181000 Glycine max HOM05D007526 ORTHO05D009350 2.0e-31 139.8 185 50.3
Ciclev10005975m.g Citrus clementina HOM05D007526 ORTHO05D009350 2.6e-31 139.4 191 49.7
Atru.chr4.2058 Acer truncatum HOM05D007526 ORTHO05D009350 6.5e-30 134.8 186 50.5
Potri.008G167200 Populus trichocarpa HOM05D007526 ORTHO05D009350 2.5e-29 132.9 194 51.0
TWI09G0237 Tripterygium wilfordii HOM05D007526 ORTHO05D009350 4.2e-29 132.1 194 49.5
Glyma.02G005400 Glycine max HOM05D007526 ORTHO05D009350 6.1e-28 128.3 208 44.7
Manes.03G164000 Manihot esculenta HOM05D007526 ORTHO05D009350 6.1e-28 128.3 198 46.5
Lalb_Chr19g0128211 Lupinus albus HOM05D007526 ORTHO05D009350 7.9e-28 127.9 195 47.7
VMungo0720G0856 Vigna mungo HOM05D007526 ORTHO05D009350 7.9e-28 127.9 237 40.1
MELO3C006420.2 Cucumis melo HOM05D007526 ORTHO05D009350 3.0e-27 125.9 201 45.8
Medtr1g042820 Medicago truncatula HOM05D007526 ORTHO05D009350 3.0e-27 125.9 191 46.1
Sabra08G0127400 Salix brachista HOM05D007526 ORTHO05D009350 3.0e-27 125.9 181 51.4
arahy.Tifrunner.gnm1.ann1.STCN49 Arachis hypogaea HOM05D007526 ORTHO05D009350 3.9e-27 125.6 196 46.4
Glyma.10G006400 Glycine max HOM05D007526 ORTHO05D009350 3.9e-27 125.6 218 42.7
CsaV3_3G012050 Cucumis sativus L. HOM05D007526 ORTHO05D009350 5.1e-27 125.2 203 46.8
arahy.Tifrunner.gnm1.ann1.582VFN Arachis hypogaea HOM05D007526 ORTHO05D009350 6.7e-27 124.8 196 45.9
Gohir.A09G229800 Gossypium hirsutum HOM05D007526 ORTHO05D009350 1.5e-26 123.6 195 46.7
Gorai.006G253500 Gossypium raimondii HOM05D007526 ORTHO05D009350 2.5e-26 122.9 193 46.6
Phvul.007G108400 Phaseolus vulgaris HOM05D007526 ORTHO05D009350 4.3e-26 122.1 187 48.7
Eucgr.H03043 Eucalyptus grandis HOM05D007526 ORTHO05D009350 5.7e-26 121.7 197 41.6
Sed0008521 Sechium edule HOM05D007526 ORTHO05D009350 2.2e-25 119.8 196 45.4
Glyma.20G209600 Glycine max HOM05D007526 ORTHO05D009350 2.8e-25 119.4 176 44.3
Lj5g0022077 Lotus japonicus HOM05D007526 ORTHO05D009350 2.8e-25 119.4 197 42.6
Psat6g104840 Pisum sativum HOM05D007526 ORTHO05D009350 3.7e-25 119.0 188 44.1
CSS0033898 Camellia sinensis var. sinensis HOM05D007526 ORTHO05D009350 3.1e-24 115.9 192 43.2
Cpa.g.sc44.57 Carica papaya HOM05D007526 ORTHO05D009350 2.0e-23 113.2 185 46.5
Manes.15G040900 Manihot esculenta HOM05D007526 ORTHO05D009350 2.0e-23 113.2 205 43.9
TPR.G25185 Trifolium pratense HOM05D007526 ORTHO05D009350 1.3e-22 110.5 195 39.0
Phvul.007G273600 Phaseolus vulgaris HOM05D007526 ORTHO05D009350 1.4e-21 107.1 231 38.5
CSS0016058 Camellia sinensis var. sinensis HOM05D007526 ORTHO05D009350 4.2e-21 105.5 194 40.7
PGR004G2347 Punica granatum HOM05D007526 ORTHO05D009350 5.5e-21 105.1 200 43.0
Cc03_g05540 Coffea canephora HOM05D007526 ORTHO05D009350 7.2e-21 104.8 187 44.9
