Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p014174 Quercus lobata HOM05D004696 ORTHO05D005645 4.2e-113 411.4 207 100.0
CiPaw.02G069300 Carya illinoinensis HOM05D004696 ORTHO05D005645 6.1e-88 327.8 207 81.2
Haze_00771 Corylus avellana HOM05D004696 ORTHO05D005645 1.3e-87 326.6 207 79.2
Cfa015727 Carpinus fangiana HOM05D004696 ORTHO05D005645 8.8e-87 323.9 207 78.7
Dinv29511 Davidia involucrata HOM05D004696 ORTHO05D005645 1.8e-76 289.7 207 71.5
Dinv18020 Davidia involucrata HOM05D004696 ORTHO05D005645 2.4e-76 289.3 207 72.5
CSS0007787 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 3.1e-76 288.9 209 70.3
Manes.11G020900 Manihot esculenta HOM05D004696 ORTHO05D005645 6.9e-76 287.7 207 70.5
Lalb_Chr17g0338851 Lupinus albus HOM05D004696 ORTHO05D005645 4.5e-75 285.0 207 68.6
Cpa.g.sc146.25 Carica papaya HOM05D004696 ORTHO05D005645 5.9e-75 284.6 209 69.4
Lsat_1_v5_gn_1_39920 Lactuca sativa HOM05D004696 ORTHO05D005645 1.0e-74 283.9 207 68.6
Lalb_Chr10g0096421 Lupinus albus HOM05D004696 ORTHO05D005645 1.0e-74 283.9 207 70.0
Ciclev10005920m.g Citrus clementina HOM05D004696 ORTHO05D005645 2.9e-74 282.3 208 68.8
Actinidia22921 Actinidia chinensis HOM05D004696 ORTHO05D005645 1.9e-73 279.6 205 69.3
Atru.chr4.3144 Acer truncatum HOM05D004696 ORTHO05D005645 2.5e-73 279.3 208 69.7
VMungo0331G1167 Vigna mungo HOM05D004696 ORTHO05D005645 4.2e-73 278.5 208 68.3
Thecc.04G312600 Theobroma cacao HOM05D004696 ORTHO05D005645 5.5e-73 278.1 209 67.0
TWI73G0566 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 7.2e-73 277.7 207 68.6
GSVIVG01017685001 Vitis vinifera HOM05D004696 ORTHO05D005645 7.2e-73 277.7 209 70.3
Manes.03G211700 Manihot esculenta HOM05D004696 ORTHO05D005645 9.4e-73 277.3 207 68.6
vmacro08011 Vaccinium macrocarpon HOM05D004696 ORTHO05D005645 1.2e-72 276.9 208 66.8
CsaV3_6G008150 Cucumis sativus L. HOM05D004696 ORTHO05D005645 1.6e-72 276.6 207 67.1
TAR629G2307 Trochodendron aralioides HOM05D004696 ORTHO05D005645 1.6e-72 276.6 207 69.6
HanXRQChr09g0238571 Helianthus annuus HOM05D004696 ORTHO05D005645 4.7e-72 275.0 207 66.2
Lj2g0021207 Lotus japonicus HOM05D004696 ORTHO05D005645 6.1e-72 274.6 208 66.8
Phvul.003G045400 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 8.0e-72 274.2 207 68.1
Sed0019137 Sechium edule HOM05D004696 ORTHO05D005645 1.0e-71 273.9 206 68.9
Glyma.01G218300 Glycine max HOM05D004696 ORTHO05D005645 1.4e-71 273.5 207 67.6
arahy.Tifrunner.gnm1.ann1.61U0KE Arachis hypogaea HOM05D004696 ORTHO05D005645 3.0e-71 272.3 208 66.8
PGR031G3538 Punica granatum HOM05D004696 ORTHO05D005645 6.7e-71 271.2 209 65.1
arahy.Tifrunner.gnm1.ann1.BY2PXQ Arachis hypogaea HOM05D004696 ORTHO05D005645 1.1e-70 270.4 208 66.8
