Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p014718 Quercus lobata HOM05D004817 ORTHO05D005790 1.6e-35 152.1 72 100.0
Phvul.009G221600 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 2.6e-30 134.8 72 88.9
Phvul.003G124400 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 1.9e-28 128.6 72 84.7
CiPaw.01G127200 Carya illinoinensis HOM05D004817 ORTHO05D005790 2.5e-28 128.3 72 87.5
Psat1g016600 Pisum sativum HOM05D004817 ORTHO05D005790 3.2e-28 127.9 72 84.7
Manes.03G213500 Manihot esculenta HOM05D004817 ORTHO05D005790 4.2e-28 127.5 72 87.5
Glyma.13G117300 Glycine max HOM05D004817 ORTHO05D005790 2.7e-27 124.8 74 82.4
Glyma.09G077700 Glycine max HOM05D004817 ORTHO05D005790 3.5e-27 124.4 73 83.6
Cfa015752 Carpinus fangiana HOM05D004817 ORTHO05D005790 4.6e-27 124.0 73 82.2
TPR.G29237 Trifolium pratense HOM05D004817 ORTHO05D005790 7.9e-27 123.2 72 81.9
Ca_02320_v3 Cicer arietinum L. HOM05D004817 ORTHO05D005790 1.3e-26 122.5 73 82.2
Dinv24730 Davidia involucrata HOM05D004817 ORTHO05D005790 2.3e-26 121.7 72 84.7
Glyma.15G185200 Glycine max HOM05D004817 ORTHO05D005790 2.3e-26 121.7 74 83.8
Medtr2g044940 Medicago truncatula HOM05D004817 ORTHO05D005790 3.9e-26 120.9 73 80.8
Atru.chr4.3187 Acer truncatum HOM05D004817 ORTHO05D005790 5.1e-26 120.6 79 81.0
Sabra10G0003400 Salix brachista HOM05D004817 ORTHO05D005790 8.7e-26 119.8 74 77.0
Potri.010G004000 Populus trichocarpa HOM05D004817 ORTHO05D005790 1.5e-25 119.0 74 78.4
Prupe.1G208000 Prunus persica HOM05D004817 ORTHO05D005790 3.3e-25 117.9 73 78.1
COL.COLO4_25048 Corchorus olitorius HOM05D004817 ORTHO05D005790 5.7e-25 117.1 72 81.9
Eucgr.B02200 Eucalyptus grandis HOM05D004817 ORTHO05D005790 7.4e-25 116.7 72 79.2
Glyma.17G042600 Glycine max HOM05D004817 ORTHO05D005790 9.6e-25 116.3 73 79.5
Lalb_Chr23g0276121 Lupinus albus HOM05D004817 ORTHO05D005790 9.6e-25 116.3 71 78.9
Medtr4g124250 Medicago truncatula HOM05D004817 ORTHO05D005790 1.6e-24 115.5 75 77.3
TPR.G12580 Trifolium pratense HOM05D004817 ORTHO05D005790 1.6e-24 115.5 74 75.7
Ciclev10007149m.g Citrus clementina HOM05D004817 ORTHO05D005790 2.1e-24 115.2 75 77.3
MD13G1137200 Malus domestica HOM05D004817 ORTHO05D005790 2.1e-24 115.2 74 79.7
Lalb_Chr08g0232961 Lupinus albus HOM05D004817 ORTHO05D005790 3.7e-24 114.4 71 77.5
Gohir.D01G023700 Gossypium hirsutum HOM05D004817 ORTHO05D005790 6.2e-24 113.6 70 81.4
Gorai.002G032200 Gossypium raimondii HOM05D004817 ORTHO05D005790 6.2e-24 113.6 70 81.4
Lj2g0017510 Lotus japonicus HOM05D004817 ORTHO05D005790 6.2e-24 113.6 71 74.6
Duzib151G1168 Durio zibethinus HOM05D004817 ORTHO05D005790 1.1e-23 112.8 70 81.4
Gohir.A01G036400 Gossypium hirsutum HOM05D004817 ORTHO05D005790 1.1e-23 112.8 70 81.4
Lalb_Chr12g0200501 Lupinus albus HOM05D004817 ORTHO05D005790 2.4e-23 111.7 73 75.3
Lalb_Chr07g0181551 Lupinus albus HOM05D004817 ORTHO05D005790 5.3e-23 110.5 74 73.0
MD16G1133100 Malus domestica HOM05D004817 ORTHO05D005790 5.3e-23 110.5 74 74.3
RcHm_v2.0_Chr4g0427991 Rosa chinensis HOM05D004817 ORTHO05D005790 6.9e-23 110.2 74 77.0
Lj6g0012255 Lotus japonicus HOM05D004817 ORTHO05D005790 9.0e-23 109.8 75 77.3