TAR365G0977 Trochodendron aralioides HOM05D007526 ORTHO05D009350 4.7e-20 102.1 184 45.1
TAR636G0759 Trochodendron aralioides HOM05D007526 ORTHO05D009350 7.9e-20 101.3 187 44.9
TPR.G1498 Trifolium pratense HOM05D007526 ORTHO05D009350 2.3e-19 99.8 144 45.8
Aqoxy5G00249 Aquilegia oxysepala HOM05D007526 ORTHO05D009350 3.0e-19 99.4 222 40.5
Lalb_Chr10g0098881 Lupinus albus HOM05D007526 ORTHO05D009350 9.7e-18 94.4 179 42.5
Medtr1g076110 Medicago truncatula HOM05D007526 ORTHO05D009350 1.7e-17 93.6 148 43.2
Glyma.10G180900 Glycine max HOM05D007526 ORTHO05D009350 3.7e-17 92.4 185 38.9
Sp3g20910 Schrenkiella parvula HOM05D007526 ORTHO05D009350 4.8e-17 92.0 196 38.8
THA.LOC104808623 Tarenaya hassleriana HOM05D007526 ORTHO05D009350 8.2e-17 91.3 194 37.1
CANSAT78G2320 Cannabis sativa HOM05D007526 ORTHO05D009350 1.1e-16 90.9 225 39.1
Sopen09g033060 Solanum pennellii HOM05D007526 ORTHO05D009350 1.1e-16 90.9 229 32.3
BraA04t16457Z Brassica rapa HOM05D007526 ORTHO05D009350 4.1e-16 89.0 190 37.4
CARHR220600 Cardamine hirsuta HOM05D007526 ORTHO05D009350 5.3e-16 88.6 194 36.1
Thhalv10026764m.g Eutrema salsugineum HOM05D007526 ORTHO05D009350 6.9e-16 88.2 201 36.3
AL7G41840 Arabidopsis lyrata HOM05D007526 ORTHO05D009350 9.1e-16 87.8 194 37.1
MBI07_g16245_MAGBIO Magnolia biondii HOM05D007526 ORTHO05D009350 1.5e-15 87.0 186 39.2
DCAR_027319 Daucus carota HOM05D007526 ORTHO05D009350 2.0e-15 86.7 190 38.4
BcaC02g09320 Brassica carinata HOM05D007526 ORTHO05D009350 3.4e-15 85.9 198 34.3
A04p07660 Brassica napus HOM05D007526 ORTHO05D009350 3.4e-15 85.9 201 35.3
BolC4t25713H Brassica oleracea HOM05D007526 ORTHO05D009350 3.4e-15 85.9 198 34.3
BolC7t41918H Brassica oleracea HOM05D007526 ORTHO05D009350 5.9e-15 85.1 191 34.6
C04p41350 Brassica napus HOM05D007526 ORTHO05D009350 1.3e-14 84.0 198 34.3
Sp7g12460 Schrenkiella parvula HOM05D007526 ORTHO05D009350 1.7e-14 83.6 194 34.5
CARHR099230 Cardamine hirsuta HOM05D007526 ORTHO05D009350 2.9e-14 82.8 195 34.4
PGSC0003DMG400017266 Solanum tuberosum HOM05D007526 ORTHO05D009350 2.9e-14 82.8 233 32.2
BcaB02g08612 Brassica carinata HOM05D007526 ORTHO05D009350 8.5e-14 81.3 201 35.3
Oeu055231.1 Olea europaea HOM05D007526 ORTHO05D009350 8.5e-14 81.3 182 39.0
A07p09230 Brassica napus HOM05D007526 ORTHO05D009350 1.1e-13 80.9 192 33.3
EL10Ac3g05005 Beta vulgaris HOM05D007526 ORTHO05D009350 1.4e-13 80.5 202 36.6
C07p14270 Brassica napus HOM05D007526 ORTHO05D009350 1.4e-13 80.5 187 33.7
AT4G14380 Arabidopsis thaliana HOM05D007526 ORTHO05D009350 1.9e-13 80.1 197 33.5
Carub.0007s2786 Capsella rubella HOM05D007526 ORTHO05D009350 5.5e-13 78.6 215 33.5
Thhalv10022185m.g Eutrema salsugineum HOM05D007526 ORTHO05D009350 5.5e-13 78.6 199 35.2
Gohir.D09G230800 Gossypium hirsutum HOM05D007526 ORTHO05D009350 9.4e-13 77.8 183 37.7
