Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p014618 Quercus lobata HOM05D039620 ORTHO05D000959 7.2e-62 240.4 117 100.0
QL05p084072 Quercus lobata HOM05D039620 ORTHO05D000959 5.7e-43 177.6 96 88.5
QL05p084135 Quercus lobata HOM05D000519 ORTHO05D000959 4.4e-27 124.8 121 57.0
Cfa000088 Carpinus fangiana HOM05D000519 ORTHO05D000959 4.9e-18 94.7 120 45.8
QL05p084091 Quercus lobata HOM05D039620 ORTHO05D000959 2.4e-17 92.4 47 91.5
CiPaw.09G103500 Carya illinoinensis HOM05D000519 ORTHO05D000959 5.4e-17 91.3 112 48.2
QL05p069227 Quercus lobata HOM05D000519 ORTHO05D000959 7.0e-17 90.9 120 47.5
QL05p069213 Quercus lobata HOM05D000519 ORTHO05D000959 1.6e-16 89.7 121 46.3
Hma1.2p1_0657F.1_g197050 Hydrangea macrophylla HOM05D000519 ORTHO05D000959 8.6e-15 84.0 121 41.3
QL05p084144 Quercus lobata HOM05D000519 ORTHO05D000959 4.3e-14 81.6 103 43.7
Lalb_Chr18g0057041 Lupinus albus HOM05D000519 ORTHO05D000959 1.6e-13 79.7 111 40.5
VMungo0540G0061 Vigna mungo HOM05D000519 ORTHO05D000959 1.6e-13 79.7 114 40.4
Haze_09252 Corylus avellana HOM05D000519 ORTHO05D000959 6.2e-13 77.8 95 44.2
arahy.Tifrunner.gnm1.ann1.L1FG9J Arachis hypogaea HOM05D000519 ORTHO05D000959 1.4e-12 76.6 86 46.5
Ciclev10002632m.g Citrus clementina HOM05D000519 ORTHO05D000959 2.3e-12 75.9 85 44.7
TPR.G30458 Trifolium pratense HOM05D000519 ORTHO05D000959 2.3e-12 75.9 118 42.4
Lalb_Chr20g0119301 Lupinus albus HOM05D000519 ORTHO05D000959 3.1e-12 75.5 117 39.3
Medtr4g133540 Medicago truncatula HOM05D000519 ORTHO05D000959 3.1e-12 75.5 85 42.4
Phvul.006G142600 Phaseolus vulgaris HOM05D000519 ORTHO05D000959 3.1e-12 75.5 118 37.3
Phvul.003G084300 Phaseolus vulgaris HOM05D000519 ORTHO05D000959 5.2e-12 74.7 118 39.8
BcaB01g03103 Brassica carinata HOM05D000519 ORTHO05D000959 6.8e-12 74.3 114 41.2
Medtr2g026040 Medicago truncatula HOM05D000519 ORTHO05D000959 6.8e-12 74.3 119 39.5
Cfa019521 Carpinus fangiana HOM05D000519 ORTHO05D000959 8.9e-12 73.9 112 39.3
GSVIVG01003320001 Vitis vinifera HOM05D000519 ORTHO05D000959 8.9e-12 73.9 113 38.9
Psat2g010240 Pisum sativum HOM05D000519 ORTHO05D000959 1.2e-11 73.6 89 44.9
Medtr4g095630 Medicago truncatula HOM05D000519 ORTHO05D000959 1.5e-11 73.2 122 36.1
Psat4g004120 Pisum sativum HOM05D000519 ORTHO05D000959 1.5e-11 73.2 109 40.4
VMungo1215G1198 Vigna mungo HOM05D000519 ORTHO05D000959 1.5e-11 73.2 118 37.3
Ciclev10017209m.g Citrus clementina HOM05D000519 ORTHO05D000959 2.0e-11 72.8 84 44.0
Duzib192G0996 Durio zibethinus HOM05D000519 ORTHO05D000959 2.6e-11 72.4 86 41.9
Psat4g004160 Pisum sativum HOM05D000519 ORTHO05D000959 2.6e-11 72.4 118 39.0
Haze_06945 Corylus avellana HOM05D000519 ORTHO05D000959 4.4e-11 71.6 117 41.0
Glyma.07G266000 Glycine max HOM05D000519 ORTHO05D000959 4.4e-11 71.6 117 41.0
Ciclev10003705m.g Citrus clementina HOM05D000519 ORTHO05D000959 5.8e-11 71.2 67 47.8