Psat4g020640 Pisum sativum HOM05D004817 ORTHO05D005790 1.5e-22 109.0 66 77.3
arahy.Tifrunner.gnm1.ann1.E7NGHZ Arachis hypogaea HOM05D004817 ORTHO05D005790 2.0e-22 108.6 76 76.3
Lj4g0003186 Lotus japonicus HOM05D004817 ORTHO05D005790 2.6e-22 108.2 71 71.8
GSVIVG01017708001 Vitis vinifera HOM05D004817 ORTHO05D005790 2.6e-22 108.2 72 77.8
arahy.Tifrunner.gnm1.ann1.XTK2NM Arachis hypogaea HOM05D004817 ORTHO05D005790 4.5e-22 107.5 76 76.3
Lalb_Chr11g0073761 Lupinus albus HOM05D004817 ORTHO05D005790 4.5e-22 107.5 71 74.6
Thecc.04G314800 Theobroma cacao HOM05D004817 ORTHO05D005790 5.8e-22 107.1 79 73.4
Hund12264 Selenicereus undatus HOM05D004817 ORTHO05D005790 1.0e-21 106.3 73 75.3
Aqoxy2G02458 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 1.7e-21 105.5 74 67.6
PGR004G2302 Punica granatum HOM05D004817 ORTHO05D005790 2.2e-21 105.1 80 67.5
SalBow6G6449 Salvia bowleyana HOM05D004817 ORTHO05D005790 2.2e-21 105.1 72 69.4
PGR031G2777 Punica granatum HOM05D004817 ORTHO05D005790 2.9e-21 104.8 76 73.7
Eucgr.H04140 Eucalyptus grandis HOM05D004817 ORTHO05D005790 3.8e-21 104.4 71 74.6
FAN12G2725 Fragaria x ananassa HOM05D004817 ORTHO05D005790 5.0e-21 104.0 74 75.7
Nn4g25286 Nelumbo nucifera HOM05D004817 ORTHO05D005790 1.1e-20 102.8 71 73.2
FvH4_4g21760 Fragaria vesca HOM05D004817 ORTHO05D005790 1.9e-20 102.1 74 74.3
FAN07G2633 Fragaria x ananassa HOM05D004817 ORTHO05D005790 1.9e-20 102.1 74 74.3
FAN17G1578 Fragaria x ananassa HOM05D004817 ORTHO05D005790 1.9e-20 102.1 74 74.3
CANSAT25G3847 Cannabis sativa HOM05D004817 ORTHO05D005790 5.5e-20 100.5 81 69.1
Lalb_Chr13g0299061 Lupinus albus HOM05D004817 ORTHO05D005790 9.3e-20 99.8 69 72.5
TAR362G1300 Trochodendron aralioides HOM05D004817 ORTHO05D005790 2.1e-19 98.6 74 67.6
MBI18_g46513_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 2.7e-19 98.2 72 66.7
EL10Ac3g06222 Beta vulgaris HOM05D004817 ORTHO05D005790 3.5e-19 97.8 71 67.6
Cc03_g00010 Coffea canephora HOM05D004817 ORTHO05D005790 4.6e-19 97.4 68 72.1
Oeu002212.1 Olea europaea HOM05D004817 ORTHO05D005790 1.0e-18 96.3 66 74.2
Aqoxy5G02845 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 3.9e-18 94.4 70 65.7
Nitab4.5_0001769g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 3.9e-18 94.4 70 68.6
Oeu022716.1 Olea europaea HOM05D004817 ORTHO05D005790 5.1e-18 94.0 67 71.6
Sed0022538 Sechium edule HOM05D004817 ORTHO05D005790 1.1e-17 92.8 82 61.0
Migut.J01631 Erythranthe guttata HOM05D004817 ORTHO05D005790 1.9e-17 92.0 71 66.2
Haze_00750 Corylus avellana HOM05D004817 ORTHO05D005790 2.5e-17 91.7 56 78.6
Nitab4.5_0000745g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 3.3e-17 91.3 69 73.9
Sed0023994 Sechium edule HOM05D004817 ORTHO05D005790 5.7e-17 90.5 69 66.7
Cpa.g.sc146.7 Carica papaya HOM05D004817 ORTHO05D005790 7.4e-17 90.1 84 59.5
ClCG05G006950 Citrullus lanatus HOM05D004817 ORTHO05D005790 7.4e-17 90.1 82 58.5
arahy.Tifrunner.gnm1.ann1.WNQ9XL Arachis hypogaea HOM05D004817 ORTHO05D005790 9.7e-17 89.7 83 59.0
MBI18_g40079_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 1.6e-16 89.0 72 61.1