Nn1g02762 Nelumbo nucifera HOM05D007526 ORTHO05D009350 9.4e-13 77.8 223 34.5
Rhsim04G0182300 Rhododendron simsii HOM05D007526 ORTHO05D009350 1.2e-12 77.4 182 40.7
COL.COLO4_15878 Corchorus olitorius HOM05D007526 ORTHO05D009350 1.4e-11 73.9 81 50.6
Nn3g19655 Nelumbo nucifera HOM05D007526 ORTHO05D009350 1.4e-11 73.9 227 31.3
QL09p038772 Quercus lobata HOM05D008367 ORTHO05D010529 1.4e-11 73.9 195 33.8
Ah.04g155760 Amaranthus hybridus HOM05D007526 ORTHO05D009350 1.8e-11 73.6 197 34.5
Aa31LG9G2940 Aethionema arabicum HOM05D007526 ORTHO05D009350 3.9e-11 72.4 169 31.4
BraA07t28719Z Brassica rapa HOM05D007526 ORTHO05D009350 8.8e-11 71.2 181 33.1
AL3G37924 Arabidopsis lyrata HOM05D007526 ORTHO05D009350 1.5e-10 70.5 54 64.8
Cc01_g18350 Coffea canephora HOM05D008367 ORTHO05D010529 2.2e-09 66.6 198 31.3
Haze_24631 Corylus avellana HOM05D008367 ORTHO05D010529 2.8e-09 66.2 181 34.8
Hma1.2p1_0267F.1_g107260 Hydrangea macrophylla HOM05D007526 ORTHO05D009350 2.8e-09 66.2 74 54.1
Potri.005G224200 Populus trichocarpa HOM05D008367 ORTHO05D010529 4.8e-09 65.5 181 32.6
Dinv27054 Davidia involucrata HOM05D007526 ORTHO05D009350 6.3e-09 65.1 86 52.3
Ca_09865_v3 Cicer arietinum L. HOM05D007526 ORTHO05D009350 8.2e-09 64.7 148 36.5
Hma1.2p1_0576F.1_g182070 Hydrangea macrophylla HOM05D008367 ORTHO05D010529 1.8e-08 63.5 188 34.6
Ciclev10022407m.g Citrus clementina HOM05D008367 ORTHO05D010529 5.3e-08 62.0 190 29.5
Potri.002G038400 Populus trichocarpa HOM05D008367 ORTHO05D010529 5.3e-08 62.0 184 32.6
Cfa002424 Carpinus fangiana HOM05D008367 ORTHO05D010529 7.0e-08 61.6 178 33.1
Hma1.2p1_0273F.1_g109700 Hydrangea macrophylla HOM05D008367 ORTHO05D010529 1.6e-07 60.5 186 30.6
Cpa.g.sc165.10 Carica papaya HOM05D008367 ORTHO05D010529 2.6e-07 59.7 172 32.6
CiPaw.03G264200 Carya illinoinensis HOM05D008367 ORTHO05D010529 3.5e-07 59.3 188 34.6
AUR62015571 Chenopodium quinoa HOM05D007526 ORTHO05D009350 3.5e-07 59.3 189 31.7
Atru.chr5.1688 Acer truncatum HOM05D008367 ORTHO05D010529 7.7e-07 58.2 175 30.3
Actinidia27694 Actinidia chinensis HOM05D008367 ORTHO05D010529 1.7e-06 57.0 172 30.2
RcHm_v2.0_Chr6g0288121 Rosa chinensis HOM05D008367 ORTHO05D010529 2.2e-06 56.6 183 31.7
Actinidia01843 Actinidia chinensis HOM05D007526 ORTHO05D009350 2.9e-06 56.2 44 72.7
Actinidia09550 Actinidia chinensis HOM05D008367 ORTHO05D010529 5.0e-06 55.5 181 29.3
Actinidia25788 Actinidia chinensis HOM05D008367 ORTHO05D010529 5.0e-06 55.5 173 32.4
FAN27G3501 Fragaria x ananassa HOM05D004208 ORTHO05D005156 8.5e-06 54.7 183 30.1
Medtr7g096950 Medicago truncatula HOM05D008367 ORTHO05D010529 8.5e-06 54.7 186 31.2


User provided reference genes

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