Ciclev10004025m.g Citrus clementina HOM05D000519 ORTHO05D000959 7.5e-11 70.9 80 43.8
Psat4g004080 Pisum sativum HOM05D000519 ORTHO05D000959 7.5e-11 70.9 110 38.2
TPR.G35340 Trifolium pratense HOM05D000519 ORTHO05D000959 1.3e-10 70.1 116 34.5
Manes.09G039400 Manihot esculenta HOM05D000519 ORTHO05D000959 1.7e-10 69.7 86 43.0
Ciclev10003263m.g Citrus clementina HOM05D000519 ORTHO05D000959 2.2e-10 69.3 67 47.8
Ciclev10009506m.g Citrus clementina HOM05D000519 ORTHO05D000959 2.2e-10 69.3 95 38.9
TPR.G33246 Trifolium pratense HOM05D000519 ORTHO05D000959 2.2e-10 69.3 87 37.9
TPR.G5945 Trifolium pratense HOM05D004898 ORTHO05D005574 2.2e-10 69.3 85 42.4
Aqoxy1G04038 Aquilegia oxysepala HOM05D000519 ORTHO05D000959 2.9e-10 68.9 85 42.4
AL8G10420 Arabidopsis lyrata HOM05D000519 ORTHO05D000959 2.9e-10 68.9 120 41.7
Ca_21040_v3 Cicer arietinum L. HOM05D000519 ORTHO05D000959 2.9e-10 68.9 109 36.7
TPR.G21870 Trifolium pratense HOM05D000519 ORTHO05D000959 2.9e-10 68.9 116 34.5
Nn5g27758 Nelumbo nucifera HOM05D000519 ORTHO05D000959 4.9e-10 68.2 105 37.1
BcaC04g21616 Brassica carinata HOM05D000519 ORTHO05D000959 8.3e-10 67.4 113 38.1
C09p29840 Brassica napus HOM05D000519 ORTHO05D000959 8.3e-10 67.4 113 38.1
BolC9t55847H Brassica oleracea HOM05D000519 ORTHO05D000959 8.3e-10 67.4 113 38.1
Carub.0004s1417 Capsella rubella HOM05D000519 ORTHO05D000959 8.3e-10 67.4 111 36.9
AT5G47550 Arabidopsis thaliana HOM05D000519 ORTHO05D000959 1.1e-09 67.0 120 40.8
Oeu009405.1 Olea europaea HOM05D000519 ORTHO05D000959 1.1e-09 67.0 82 39.0
TPR.G21872 Trifolium pratense HOM05D000519 ORTHO05D000959 1.1e-09 67.0 112 34.8
AL4G28250 Arabidopsis lyrata HOM05D000519 ORTHO05D000959 1.4e-09 66.6 110 39.1
Sc24g0000290 Simmondsia chinensis HOM05D000519 ORTHO05D000959 1.4e-09 66.6 110 37.3
TPR.G9095 Trifolium pratense HOM05D000519 ORTHO05D000959 1.4e-09 66.6 112 34.8
Rhsim13G0144500 Rhododendron simsii HOM05D000519 ORTHO05D000959 1.9e-09 66.2 118 33.9
arahy.Tifrunner.gnm1.ann1.WI67VP Arachis hypogaea HOM05D000519 ORTHO05D000959 2.4e-09 65.9 86 41.9
A02p31410 Brassica napus HOM05D000919 ORTHO05D001187 2.4e-09 65.9 98 39.8
Manes.03G153900 Manihot esculenta HOM05D000519 ORTHO05D000959 2.4e-09 65.9 86 41.9
Manes.08G041000 Manihot esculenta HOM05D000519 ORTHO05D000959 3.2e-09 65.5 86 41.9
A09p23090 Brassica napus HOM05D000519 ORTHO05D000959 4.1e-09 65.1 111 36.9
BraA09t37913Z Brassica rapa HOM05D000519 ORTHO05D000959 4.1e-09 65.1 111 36.9
A09p24850 Brassica napus HOM05D000519 ORTHO05D000959 5.4e-09 64.7 119 37.0
C09p31850 Brassica napus HOM05D000519 ORTHO05D000959 5.4e-09 64.7 117 35.9
CDE06G1510 Ceratophyllum demersum HOM05D000519 ORTHO05D000959 5.4e-09 64.7 67 43.3
Psat7g244200 Pisum sativum HOM05D000519 ORTHO05D000959 5.4e-09 64.7 108 35.2
A09p24860 Brassica napus HOM05D000519 ORTHO05D000959 7.1e-09 64.3 117 36.8
