Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p015868 Quercus lobata HOM05D003636 ORTHO05D005160 2.0e-132 475.7 233 100.0
QL02p053474 Quercus lobata HOM05D003636 ORTHO05D005160 1.2e-39 167.5 246 41.1
Haze_11308 Corylus avellana HOM05D003636 ORTHO05D005160 3.4e-39 166.0 248 40.3
Haze_11311 Corylus avellana HOM05D003636 ORTHO05D005160 5.0e-38 162.2 333 34.8
Cfa008372 Carpinus fangiana HOM05D003636 ORTHO05D005160 3.2e-37 159.5 333 34.5
MD13G1208100 Malus domestica HOM05D003636 ORTHO05D005160 3.0e-35 152.9 253 36.4
Atru.chr4.2209 Acer truncatum HOM05D003636 ORTHO05D005160 2.2e-33 146.7 247 36.0
Prupe.1G031700 Prunus persica HOM05D003636 ORTHO05D005160 3.7e-33 146.0 251 35.5
Sed0019602 Sechium edule HOM05D003636 ORTHO05D005160 4.8e-33 145.6 241 37.8
Gorai.010G076500 Gossypium raimondii HOM05D003636 ORTHO05D005160 1.4e-32 144.1 239 36.8
MD16G1209600 Malus domestica HOM05D003636 ORTHO05D005160 1.4e-32 144.1 319 31.3
Ca_11092_v3 Cicer arietinum L. HOM05D003636 ORTHO05D005160 1.8e-32 143.7 254 35.8
CSS0043760 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 3.1e-32 142.9 250 35.2
Ca_11090_v3 Cicer arietinum L. HOM05D003636 ORTHO05D005160 3.1e-32 142.9 298 32.9
HanXRQChr09g0258341 Helianthus annuus HOM05D003636 ORTHO05D005160 3.1e-32 142.9 228 36.0
CSS0010332 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 4.1e-32 142.5 250 35.2
CSS0030608 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 4.1e-32 142.5 250 35.2
HanXRQChr06g0181471 Helianthus annuus HOM05D003636 ORTHO05D005160 4.1e-32 142.5 226 36.3
Ciclev10004498m.g Citrus clementina HOM05D003636 ORTHO05D005160 5.3e-32 142.1 247 35.2
Gohir.D06G065300 Gossypium hirsutum HOM05D003636 ORTHO05D005160 5.3e-32 142.1 239 36.4
Actinidia19047 Actinidia chinensis HOM05D003636 ORTHO05D005160 6.9e-32 141.7 250 35.6
Ciclev10004361m.g Citrus clementina HOM05D003636 ORTHO05D005160 6.9e-32 141.7 247 34.8
ClCG09G021970 Citrullus lanatus HOM05D003636 ORTHO05D005160 9.1e-32 141.4 292 32.5
Lj2g0003499 Lotus japonicus HOM05D003636 ORTHO05D005160 9.1e-32 141.4 295 32.5
ECA233G4087 Erigeron canadensis HOM05D003636 ORTHO05D005160 1.2e-31 141.0 317 31.2
Glyma.10G264200 Glycine max HOM05D003636 ORTHO05D005160 1.2e-31 141.0 320 31.6
Sabra16G0282600 Salix brachista HOM05D003636 ORTHO05D005160 1.2e-31 141.0 269 33.8
Lj5g0001808 Lotus japonicus HOM05D003636 ORTHO05D005160 1.5e-31 140.6 295 32.5
CSS0023771 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 2.0e-31 140.2 250 34.8
Glyma.20G126100 Glycine max HOM05D003636 ORTHO05D005160 2.0e-31 140.2 320 30.6
