Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p016655 Quercus lobata HOM05D003940 ORTHO05D004461 2.5e-50 201.8 103 100.0
Cfa008351 Carpinus fangiana HOM05D003940 ORTHO05D004461 1.0e-27 126.7 106 69.8
Haze_11334 Corylus avellana HOM05D003940 ORTHO05D004461 5.1e-27 124.4 106 67.0
CiPaw.01G188000 Carya illinoinensis HOM05D003940 ORTHO05D004461 8.6e-27 123.6 110 66.4
CiPaw.02G114800 Carya illinoinensis HOM05D003940 ORTHO05D004461 5.4e-21 104.4 108 62.0
TWI73G0411 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.7e-19 99.4 104 62.5
TAR362G0514 Trochodendron aralioides HOM05D003940 ORTHO05D004461 3.0e-19 98.6 107 55.1
TWI09G0780 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 6.6e-19 97.4 103 55.3
PGR031G1035 Punica granatum HOM05D003940 ORTHO05D004461 1.9e-18 95.9 91 63.7
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 3.3e-18 95.1 106 59.4
Cpa.g.sc44.90 Carica papaya HOM05D003940 ORTHO05D004461 9.6e-18 93.6 107 55.1
Ciclev10006290m.g Citrus clementina HOM05D003940 ORTHO05D004461 1.3e-17 93.2 106 61.3
GSVIVG01027728001 Vitis vinifera HOM05D000515 ORTHO05D003188 1.3e-17 93.2 98 60.2
Duzib151G0370 Durio zibethinus HOM05D003940 ORTHO05D004461 1.6e-17 92.8 96 62.5
COL.COLO4_15828 Corchorus olitorius HOM05D003940 ORTHO05D004461 2.1e-17 92.4 111 56.8
Lj5g0009696 Lotus japonicus HOM05D003940 ORTHO05D004461 2.1e-17 92.4 107 58.9
Sabra10G0034600 Salix brachista HOM05D003940 ORTHO05D004461 4.8e-17 91.3 95 56.8
Hma1.2p1_0986F.1_g244370 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 6.2e-17 90.9 102 57.8
Psat6g132880 Pisum sativum HOM05D003940 ORTHO05D004461 6.2e-17 90.9 105 58.1
Glyma.10G188200 Glycine max HOM05D003940 ORTHO05D004461 8.1e-17 90.5 97 57.7
Lalb_Chr19g0128361 Lupinus albus HOM05D003940 ORTHO05D004461 8.1e-17 90.5 100 59.0
CANSAT78G1835 Cannabis sativa HOM05D003940 ORTHO05D004461 1.4e-16 89.7 117 53.8
Phvul.007G129450 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 1.4e-16 89.7 97 58.8
Psat6g138240 Pisum sativum HOM05D003940 ORTHO05D004461 1.4e-16 89.7 98 54.1
Thecc.04G250000 Theobroma cacao HOM05D003940 ORTHO05D004461 1.4e-16 89.7 98 59.2
Manes.15G038200 Manihot esculenta HOM05D003940 ORTHO05D004461 1.8e-16 89.4 109 55.0
Potri.008G164801 Populus trichocarpa HOM05D003940 ORTHO05D004461 1.8e-16 89.4 105 52.4
TAR365G0320 Trochodendron aralioides HOM05D003940 ORTHO05D004461 1.8e-16 89.4 113 53.1
Glyma.20G202600 Glycine max HOM05D003940 ORTHO05D004461 2.4e-16 89.0 99 57.6
Sed0016632 Sechium edule HOM05D003940 ORTHO05D004461 3.1e-16 88.6 108 58.3
Duzib212G0271 Durio zibethinus HOM05D003940 ORTHO05D004461 5.3e-16 87.8 98 58.2
Potri.010G073900 Populus trichocarpa HOM05D003940 ORTHO05D004461 5.3e-16 87.8 97 56.7
Cc03_g05120 Coffea canephora HOM05D003940 ORTHO05D004461 9.0e-16 87.0 109 53.2
MSTRG.9915 Avicennia marina HOM05D003940 ORTHO05D004461 1.5e-15 86.3 104 54.8
TPR.G15869 Trifolium pratense HOM05D003940 ORTHO05D004461 1.5e-15 86.3 97 52.6