Sp2g12280 Schrenkiella parvula HOM05D000519 ORTHO05D000959 7.1e-09 64.3 115 38.3
C07p31200 Brassica napus HOM05D000519 ORTHO05D000959 9.2e-09 63.9 117 36.8
CSS0026174 Camellia sinensis var. sinensis HOM05D000519 ORTHO05D000959 9.2e-09 63.9 111 36.0
CDE07G0061 Ceratophyllum demersum HOM05D000919 ORTHO05D001187 9.2e-09 63.9 67 41.8
Nn1g07421 Nelumbo nucifera HOM05D000519 ORTHO05D000959 9.2e-09 63.9 106 35.8
TPR.G19994 Trifolium pratense HOM05D000519 ORTHO05D000959 9.2e-09 63.9 120 36.7
A06p44980 Brassica napus HOM05D000519 ORTHO05D000959 1.2e-08 63.5 117 36.8
BolC7t43661H Brassica oleracea HOM05D000519 ORTHO05D000959 1.2e-08 63.5 117 36.8
BraA06t27369Z Brassica rapa HOM05D000519 ORTHO05D000959 1.2e-08 63.5 117 36.8
BraA09t38071Z Brassica rapa HOM05D000519 ORTHO05D000959 1.2e-08 63.5 123 35.8
EL10Ac8g20214 Beta vulgaris HOM05D000519 ORTHO05D000959 1.6e-08 63.2 100 36.0
BcaC06g31374 Brassica carinata HOM05D000519 ORTHO05D000959 1.6e-08 63.2 115 36.5
ClCG01G010410 Citrullus lanatus HOM05D000519 ORTHO05D000959 1.6e-08 63.2 110 38.2
Psat1g175400 Pisum sativum HOM05D000519 ORTHO05D000959 1.6e-08 63.2 85 40.0
DCAR_002225 Daucus carota HOM05D000519 ORTHO05D000959 2.1e-08 62.8 85 42.4
ClCG01G010530 Citrullus lanatus HOM05D000519 ORTHO05D000959 2.7e-08 62.4 64 45.3
RcHm_v2.0_Chr5g0001051 Rosa chinensis HOM05D000519 ORTHO05D000959 2.7e-08 62.4 110 32.7
BcaB07g30771 Brassica carinata HOM05D000519 ORTHO05D000959 3.5e-08 62.0 111 35.1
BcaC04g21429 Brassica carinata HOM05D000519 ORTHO05D000959 4.6e-08 61.6 90 40.0
C09p31910 Brassica napus HOM05D000519 ORTHO05D000959 4.6e-08 61.6 90 40.0
BolC9t56041H Brassica oleracea HOM05D000519 ORTHO05D000959 4.6e-08 61.6 90 40.0
BcaB07g30638 Brassica carinata HOM05D000519 ORTHO05D000959 6.0e-08 61.2 100 35.0
CSS0015208 Camellia sinensis var. sinensis HOM05D000519 ORTHO05D000959 6.0e-08 61.2 85 38.8
ClCG09G021860 Citrullus lanatus HOM05D000519 ORTHO05D000959 6.0e-08 61.2 86 36.0
Thhalv10001076m.g Eutrema salsugineum HOM05D000519 ORTHO05D000959 6.0e-08 61.2 92 35.9
Carub.0008s0023 Capsella rubella HOM05D000519 ORTHO05D000959 7.8e-08 60.8 67 40.3
ClCG01G010520 Citrullus lanatus HOM05D000519 ORTHO05D000959 7.8e-08 60.8 67 41.8
Nn1g03277 Nelumbo nucifera HOM05D000519 ORTHO05D000959 7.8e-08 60.8 106 32.1
CDE04G0434 Ceratophyllum demersum HOM05D000519 ORTHO05D000959 1.0e-07 60.5 67 43.3
Medtr5g091280 Medicago truncatula HOM05D000519 ORTHO05D000959 1.0e-07 60.5 118 38.1
Sed0027688 Sechium edule HOM05D052048 ORTHO05D050836 1.0e-07 60.5 112 39.3
Medtr2g103740 Medicago truncatula HOM05D000519 ORTHO05D000959 1.3e-07 60.1 112 35.7
Psat1g199880 Pisum sativum HOM05D000519 ORTHO05D000959 1.3e-07 60.1 105 37.1
Sc17g0007820 Simmondsia chinensis HOM05D000519 ORTHO05D000959 1.7e-07 59.7 82 37.8
TPR.G5977 Trifolium pratense HOM05D000519 ORTHO05D000959 1.7e-07 59.7 84 38.1