GSVIVG01018130001 Vitis vinifera HOM05D003636 ORTHO05D005160 2.0e-31 140.2 251 35.9
Lalb_Chr21g0308481 Lupinus albus HOM05D003636 ORTHO05D005160 2.6e-31 139.8 251 35.1
Gohir.A06G066800 Gossypium hirsutum HOM05D003636 ORTHO05D005160 3.4e-31 139.4 239 36.0
Aa31LG2G11570 Aethionema arabicum HOM05D003636 ORTHO05D005160 4.5e-31 139.0 252 33.7
VMungo0720G2747 Vigna mungo HOM05D003636 ORTHO05D005160 4.5e-31 139.0 308 30.5
Eucgr.G02714 Eucalyptus grandis HOM05D003636 ORTHO05D005160 5.9e-31 138.7 226 35.8
COL.COLO4_15803 Corchorus olitorius HOM05D003636 ORTHO05D005160 7.7e-31 138.3 247 34.0
Haze_21469 Corylus avellana HOM05D003636 ORTHO05D005160 7.7e-31 138.3 395 30.1
Oeu002605.1 Olea europaea HOM05D003636 ORTHO05D005160 7.7e-31 138.3 240 34.6
CSS0034908 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 1.0e-30 137.9 250 34.4
MBI11_g20311_MAGBIO Magnolia biondii HOM05D003636 ORTHO05D005160 1.3e-30 137.5 226 36.3
Hma1.2p1_1798F.1_g302870 Hydrangea macrophylla HOM05D003636 ORTHO05D005160 2.2e-30 136.7 226 35.0
Phvul.007G037800 Phaseolus vulgaris HOM05D003636 ORTHO05D005160 2.2e-30 136.7 229 35.4
PGR142G0130 Punica granatum HOM05D003636 ORTHO05D005160 2.2e-30 136.7 226 36.3
MSTRG.4105 Avicennia marina HOM05D003636 ORTHO05D005160 2.9e-30 136.3 366 29.8
MELO3C015028.2 Cucumis melo HOM05D003636 ORTHO05D005160 2.9e-30 136.3 245 33.9
TWI73G0437 Tripterygium wilfordii HOM05D003636 ORTHO05D005160 2.9e-30 136.3 307 32.6
SalBow2G0018 Salvia bowleyana HOM05D003636 ORTHO05D005160 3.8e-30 136.0 251 33.5
Medtr1g107575 Medicago truncatula HOM05D003636 ORTHO05D005160 5.0e-30 135.6 332 30.4
Dinv44639 Davidia involucrata HOM05D003636 ORTHO05D005160 6.5e-30 135.2 248 33.9
RcHm_v2.0_Chr4g0390791 Rosa chinensis HOM05D003636 ORTHO05D005160 6.5e-30 135.2 251 34.3
Dinv44638 Davidia involucrata HOM05D003636 ORTHO05D005160 8.5e-30 134.8 340 30.6
TPR.G13854 Trifolium pratense HOM05D003636 ORTHO05D005160 8.5e-30 134.8 298 31.5
TPR.G3263 Trifolium pratense HOM05D003636 ORTHO05D005160 8.5e-30 134.8 254 33.9
BcaB07g31117 Brassica carinata HOM05D003636 ORTHO05D005160 1.1e-29 134.4 226 35.8
CsaV3_5G014730 Cucumis sativus L. HOM05D003636 ORTHO05D005160 1.1e-29 134.4 245 33.9
Potri.001G415900 Populus trichocarpa HOM05D003636 ORTHO05D005160 1.1e-29 134.4 226 35.8
Hma1.2p1_1276F.1_g272050 Hydrangea macrophylla HOM05D003636 ORTHO05D005160 1.4e-29 134.0 226 35.0
AL1G65900 Arabidopsis lyrata HOM05D003636 ORTHO05D005160 1.9e-29 133.7 226 35.4
BcaC04g22040 Brassica carinata HOM05D003636 ORTHO05D005160 1.9e-29 133.7 226 35.4