Solyc12g098880.2 Solanum lycopersicum HOM05D004817 ORTHO05D005790 2.2e-16 88.6 66 63.6
Sopen12g033630 Solanum pennellii HOM05D004817 ORTHO05D005790 2.2e-16 88.6 66 63.6
PGSC0003DMG400004597 Solanum tuberosum HOM05D004817 ORTHO05D005790 2.8e-16 88.2 66 65.2
unitig_746.g26894 Utricularia gibba HOM05D004817 ORTHO05D005790 3.7e-16 87.8 68 63.2
arahy.Tifrunner.gnm1.ann1.V5CRDX Arachis hypogaea HOM05D004817 ORTHO05D005790 1.1e-15 86.3 85 56.5
CDE02G4689 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 1.1e-15 86.3 65 61.5
CAN.G305.33 Capsicum annuum HOM05D004817 ORTHO05D005790 1.8e-15 85.5 71 67.6
CsaV3_3G015620 Cucumis sativus L. HOM05D004817 ORTHO05D005790 1.8e-15 85.5 83 54.2
PGSC0003DMG400027147 Solanum tuberosum HOM05D004817 ORTHO05D005790 1.8e-15 85.5 71 67.6
Solyc05g053180.3 Solanum lycopersicum HOM05D004817 ORTHO05D005790 2.4e-15 85.1 71 67.6
Sopen05g031690 Solanum pennellii HOM05D004817 ORTHO05D005790 2.4e-15 85.1 71 67.6
THA.LOC104821815 Tarenaya hassleriana HOM05D004817 ORTHO05D005790 5.3e-15 84.0 74 63.5
Peaxi162Scf00323g00924 Petunia axillaris HOM05D004817 ORTHO05D005790 1.2e-14 82.8 67 64.2
AL3G30650 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 2.0e-14 82.0 76 57.9
AT3G17580 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 2.0e-14 82.0 82 56.1
BcaB06g25835 Brassica carinata HOM05D004817 ORTHO05D005790 2.0e-14 82.0 80 56.2
CARHR092890 Cardamine hirsuta HOM05D004817 ORTHO05D005790 2.0e-14 82.0 76 57.9
A05p32270 Brassica napus HOM05D004817 ORTHO05D005790 2.6e-14 81.6 83 55.4
BraA05t22056Z Brassica rapa HOM05D004817 ORTHO05D005790 2.6e-14 81.6 83 55.4
Carub.0003s1729 Capsella rubella HOM05D004817 ORTHO05D005790 2.6e-14 81.6 80 56.2
unitig_21.g20684 Utricularia gibba HOM05D004817 ORTHO05D005790 2.6e-14 81.6 73 56.2
BcaC05g27577 Brassica carinata HOM05D004817 ORTHO05D005790 3.4e-14 81.3 73 61.6
A05p21090 Brassica napus HOM05D004817 ORTHO05D005790 3.4e-14 81.3 79 59.5
C05p35610 Brassica napus HOM05D004817 ORTHO05D005790 3.4e-14 81.3 73 61.6
BolC5t32277H Brassica oleracea HOM05D004817 ORTHO05D005790 3.4e-14 81.3 79 59.5
BraA05t21012Z Brassica rapa HOM05D004817 ORTHO05D005790 3.4e-14 81.3 79 59.5
PSO761G0543 Papaver somniferum HOM05D004817 ORTHO05D005790 3.4e-14 81.3 72 62.5
Sp3g15710 Schrenkiella parvula HOM05D004817 ORTHO05D005790 3.4e-14 81.3 83 55.4
BcaB07g33764 Brassica carinata HOM05D004817 ORTHO05D005790 4.5e-14 80.9 79 59.5
Thhalv10022414m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 4.5e-14 80.9 83 55.4
BcaC05g28773 Brassica carinata HOM05D004817 ORTHO05D005790 5.9e-14 80.5 77 55.8
BcaC08g43030 Brassica carinata HOM05D004817 ORTHO05D005790 5.9e-14 80.5 73 60.3
C06p02830 Brassica napus HOM05D004817 ORTHO05D005790 5.9e-14 80.5 73 60.3
BolC6t35412H Brassica oleracea HOM05D004817 ORTHO05D005790 5.9e-14 80.5 73 60.3
DCAR_023420 Daucus carota HOM05D004817 ORTHO05D005790 5.9e-14 80.5 79 59.5
C05p48800 Brassica napus HOM05D004817 ORTHO05D005790 7.7e-14 80.1 83 54.2
BolC5t33617H Brassica oleracea HOM05D004817 ORTHO05D005790 7.7e-14 80.1 83 54.2
DCAR_026926 Daucus carota HOM05D004817 ORTHO05D005790 7.7e-14 80.1 79 54.4