BcaC03g16971 Brassica carinata HOM05D000519 ORTHO05D000959 2.3e-07 59.3 100 36.0
C02p48750 Brassica napus HOM05D000919 ORTHO05D001187 2.3e-07 59.3 100 36.0
BolC2t10969H Brassica oleracea HOM05D000519 ORTHO05D000959 2.3e-07 59.3 100 36.0
ClCG01G010490 Citrullus lanatus HOM05D000519 ORTHO05D000959 2.3e-07 59.3 81 39.5
CsaV3_1G017110 Cucumis sativus L. HOM05D000519 ORTHO05D000959 2.3e-07 59.3 63 44.4
Thhalv10017424m.g Eutrema salsugineum HOM05D000519 ORTHO05D000959 2.3e-07 59.3 86 36.0
Psat1g175360 Pisum sativum HOM05D000519 ORTHO05D000959 2.3e-07 59.3 100 35.0
MELO3C025554.2 Cucumis melo HOM05D000519 ORTHO05D000959 3.0e-07 58.9 89 39.3
TPR.G35897 Trifolium pratense HOM05D000519 ORTHO05D000959 5.1e-07 58.2 83 38.6
CAN.G1263.20 Capsicum annuum HOM05D000519 ORTHO05D000959 6.6e-07 57.8 92 33.7
Eucgr.E03919 Eucalyptus grandis HOM05D000519 ORTHO05D000959 6.6e-07 57.8 85 32.9
Lsat_1_v5_gn_1_114780 Lactuca sativa HOM05D000519 ORTHO05D000959 6.6e-07 57.8 67 38.8
PGR083G0826 Punica granatum HOM05D000519 ORTHO05D000959 6.6e-07 57.8 113 32.7
RcHm_v2.0_Chr5g0001251 Rosa chinensis HOM05D000054 ORTHO05D000171 6.6e-07 57.8 81 37.0
SGA_v2.0_scaffold16G07679 Striga asiatica HOM05D000519 ORTHO05D000959 6.6e-07 57.8 113 30.1
ClCG01G010470 Citrullus lanatus HOM05D000519 ORTHO05D000959 8.6e-07 57.4 64 43.8
ClCG01G010440 Citrullus lanatus HOM05D000519 ORTHO05D000959 1.1e-06 57.0 81 37.0
CsaV3_1G017120 Cucumis sativus L. HOM05D000519 ORTHO05D000959 1.1e-06 57.0 64 42.2
Medtr4g040310 Medicago truncatula HOM05D000519 ORTHO05D000959 1.1e-06 57.0 70 35.7
RcHm_v2.0_Chr5g0010271 Rosa chinensis HOM05D000519 ORTHO05D000959 1.1e-06 57.0 116 31.9
Sed0023459 Sechium edule HOM05D000519 ORTHO05D000959 1.1e-06 57.0 64 40.6
Ah.14g087560 Amaranthus hybridus HOM05D000519 ORTHO05D000959 1.9e-06 56.2 67 35.8
Migut.M01410 Erythranthe guttata HOM05D000519 ORTHO05D000959 1.9e-06 56.2 93 30.1
Aa31LG9G7000 Aethionema arabicum HOM05D000519 ORTHO05D000959 2.5e-06 55.8 118 34.7
MSTRG.7159 Avicennia marina HOM05D000519 ORTHO05D000959 2.5e-06 55.8 91 36.3
arahy.Tifrunner.gnm1.ann1.LLB9AP Arachis hypogaea HOM05D000519 ORTHO05D000959 3.3e-06 55.5 80 37.5
BolC4t23227H Brassica oleracea HOM05D000519 ORTHO05D000959 3.3e-06 55.5 73 39.7
HanXRQChr04g0096481 Helianthus annuus HOM05D000519 ORTHO05D000959 3.3e-06 55.5 93 34.4
TWI59G0838 Tripterygium wilfordii HOM05D000519 ORTHO05D000959 3.3e-06 55.5 118 33.1
BcaB01g00968 Brassica carinata HOM05D000519 ORTHO05D000959 4.3e-06 55.1 90 40.0
Medtr2g076800 Medicago truncatula HOM05D000519 ORTHO05D000959 4.3e-06 55.1 113 33.6
Medtr4g017620 Medicago truncatula HOM05D000519 ORTHO05D000959 5.6e-06 54.7 113 33.6
Zm00001eb168970 Zea mays HOM05D000519 ORTHO05D000959 9.5e-06 53.9 64 39.1
Zm00001eb168980 Zea mays HOM05D000519 ORTHO05D000959 9.5e-06 53.9 64 39.1


User provided reference genes

Program Settings