C09p24190 Brassica napus HOM05D003636 ORTHO05D005160 1.9e-29 133.7 226 35.4
TAR362G1191 Trochodendron aralioides HOM05D003636 ORTHO05D005160 1.9e-29 133.7 269 32.3
A09p19180 Brassica napus HOM05D003636 ORTHO05D005160 2.5e-29 133.3 227 35.2
Lsat_1_v5_gn_5_72980 Lactuca sativa HOM05D003636 ORTHO05D005160 3.2e-29 132.9 227 36.1
Carub.0002s0788 Capsella rubella HOM05D003636 ORTHO05D005160 4.2e-29 132.5 226 35.0
Nitab4.5_0001418g0070 Nicotiana tabacum HOM05D003636 ORTHO05D005160 4.2e-29 132.5 248 33.1
Cpa.g.sc58.55 Carica papaya HOM05D003636 ORTHO05D005160 5.5e-29 132.1 250 34.0
Nitab4.5_0000525g0280 Nicotiana tabacum HOM05D003636 ORTHO05D005160 5.5e-29 132.1 248 33.1
CDE06G0563 Ceratophyllum demersum HOM05D003636 ORTHO05D005160 7.2e-29 131.7 226 35.0
FvH4_4g02820 Fragaria vesca HOM05D003636 ORTHO05D005160 7.2e-29 131.7 249 33.3
Lj2A972G23 Lonicera japonica HOM05D003636 ORTHO05D005160 7.2e-29 131.7 251 33.5
RcHm_v2.0_Chr5g0000461 Rosa chinensis HOM05D003636 ORTHO05D005160 7.2e-29 131.7 251 33.9
arahy.Tifrunner.gnm1.ann1.7RJ7GD Arachis hypogaea HOM05D003636 ORTHO05D005160 9.4e-29 131.3 337 29.1
Cc01_g03130 Coffea canephora HOM05D003636 ORTHO05D005160 9.4e-29 131.3 226 34.1
CAN.G1007.10 Capsicum annuum HOM05D003636 ORTHO05D005160 1.2e-28 131.0 251 32.7
FAN17G1850 Fragaria x ananassa HOM05D003636 ORTHO05D005160 1.2e-28 131.0 322 29.5
CARHR289840 Cardamine hirsuta HOM05D003636 ORTHO05D005160 1.6e-28 130.6 226 35.0
arahy.Tifrunner.gnm1.ann1.T9EQBK Arachis hypogaea HOM05D003636 ORTHO05D005160 2.7e-28 129.8 337 28.8
Manes.02G210300 Manihot esculenta HOM05D003636 ORTHO05D005160 2.7e-28 129.8 226 34.5
DCAR_024229 Daucus carota HOM05D003636 ORTHO05D005160 3.6e-28 129.4 263 30.8
AUR62039385 Chenopodium quinoa HOM05D003636 ORTHO05D005160 4.7e-28 129.0 335 29.0
Rhsim07G0057600 Rhododendron simsii HOM05D003636 ORTHO05D005160 6.1e-28 128.6 250 32.4
AUR62014577 Chenopodium quinoa HOM05D003636 ORTHO05D005160 1.0e-27 127.9 335 29.3
Thhalv10023321m.g Eutrema salsugineum HOM05D003636 ORTHO05D005160 1.0e-27 127.9 343 29.2
Hund02552 Selenicereus undatus HOM05D003636 ORTHO05D005160 1.0e-27 127.9 226 32.7
Aqoxy2G03579 Aquilegia oxysepala HOM05D003636 ORTHO05D005160 1.4e-27 127.5 249 32.5
Cc03_g04930 Coffea canephora HOM05D003636 ORTHO05D005160 1.4e-27 127.5 226 33.2
Hund11200 Selenicereus undatus HOM05D003636 ORTHO05D005160 1.4e-27 127.5 226 32.3
SGA_v2.0_scaffold101G29798 Striga asiatica HOM05D003636 ORTHO05D005160 1.4e-27 127.5 241 32.8
Zm00001eb056720 Zea mays HOM05D003636 ORTHO05D005160 1.4e-27 127.5 233 32.2