Sabra02G0114900 Salix brachista HOM05D004696 ORTHO05D005645 1.5e-70 270.0 202 68.8
Glyma.11G024900 Glycine max HOM05D004696 ORTHO05D005645 2.0e-70 269.6 207 67.6
Phvul.010G140500 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 2.0e-70 269.6 208 66.3
arahy.Tifrunner.gnm1.ann1.NQRV37 Arachis hypogaea HOM05D004696 ORTHO05D005645 3.3e-70 268.9 208 66.8
Potri.008G206400 Populus trichocarpa HOM05D004696 ORTHO05D005645 5.7e-70 268.1 202 68.3
Prupe.1G105700 Prunus persica HOM05D004696 ORTHO05D005645 5.7e-70 268.1 209 66.5
Duzib151G0078 Durio zibethinus HOM05D004696 ORTHO05D005645 7.4e-70 267.7 209 65.6
Eucgr.B03956 Eucalyptus grandis HOM05D004696 ORTHO05D005645 9.7e-70 267.3 208 64.9
Gorai.005G071900 Gossypium raimondii HOM05D004696 ORTHO05D005645 9.7e-70 267.3 213 62.9
Gohir.A02G058200 Gossypium hirsutum HOM05D004696 ORTHO05D005645 1.3e-69 266.9 213 63.4
TWI09G0971 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 1.3e-69 266.9 207 66.2
CAN.G305.38 Capsicum annuum HOM05D004696 ORTHO05D005645 1.7e-69 266.5 207 64.3
Lj4g0004970 Lotus japonicus HOM05D004696 ORTHO05D005645 1.7e-69 266.5 208 65.4
Solyc05g053220.3 Solanum lycopersicum HOM05D004696 ORTHO05D005645 2.2e-69 266.2 207 64.7
Sopen05g031730 Solanum pennellii HOM05D004696 ORTHO05D005645 2.2e-69 266.2 207 64.7
Psat7g133720 Pisum sativum HOM05D004696 ORTHO05D005645 2.8e-69 265.8 208 63.9
Potri.010G002100 Populus trichocarpa HOM05D004696 ORTHO05D005645 4.8e-69 265.0 201 68.2
Lsat_1_v5_gn_6_92581 Lactuca sativa HOM05D004696 ORTHO05D005645 8.2e-69 264.2 207 64.7
PGSC0003DMG400027150 Solanum tuberosum HOM05D004696 ORTHO05D005645 8.2e-69 264.2 207 63.8
CANSAT78G0332 Cannabis sativa HOM05D004696 ORTHO05D005645 1.8e-68 263.1 209 65.1
Gohir.D02G064000 Gossypium hirsutum HOM05D004696 ORTHO05D005645 3.1e-68 262.3 213 62.0
Psat1g042400 Pisum sativum HOM05D004696 ORTHO05D005645 5.3e-68 261.5 208 63.9
Sc17g0002920 Simmondsia chinensis HOM05D004696 ORTHO05D005645 7.0e-68 261.2 210 63.8
Glyma.14G125600 Glycine max HOM05D004696 ORTHO05D005645 2.0e-67 259.6 208 64.9
Ah.06g192450 Amaranthus hybridus HOM05D004696 ORTHO05D005645 2.6e-67 259.2 208 62.5
Sabra08G0150400 Salix brachista HOM05D004696 ORTHO05D005645 4.5e-67 258.5 222 62.6
Ah.16g105210 Amaranthus hybridus HOM05D004696 ORTHO05D005645 1.0e-66 257.3 208 62.5
MD13G1140700 Malus domestica HOM05D004696 ORTHO05D005645 1.7e-66 256.5 207 62.8
FvH4_4g21490 Fragaria vesca HOM05D004696 ORTHO05D005645 2.9e-66 255.8 207 64.3
Medtr5g081850 Medicago truncatula HOM05D004696 ORTHO05D005645 3.8e-66 255.4 208 62.5
FAN12G0616 Fragaria x ananassa HOM05D004696 ORTHO05D005645 1.1e-65 253.8 207 64.3
FAN07G1680 Fragaria x ananassa HOM05D004696 ORTHO05D005645 1.5e-65 253.4 207 63.8