TAR636G1753 Trochodendron aralioides HOM05D003940 ORTHO05D004461 1.5e-15 86.3 100 55.0
Gohir.D10G154400 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.0e-15 85.9 98 59.2
Gorai.011G172300 Gossypium raimondii HOM05D003940 ORTHO05D004461 2.0e-15 85.9 98 59.2
Lalb_Chr21g0312371 Lupinus albus HOM05D003940 ORTHO05D004461 2.0e-15 85.9 90 62.2
Solyc06g053700.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 2.6e-15 85.5 104 51.0
Sopen06g018810 Solanum pennellii HOM05D003940 ORTHO05D004461 2.6e-15 85.5 104 51.0
PGSC0003DMG400016324 Solanum tuberosum HOM05D003940 ORTHO05D004461 2.6e-15 85.5 104 51.9
FvH4_4g03100 Fragaria vesca HOM05D003940 ORTHO05D004461 3.4e-15 85.1 124 54.0
FAN22G2069 Fragaria x ananassa HOM05D003940 ORTHO05D004461 3.4e-15 85.1 124 54.8
Ca_09815_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 4.4e-15 84.7 107 53.3
Gorai.006G248700 Gossypium raimondii HOM05D003940 ORTHO05D004461 4.4e-15 84.7 100 56.0
Gohir.A09G225100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 5.8e-15 84.3 100 57.0
Gohir.D09G226800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 7.6e-15 84.0 104 54.8
Gohir.D02G043800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 3.8e-14 81.6 111 50.5
Thhalv10021654m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 4.9e-14 81.3 96 53.1
FAN12G3937 Fragaria x ananassa HOM05D003940 ORTHO05D004461 4.9e-14 81.3 120 54.2
FAN17G2041 Fragaria x ananassa HOM05D003940 ORTHO05D004461 4.9e-14 81.3 120 51.7
CSS0034657 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 6.4e-14 80.9 102 55.9
ClCG05G004480 Citrullus lanatus HOM05D003940 ORTHO05D004461 6.4e-14 80.9 87 48.3
Thhalv10027546m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 6.4e-14 80.9 97 50.5
HanXRQChr03g0092241 Helianthus annuus HOM05D003940 ORTHO05D004461 6.4e-14 80.9 84 59.5
RcHm_v2.0_Chr4g0391391 Rosa chinensis HOM05D003940 ORTHO05D004461 6.4e-14 80.9 124 54.8
THA.LOC104822248 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 6.4e-14 80.9 100 51.0
AUR62002262 Chenopodium quinoa HOM05D003940 ORTHO05D004461 8.4e-14 80.5 102 51.0
Gorai.005G048200 Gossypium raimondii HOM05D003940 ORTHO05D004461 8.4e-14 80.5 111 49.5
PGSC0003DMG400017255 Solanum tuberosum HOM05D003940 ORTHO05D004461 8.4e-14 80.5 102 49.0
CsaV3_3G012380 Cucumis sativus L. HOM05D000244 ORTHO05D000179 1.1e-13 80.1 103 43.7
Gohir.A02G037100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.1e-13 80.1 111 49.5
Lj6g0004880 Lotus japonicus HOM05D003940 ORTHO05D004461 1.1e-13 80.1 100 52.0
Rhsim04G0188200 Rhododendron simsii HOM05D003940 ORTHO05D004461 1.1e-13 80.1 97 56.7
THA.LOC104808609 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 1.1e-13 80.1 103 49.5
Ca_05393_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 1.4e-13 79.7 97 51.5
Eucgr.H03139 Eucalyptus grandis HOM05D003940 ORTHO05D004461 1.9e-13 79.3 117 44.4
Nn3g19606 Nelumbo nucifera HOM05D003940 ORTHO05D004461 1.9e-13 79.3 123 44.7