ATR0665G579 Amborella trichopoda HOM05D003636 ORTHO05D005160 1.8e-27 127.1 324 28.1
Migut.G00443 Erythranthe guttata HOM05D003636 ORTHO05D005160 1.8e-27 127.1 226 35.0
Sopen09g032360 Solanum pennellii HOM05D003636 ORTHO05D005160 1.8e-27 127.1 244 32.0
Rhsim02G0033400 Rhododendron simsii HOM05D003636 ORTHO05D005160 3.0e-27 126.3 250 32.4
AT1G56290 Arabidopsis thaliana HOM05D003636 ORTHO05D005160 5.1e-27 125.6 334 27.8
CANSAT11G0466 Cannabis sativa HOM05D003636 ORTHO05D005160 5.1e-27 125.6 252 31.0
Os03g0740700 Oryza sativa ssp. japonica HOM05D003636 ORTHO05D005160 5.1e-27 125.6 314 29.0
PSO170G0718 Papaver somniferum HOM05D003636 ORTHO05D005160 5.1e-27 125.6 227 35.2
Solyc09g083420.3 Solanum lycopersicum HOM05D003636 ORTHO05D005160 5.1e-27 125.6 244 31.6
Hund05016 Selenicereus undatus HOM05D003636 ORTHO05D005160 6.7e-27 125.2 340 28.2
EL10Ac2g04633 Beta vulgaris HOM05D003636 ORTHO05D005160 1.1e-26 124.4 335 29.3
PGSC0003DMG400015117 Solanum tuberosum HOM05D003636 ORTHO05D005160 1.5e-26 124.0 244 31.1
Sc13g0005100 Simmondsia chinensis HOM05D003636 ORTHO05D005160 2.0e-26 123.6 333 29.4
PSO017G1763 Papaver somniferum HOM05D003636 ORTHO05D005160 3.3e-26 122.9 253 33.2
Manes.02G214300 Manihot esculenta HOM05D003636 ORTHO05D005160 5.7e-26 122.1 226 31.9
Peaxi162Scf00813g00221 Petunia axillaris HOM05D003636 ORTHO05D005160 5.7e-26 122.1 276 30.1
HPP92_018388 Vanilla planifolia HOM05D003636 ORTHO05D005160 9.7e-26 121.3 225 32.4
Psat0s986g0040 Pisum sativum HOM05D003636 ORTHO05D005160 1.7e-25 120.6 227 30.0
Nitab4.5_0000026g0370 Nicotiana tabacum HOM05D003636 ORTHO05D005160 2.2e-25 120.2 247 32.8
unitig_736.g22446 Utricularia gibba HOM05D003636 ORTHO05D005160 3.7e-25 119.4 341 27.9
vmacro15411 Vaccinium macrocarpon HOM05D003636 ORTHO05D005160 1.4e-24 117.5 251 30.3
Ah.09g223830 Amaranthus hybridus HOM05D003636 ORTHO05D005160 2.4e-24 116.7 251 29.1
EL10Ac2g03737 Beta vulgaris HOM05D003636 ORTHO05D005160 2.4e-24 116.7 256 30.1
FAN12G1487 Fragaria x ananassa HOM05D003636 ORTHO05D005160 1.5e-23 114.0 81 63.0
Dinv00242 Davidia involucrata HOM05D003636 ORTHO05D005160 7.7e-23 111.7 338 29.3
CiPaw.02G116000 Carya illinoinensis HOM05D003636 ORTHO05D005160 1.3e-22 110.9 83 62.7
SEGI_36314 Sequoiadendron giganteum HOM05D003636 ORTHO05D005160 1.7e-22 110.5 226 31.4
Dinv02719 Davidia involucrata HOM05D003636 ORTHO05D005160 5.0e-22 109.0 338 28.7
Psat2g188400 Pisum sativum HOM05D003636 ORTHO05D005160 2.5e-21 106.7 105 47.6
Psat2g188680 Pisum sativum HOM05D003636 ORTHO05D005160 2.5e-21 106.7 105 47.6
Psat6g220520 Pisum sativum HOM05D003636 ORTHO05D005160 2.5e-21 106.7 105 47.6