RcHm_v2.0_Chr4g0427441 Rosa chinensis HOM05D004696 ORTHO05D005645 1.5e-65 253.4 209 63.6
Aqoxy4G02417 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 2.5e-65 252.7 206 63.6
MD07G1065600 Malus domestica HOM05D004696 ORTHO05D005645 3.2e-65 252.3 207 62.3
Sabra02G0116500 Salix brachista HOM05D004696 ORTHO05D005645 3.2e-65 252.3 222 62.2
MD16G1136700 Malus domestica HOM05D004696 ORTHO05D005645 1.0e-63 247.3 207 63.3
AUR62020507 Chenopodium quinoa HOM05D004696 ORTHO05D005645 1.8e-63 246.5 199 61.8
Aqoxy5G04183 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 3.0e-63 245.7 207 61.8
EL10Ac4g08571 Beta vulgaris HOM05D004696 ORTHO05D005645 3.0e-63 245.7 202 62.9
TPR.G8061 Trifolium pratense HOM05D004696 ORTHO05D005645 8.8e-63 244.2 209 59.8
Cc00_g15640 Coffea canephora HOM05D004696 ORTHO05D005645 2.6e-62 242.7 228 57.9
Cc03_g00150 Coffea canephora HOM05D004696 ORTHO05D005645 2.6e-62 242.7 212 59.4
MSTRG.24614 Avicennia marina HOM05D004696 ORTHO05D005645 4.4e-62 241.9 202 62.4
ECA220G0002 Erigeron canadensis HOM05D004696 ORTHO05D005645 4.4e-62 241.9 194 62.4
THA.LOC104827108 Tarenaya hassleriana HOM05D004696 ORTHO05D005645 2.2e-61 239.6 200 59.5
MBI03_g01483_MAGBIO Magnolia biondii HOM05D004696 ORTHO05D005645 3.7e-61 238.8 195 64.1
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 6.3e-61 238.0 205 60.5
SGA_v2.0_scaffold49G18399 Striga asiatica HOM05D004696 ORTHO05D005645 6.3e-61 238.0 206 63.6
Migut.N00002 Erythranthe guttata HOM05D004696 ORTHO05D005645 1.8e-60 236.5 207 60.4
SalBow2G0725 Salvia bowleyana HOM05D001196 ORTHO05D005911 4.1e-60 235.3 205 61.5
unitig_8.g2889 Utricularia gibba HOM05D004696 ORTHO05D005645 1.6e-59 233.4 206 59.7
Lj6C700T16 Lonicera japonica HOM05D004696 ORTHO05D005645 2.7e-59 232.6 207 58.0
Nitab4.5_0008086g0030 Nicotiana tabacum HOM05D004696 ORTHO05D005645 1.1e-57 227.3 207 58.9
Hma1.2p1_2234F.1_g317690 Hydrangea macrophylla HOM05D004696 ORTHO05D000003 1.5e-57 226.9 263 51.7
Oeu022705.1 Olea europaea HOM05D004696 ORTHO05D005645 2.5e-57 226.1 187 61.5
Zm00001eb189970 Zea mays HOM05D004696 ORTHO05D005645 5.5e-57 224.9 207 56.5
AUR62015697 Chenopodium quinoa HOM05D004696 ORTHO05D005645 2.1e-56 223.0 162 67.3
Os02g0730500 Oryza sativa ssp. japonica HOM05D004696 ORTHO05D005645 6.1e-56 221.5 206 55.3
ClCG06G002080 Citrullus lanatus HOM05D004696 ORTHO05D005645 4.0e-55 218.8 206 56.3
Aqoxy3G02973 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 1.5e-54 216.9 170 65.9
Rhsim04G0248200 Rhododendron simsii HOM05D004696 ORTHO05D005645 4.4e-54 215.3 205 56.1
PSO782G4648 Papaver somniferum HOM05D004696 ORTHO05D005645 5.7e-54 214.9 199 58.3
PSO478G3068 Papaver somniferum HOM05D004696 ORTHO05D005645 9.8e-54 214.2 199 58.3