AUR62015478 Chenopodium quinoa HOM05D000816 ORTHO05D005265 2.4e-13 79.0 105 49.5
TWI53G1738 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 2.4e-13 79.0 103 51.5
Nitab4.5_0000342g0180 Nicotiana tabacum HOM05D003940 ORTHO05D004461 3.2e-13 78.6 101 50.5
Peaxi162Scf00024g01711 Petunia axillaris HOM05D003940 ORTHO05D004461 3.2e-13 78.6 106 50.0
Sopen09g032590 Solanum pennellii HOM05D003940 ORTHO05D004461 3.2e-13 78.6 104 48.1
TWI53G1893 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 3.2e-13 78.6 103 51.5
Sc19g0003500 Simmondsia chinensis HOM05D003940 ORTHO05D004461 4.2e-13 78.2 98 57.1
Solyc09g089650.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 4.2e-13 78.2 104 48.1
SGA_v2.0_scaffold101G29832 Striga asiatica HOM05D003940 ORTHO05D004461 5.4e-13 77.8 90 58.9
Aa31LG8G9650 Aethionema arabicum HOM05D003940 ORTHO05D004461 7.1e-13 77.4 108 46.3
AT3G23170 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 9.3e-13 77.0 92 53.3
Gohir.A10G112500 Gossypium hirsutum HOM05D003940 ORTHO05D004461 9.3e-13 77.0 98 56.1
PGR004G1022 Punica granatum HOM05D003940 ORTHO05D004461 9.3e-13 77.0 109 49.5
SalBow2G1766 Salvia bowleyana HOM05D003940 ORTHO05D004461 9.3e-13 77.0 111 53.2
BcaB06g26449 Brassica carinata HOM05D003940 ORTHO05D004461 1.2e-12 76.6 97 51.5
TAR602G0001 Trochodendron aralioides HOM05D003940 ORTHO05D004461 1.2e-12 76.6 88 54.5
Actinidia04462 Actinidia chinensis HOM05D003940 ORTHO05D004461 1.6e-12 76.3 88 53.4
Prupe.1G034700 Prunus persica HOM05D003940 ORTHO05D004461 1.6e-12 76.3 113 49.6
Dinv44656 Davidia involucrata HOM05D003940 ORTHO05D004461 2.1e-12 75.9 109 50.5
Nn1g00062 Nelumbo nucifera HOM05D003940 ORTHO05D004461 2.1e-12 75.9 129 41.9
Nn1g02702 Nelumbo nucifera HOM05D003940 ORTHO05D004461 2.1e-12 75.9 129 41.9
Peaxi162Scf00325g00012 Petunia axillaris HOM05D003940 ORTHO05D004461 2.1e-12 75.9 112 49.1
Peaxi162Scf00325g00015 Petunia axillaris HOM05D003940 ORTHO05D004461 2.1e-12 75.9 112 49.1
ClCG06G006840 Citrullus lanatus HOM05D003940 ORTHO05D004461 2.7e-12 75.5 98 55.1
Nitab4.5_0007234g0020 Nicotiana tabacum HOM05D003940 ORTHO05D004461 3.5e-12 75.1 101 47.5
Sc25g0004050 Simmondsia chinensis HOM05D003940 ORTHO05D004461 3.5e-12 75.1 90 52.2
vmacro08448 Vaccinium macrocarpon HOM05D003940 ORTHO05D004461 3.5e-12 75.1 109 48.6
MELO3C022975.2 Cucumis melo HOM05D003940 ORTHO05D004461 4.6e-12 74.7 131 47.3
Glyma.10G008021 Glycine max HOM05D003940 ORTHO05D004461 4.6e-12 74.7 103 50.5
AL3G37790 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 6.0e-12 74.3 91 51.6
BolC7t41935H Brassica oleracea HOM05D003940 ORTHO05D004461 6.0e-12 74.3 97 50.5
Lsat_1_v5_gn_5_72560 Lactuca sativa HOM05D003940 ORTHO05D004461 6.0e-12 74.3 95 50.5
AT1G04330 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 7.8e-12 73.9 101 51.5
Hma1.2p1_0310F.1_g120730 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 7.8e-12 73.9 112 49.1