Carub.0001s3746 Capsella rubella HOM05D004817 ORTHO05D005790 1.0e-13 79.7 81 56.8
Aa31LG10G5430 Aethionema arabicum HOM05D004817 ORTHO05D005790 1.3e-13 79.3 81 55.6
BcaC01g03751 Brassica carinata HOM05D004817 ORTHO05D005790 1.3e-13 79.3 83 54.2
BolC3t17174H Brassica oleracea HOM05D004817 ORTHO05D005790 1.3e-13 79.3 83 54.2
Thhalv10011909m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 1.3e-13 79.3 79 58.2
AT1G48330 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 1.7e-13 79.0 76 57.9
BcaB04g17438 Brassica carinata HOM05D004817 ORTHO05D005790 1.7e-13 79.0 78 60.3
BcaB04g18952 Brassica carinata HOM05D004817 ORTHO05D005790 1.7e-13 79.0 83 54.2
C03p48950 Brassica napus HOM05D004817 ORTHO05D005790 1.7e-13 79.0 83 54.2
BraA03t13178Z Brassica rapa HOM05D004817 ORTHO05D005790 1.7e-13 79.0 83 54.2
BcaC07g37143 Brassica carinata HOM05D004817 ORTHO05D005790 2.2e-13 78.6 78 55.1
A08p04790 Brassica napus HOM05D004817 ORTHO05D005790 2.2e-13 78.6 78 55.1
C08p05160 Brassica napus HOM05D004817 ORTHO05D005790 2.2e-13 78.6 72 56.9
BraA06t23656Z Brassica rapa HOM05D004817 ORTHO05D005790 2.2e-13 78.6 79 58.2
BraA08t32509Z Brassica rapa HOM05D004817 ORTHO05D005790 2.2e-13 78.6 78 55.1
Sp1g35290 Schrenkiella parvula HOM05D004817 ORTHO05D005790 2.2e-13 78.6 78 55.1
Aa31LG8G4450 Aethionema arabicum HOM05D004817 ORTHO05D005790 2.9e-13 78.2 86 53.5
CARHR037950 Cardamine hirsuta HOM05D004817 ORTHO05D005790 2.9e-13 78.2 78 55.1
Eucgr.H01515 Eucalyptus grandis HOM05D004817 ORTHO05D005790 2.9e-13 78.2 78 56.4
Nitab4.5_0000978g0020 Nicotiana tabacum HOM05D004817 ORTHO05D005790 2.9e-13 78.2 65 63.1
CDE08G0719 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 3.8e-13 77.8 63 57.1
AL1G54940 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 5.0e-13 77.4 79 54.4
A03p40250 Brassica napus HOM05D004817 ORTHO05D005790 5.0e-13 77.4 83 53.0
BcaC09g48714 Brassica carinata HOM05D004817 ORTHO05D005790 1.1e-12 76.3 83 51.8
A01p36770 Brassica napus HOM05D004817 ORTHO05D005790 1.4e-12 75.9 84 51.2
BraA01t03738Z Brassica rapa HOM05D004817 ORTHO05D005790 1.4e-12 75.9 84 51.2
BcaB04g20835 Brassica carinata HOM05D004817 ORTHO05D005790 1.9e-12 75.5 84 51.2
unitig_744.g24175 Utricularia gibba HOM05D004817 ORTHO05D005790 1.9e-12 75.5 73 53.4
Nitab4.5_0003998g0090 Nicotiana tabacum HOM05D004817 ORTHO05D005790 3.2e-12 74.7 64 60.9
TAR365G0774 Trochodendron aralioides HOM05D004817 ORTHO05D005790 5.5e-12 73.9 87 50.6
CANSAT78G0586 Cannabis sativa HOM05D004817 ORTHO05D005790 1.6e-11 72.4 82 53.7
Zm00001eb332330 Zea mays HOM05D004817 ORTHO05D005790 2.7e-11 71.6 74 50.0
ATR0796G174 Amborella trichopoda HOM05D004817 ORTHO05D005790 7.9e-11 70.1 60 60.0
Zm00001eb129600 Zea mays HOM05D004817 ORTHO05D005790 7.9e-11 70.1 75 50.7
DCAR_002559 Daucus carota HOM05D004817 ORTHO05D005790 1.0e-10 69.7 89 47.2
DCAR_030417 Daucus carota HOM05D004817 ORTHO05D005790 1.4e-10 69.3 94 47.9
HPP92_010590 Vanilla planifolia HOM05D004817 ORTHO05D005790 1.1e-09 66.2 53 67.9
Os01g0288200 Oryza sativa ssp. japonica HOM05D004817 ORTHO05D005790 3.3e-09 64.7 74 50.0


User provided reference genes

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