AL6G41010 Arabidopsis lyrata HOM05D004696 ORTHO05D005645 1.3e-53 213.8 208 56.2
Oeu037627.2 Olea europaea HOM05D004696 ORTHO05D005645 1.7e-53 213.4 308 43.2
PSO063G5897 Papaver somniferum HOM05D004696 ORTHO05D005645 2.2e-53 213.0 207 58.5
PSO832G1751 Papaver somniferum HOM05D004696 ORTHO05D005645 3.7e-53 212.2 209 56.0
Ca_05928_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 4.8e-53 211.8 208 53.4
Ca_06214_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 4.8e-53 211.8 209 53.1
AT5G30495 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 1.1e-52 210.7 208 54.8
Peaxi162Scf00164g00414 Petunia axillaris HOM05D004696 ORTHO05D005645 1.1e-52 210.7 207 54.1
CARHR185500 Cardamine hirsuta HOM05D004696 ORTHO05D005645 5.4e-52 208.4 207 53.6
Thhalv10005420m.g Eutrema salsugineum HOM05D004696 ORTHO05D005645 1.6e-51 206.8 209 53.1
Carub.0002s0865 Capsella rubella HOM05D004696 ORTHO05D005645 3.5e-51 205.7 207 55.1
arahy.Tifrunner.gnm1.ann1.09FGJA Arachis hypogaea HOM05D004696 ORTHO05D005645 1.0e-50 204.1 208 54.3
Aa31LG2G12130 Aethionema arabicum HOM05D004696 ORTHO05D005645 1.3e-50 203.8 208 53.4
Sp2g19960 Schrenkiella parvula HOM05D004696 ORTHO05D005645 1.7e-50 203.4 208 52.4
BcaB04g19639 Brassica carinata HOM05D004696 ORTHO05D005645 2.9e-50 202.6 204 52.5
BcaC04g23715 Brassica carinata HOM05D004696 ORTHO05D005645 3.8e-50 202.2 207 53.1
BolC9t53474H Brassica oleracea HOM05D004696 ORTHO05D005645 4.2e-49 198.7 207 52.7
BraA09t36143Z Brassica rapa HOM05D004696 ORTHO05D005645 5.5e-49 198.4 207 52.2
A09p05040 Brassica napus HOM05D004696 ORTHO05D005645 9.5e-49 197.6 207 52.2
C09p05450 Brassica napus HOM05D004696 ORTHO05D005645 1.2e-48 197.2 207 52.2
Actinidia01063 Actinidia chinensis HOM05D004696 ORTHO05D005645 1.6e-48 196.8 205 52.7
Nitab4.5_0000745g0120 Nicotiana tabacum HOM05D004696 ORTHO05D005645 6.1e-48 194.9 207 53.1
AT1G54770 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 2.3e-47 193.0 208 54.3
SGA_v2.0_scaffold69G23291 Striga asiatica HOM05D004696 ORTHO05D005645 4.0e-47 192.2 206 54.4
SHI04008 Sapria himalayana HOM05D004696 ORTHO05D005645 6.3e-45 184.9 171 57.9
Nn3g16891 Nelumbo nucifera HOM05D004696 ORTHO05D005645 4.1e-44 182.2 125 71.2
ECA248G3148 Erigeron canadensis HOM05D004696 ORTHO05D005645 5.4e-44 181.8 196 51.5
MELO3C035238.2 Cucumis melo HOM05D004696 ORTHO05D005645 5.6e-41 171.8 176 51.1
Mapoly0084s0020 Marchantia polymorpha HOM05D004696 ORTHO05D005645 8.0e-40 167.9 187 48.7
SEGI_16783 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 1.7e-37 160.2 183 50.3
SEGI_41631 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 3.7e-37 159.1 193 47.7
SMO139G0013 Selaginella moellendorffii HOM05D004696 ORTHO05D005645 3.2e-36 156.0 169 51.5