THA.LOC104801942 Tarenaya hassleriana HOM05D003636 ORTHO05D005160 3.2e-21 106.3 104 48.1
CiPaw.02G115900 Carya illinoinensis HOM05D003636 ORTHO05D005160 4.2e-21 105.9 233 32.6
Rhsim10G0205300 Rhododendron simsii HOM05D003636 ORTHO05D005160 1.2e-20 104.4 71 62.0
Thecc.K0000100 Theobroma cacao HOM05D003636 ORTHO05D005160 1.2e-20 104.4 74 63.5
THA.LOC104823115 Tarenaya hassleriana HOM05D003636 ORTHO05D005160 1.6e-20 104.0 104 48.1
THA.LOC104823120 Tarenaya hassleriana HOM05D003636 ORTHO05D005160 1.6e-20 104.0 104 48.1
Rhsim03G0051600 Rhododendron simsii HOM05D003636 ORTHO05D005160 3.6e-20 102.8 72 62.5
Rhsim03G0051200 Rhododendron simsii HOM05D003636 ORTHO05D005160 4.7e-20 102.4 71 60.6
Hund02549 Selenicereus undatus HOM05D003636 ORTHO05D005160 4.7e-20 102.4 71 60.6
CBR_g41119 Chara braunii HOM05D003636 ORTHO05D005160 1.1e-18 97.8 244 27.5
EL10Ac2g04632 Beta vulgaris HOM05D003636 ORTHO05D005160 4.4e-18 95.9 105 46.7
Mapoly0080s0020 Marchantia polymorpha HOM05D003636 ORTHO05D005160 4.8e-17 92.4 233 26.2
SMO356G0642 Selaginella moellendorffii HOM05D003636 ORTHO05D005160 2.4e-16 90.1 230 26.1
Thecc.04G247000 Theobroma cacao HOM05D003636 ORTHO05D005160 3.8e-14 82.8 72 54.2
Duzib138G1962 Durio zibethinus HOM05D003636 ORTHO05D005160 5.0e-14 82.4 72 55.6
Psat2g188360 Pisum sativum HOM05D003636 ORTHO05D005160 5.5e-13 79.0 46 71.7
ATR0691G272 Amborella trichopoda HOM05D003636 ORTHO05D005160 1.6e-12 77.4 63 49.2
Thecc.05G005400 Theobroma cacao HOM05D003636 ORTHO05D005160 2.1e-12 77.0 77 48.1
ATR0681G292 Amborella trichopoda HOM05D003636 ORTHO05D005160 6.1e-12 75.5 61 57.4
Actinidia05462 Actinidia chinensis HOM05D003636 ORTHO05D005160 1.8e-11 73.9 88 48.9
Nn1g02632 Nelumbo nucifera HOM05D003636 ORTHO05D005160 1.8e-11 73.9 60 55.0
CARHR172220 Cardamine hirsuta HOM05D003636 ORTHO05D005160 2.3e-11 73.6 46 65.2
Cre17.g741550 Chlamydomonas reinhardtii HOM05D003636 ORTHO05D005160 3.0e-11 73.2 105 31.4
Rhsim04G0219300 Rhododendron simsii HOM05D003636 ORTHO05D005160 2.6e-10 70.1 55 52.7
Pp3c6_28790 Physcomitrium patens HOM05D003636 ORTHO05D005160 9.7e-10 68.2 226 23.5
SpUn1110_0010 Schrenkiella parvula HOM05D003636 ORTHO05D005160 4.8e-09 65.9 74 41.9
Lj2C973G0 Lonicera japonica HOM05D003636 ORTHO05D005160 5.9e-07 58.9 100 34.0
AagrBONN_evm.TU.Sc2ySwM_228.671 Anthoceros agrestis HOM05D003636 ORTHO05D005160 7.7e-07 58.5 83 33.7
MCO13G162 Micromonas commoda HOM05D003636 ORTHO05D005160 1.0e-06 58.2 78 33.3


User provided reference genes

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