BraA07t28731Z Brassica rapa HOM05D003940 ORTHO05D004461 1.0e-11 73.6 98 50.0
CSS0017531 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 1.0e-11 73.6 96 52.1
CARHR003650 Cardamine hirsuta HOM05D003940 ORTHO05D004461 1.0e-11 73.6 101 51.5
Migut.N00250 Erythranthe guttata HOM05D003940 ORTHO05D004461 1.0e-11 73.6 90 53.3
AL1G13930 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 1.3e-11 73.2 101 50.5
C07p14380 Brassica napus HOM05D003940 ORTHO05D004461 1.3e-11 73.2 97 50.5
MD13G1210200 Malus domestica HOM05D003940 ORTHO05D004461 1.3e-11 73.2 114 47.4
Carub.0001s0351 Capsella rubella HOM05D003940 ORTHO05D004461 1.7e-11 72.8 101 50.5
Medtr1g073910 Medicago truncatula HOM05D003940 ORTHO05D004461 1.7e-11 72.8 97 54.6
THA.LOC104822808 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 1.7e-11 72.8 98 52.0
Migut.G00451 Erythranthe guttata HOM05D003940 ORTHO05D004461 2.3e-11 72.4 95 52.6
Migut.G00452 Erythranthe guttata HOM05D003940 ORTHO05D004461 2.3e-11 72.4 95 51.6
Gorai.006G070500 Gossypium raimondii HOM05D003940 ORTHO05D004461 2.3e-11 72.4 91 51.6
MBI18_g43342_MAGBIO Magnolia biondii HOM05D003940 ORTHO05D004461 2.3e-11 72.4 104 51.0
VMungo0720G0726 Vigna mungo HOM05D003940 ORTHO05D004461 2.3e-11 72.4 103 49.5
A07p09330 Brassica napus HOM05D003940 ORTHO05D004461 3.0e-11 72.0 98 49.0
ECA233G6082 Erigeron canadensis HOM05D003940 ORTHO05D004461 3.0e-11 72.0 97 50.5
Thhalv10009178m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 3.9e-11 71.6 102 49.0
Sed0000021 Sechium edule HOM05D003940 ORTHO05D004461 3.9e-11 71.6 112 43.8
BcaC05g24452 Brassica carinata HOM05D003940 ORTHO05D004461 6.6e-11 70.9 102 48.0
HanXRQChr13g0425481 Helianthus annuus HOM05D003940 ORTHO05D004461 6.6e-11 70.9 91 50.5
Atru.chr4.2138 Acer truncatum HOM05D003940 ORTHO05D004461 8.7e-11 70.5 115 47.8
EL10Ac3g05913 Beta vulgaris HOM05D003940 ORTHO05D004461 8.7e-11 70.5 98 49.0
A10p02740 Brassica napus HOM05D003940 ORTHO05D004461 8.7e-11 70.5 101 47.5
BraA10t42542Z Brassica rapa HOM05D003940 ORTHO05D004461 8.7e-11 70.5 101 47.5
Carub.0003s2339 Capsella rubella HOM05D003940 ORTHO05D004461 8.7e-11 70.5 95 46.3
DCAR_027292 Daucus carota HOM05D003940 ORTHO05D004461 8.7e-11 70.5 103 48.5
DCAR_027293 Daucus carota HOM05D003940 ORTHO05D004461 8.7e-11 70.5 103 48.5
PSO210G0601 Papaver somniferum HOM05D003940 ORTHO05D004461 8.7e-11 70.5 109 49.5
Sp1g03140 Schrenkiella parvula HOM05D003940 ORTHO05D004461 8.7e-11 70.5 101 49.5
CARHR099110 Cardamine hirsuta HOM05D003940 ORTHO05D004461 1.1e-10 70.1 97 48.5
Gohir.D09G056900 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.1e-10 70.1 104 48.1
C05p02510 Brassica napus HOM05D003940 ORTHO05D004461 1.5e-10 69.7 101 47.5
CAN.G793.6 Capsicum annuum HOM05D003940 ORTHO05D004461 1.5e-10 69.7 110 43.6
BolC5t29030H Brassica oleracea HOM05D003940 ORTHO05D004461 1.9e-10 69.3 101 47.5
Manes.03G167050 Manihot esculenta HOM05D003940 ORTHO05D004461 1.9e-10 69.3 97 49.5