Pp3c7_450 Physcomitrium patens HOM05D004696 ORTHO05D005645 2.3e-34 149.8 183 48.1
ECA149G0001 Erigeron canadensis HOM05D004696 ORTHO05D005645 3.9e-34 149.1 199 47.2
Lj4g0014561 Lotus japonicus HOM05D004696 ORTHO05D005645 2.6e-30 136.3 110 65.5
Lj4g0016234 Lotus japonicus HOM05D004696 ORTHO05D005645 2.9e-29 132.9 107 65.4
RcHm_v2.0_Chr4g0427481 Rosa chinensis HOM05D004696 ORTHO05D005645 8.3e-29 131.3 102 58.8
HPP92_006011 Vanilla planifolia HOM05D004696 ORTHO05D005645 1.4e-28 130.6 123 54.5
CBR_g41139 Chara braunii HOM05D004696 ORTHO05D005645 9.2e-28 127.9 153 41.2
ATR1127G170 Amborella trichopoda HOM05D004696 ORTHO05D005645 1.2e-27 127.5 123 53.7
CSS0046364 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 5.1e-26 122.1 101 57.4
Zm00001eb253530 Zea mays HOM05D004696 ORTHO05D005645 1.9e-25 120.2 109 59.6
CSS0022818 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 3.6e-24 115.9 100 56.0
Lj2g0010517 Lotus japonicus HOM05D004696 ORTHO05D005645 1.2e-22 110.9 153 44.4
MCO05G434 Micromonas commoda HOM05D004696 ORTHO05D005645 1.5e-22 110.5 162 42.6
BcaC04g19932 Brassica carinata HOM05D004696 ORTHO05D005645 2.6e-22 109.8 120 48.3
BolC9t57816H Brassica oleracea HOM05D004696 ORTHO05D005645 4.4e-22 109.0 120 50.0
TAR371G0358 Trochodendron aralioides HOM05D004696 ORTHO05D005645 4.4e-22 109.0 113 55.8
COL.COLO4_34519 Corchorus olitorius HOM05D004696 ORTHO05D005645 6.4e-21 105.1 127 47.2
AagrBONN_evm.TU.Sc2ySwM_368.1627 Anthoceros agrestis HOM05D004696 ORTHO05D005645 6.0e-19 98.6 131 41.2
PRCOL_00000839 Prasinoderma coloniale HOM05D004696 ORTHO05D005645 6.0e-19 98.6 115 42.6
Lj2g0009432 Lotus japonicus HOM05D004696 ORTHO05D005645 9.5e-17 91.3 101 52.5
Cfa024688 Carpinus fangiana HOM05D004696 ORTHO05D005645 5.2e-15 85.5 187 29.9
QL12p004065 Quercus lobata HOM05D004696 ORTHO05D005645 2.6e-14 83.2 76 64.5
BcaB05g22696 Brassica carinata HOM05D004696 ORTHO05D005645 5.8e-14 82.0 134 38.1
QL04p080373 Quercus lobata HOM05D000023 ORTHO05D000014 2.2e-13 80.1 45 84.4
Zm00001eb026470 Zea mays HOM05D004696 ORTHO05D021106 1.2e-11 74.3 75 53.3
Cre03.g194150 Chlamydomonas reinhardtii HOM05D004696 ORTHO05D005645 2.1e-11 73.6 178 32.6
CSS0030909 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 8.7e-10 68.2 101 39.6
EL10Ac1g01076 Beta vulgaris HOM05D004696 ORTHO05D005645 1.1e-09 67.8 57 61.4
Zm00001eb219180 Zea mays HOM05D004696 ORTHO05D005645 1.9e-09 67.0 75 50.7
Aqoxy5G04095 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 7.3e-09 65.1 92 48.9
QL04p074113 Quercus lobata HOM05D001335 ORTHO05D001184 1.1e-07 61.2 36 77.8
Medtr7g074130 Medicago truncatula HOM05D004696 ORTHO05D005645 1.2e-06 57.8 72 51.4


User provided reference genes

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