SalBow3G4424 Salvia bowleyana HOM05D003940 ORTHO05D004461 1.9e-10 69.3 86 52.3
Oeu063884.1 Olea europaea HOM05D003940 ORTHO05D004461 2.5e-10 68.9 99 47.5
Aqoxy5G00265 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 3.3e-10 68.6 113 45.1
BcaB02g08606 Brassica carinata HOM05D003940 ORTHO05D004461 4.3e-10 68.2 88 50.0
A03p43180 Brassica napus HOM05D003940 ORTHO05D004461 4.3e-10 68.2 95 47.4
CAN.G738.11 Capsicum annuum HOM05D003940 ORTHO05D004461 4.3e-10 68.2 99 46.5
Oeu025569.1 Olea europaea HOM05D003940 ORTHO05D004461 4.3e-10 68.2 100 47.0
MD16G1213100 Malus domestica HOM05D003940 ORTHO05D004461 5.6e-10 67.8 110 44.5
Medtr1g044125 Medicago truncatula HOM05D003940 ORTHO05D004461 5.6e-10 67.8 104 45.2
Phvul.007G272100 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 5.6e-10 67.8 103 47.6
Sp7g12530 Schrenkiella parvula HOM05D003940 ORTHO05D004461 5.6e-10 67.8 104 46.2
unitig_32.g11714 Utricularia gibba HOM05D003940 ORTHO05D004461 7.3e-10 67.4 98 46.9
A04p07580 Brassica napus HOM05D003940 ORTHO05D004461 9.6e-10 67.0 88 48.9
CARHR220660 Cardamine hirsuta HOM05D003940 ORTHO05D004461 9.6e-10 67.0 90 50.0
Sp3g20820 Schrenkiella parvula HOM05D003940 ORTHO05D004461 9.6e-10 67.0 101 44.6
BraA04t16449Z Brassica rapa HOM05D003940 ORTHO05D004461 1.3e-09 66.6 88 48.9
CsaV3_2G012950 Cucumis sativus L. HOM05D003940 ORTHO05D004461 2.1e-09 65.9 124 44.4
Lsat_1_v5_gn_3_122140 Lactuca sativa HOM05D003940 ORTHO05D004461 2.1e-09 65.9 89 49.4
BraA03t13459Z Brassica rapa HOM05D003940 ORTHO05D004461 2.8e-09 65.5 96 44.8
Gohir.A09G057700 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.8e-09 65.5 91 47.3
AT4G14450 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 4.8e-09 64.7 101 46.5
Aqoxy2G03616 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 8.1e-09 63.9 114 42.1
AL7G41690 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 8.1e-09 63.9 97 44.3
BcaC02g09310 Brassica carinata HOM05D003940 ORTHO05D004461 1.4e-08 63.2 88 47.7
C04p41270 Brassica napus HOM05D003940 ORTHO05D004461 1.4e-08 63.2 88 47.7
BolC4t25705H Brassica oleracea HOM05D003940 ORTHO05D004461 1.4e-08 63.2 88 47.7
SHI00703 Sapria himalayana HOM05D003940 ORTHO05D004461 3.1e-08 62.0 97 47.4
ATR0680G398 Amborella trichopoda HOM05D003940 ORTHO05D004461 6.9e-08 60.8 88 44.3
Sc13g0005150 Simmondsia chinensis HOM05D003940 ORTHO05D004461 1.5e-07 59.7 86 45.3
HPP92_025972 Vanilla planifolia HOM05D027912 ORTHO05D004461 1.5e-07 59.7 96 40.6
BcaC07g42173 Brassica carinata HOM05D003940 ORTHO05D004461 4.5e-07 58.2 87 46.0
BcaC07g42193 Brassica carinata HOM05D003940 ORTHO05D004461 4.5e-07 58.2 87 46.0
Carub.0007s2777 Capsella rubella HOM05D003940 ORTHO05D004461 4.5e-07 58.2 101 38.6
FAN26G1611 Fragaria x ananassa HOM05D003940 ORTHO05D004461 7.6e-07 57.4 85 48.2
Sed0008236 Sechium edule HOM05D003940 ORTHO05D004461 2.9e-06 55.5 92 43.5


User provided reference genes

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