Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p013384 Quercus lobata HOM05D005991 ORTHO05D007408 8.5e-127 457.2 267 100.0
Haze_00826 Corylus avellana HOM05D005991 ORTHO05D007408 3.5e-96 355.5 268 76.5
Cfa015696 Carpinus fangiana HOM05D005991 ORTHO05D007408 6.0e-96 354.8 268 76.1
MD13G1147500 Malus domestica HOM05D005991 ORTHO05D007408 1.2e-75 287.3 281 63.0
GSVIVG01017637001 Vitis vinifera HOM05D005991 ORTHO05D007408 1.7e-74 283.5 270 67.4
RcHm_v2.0_Chr4g0426321 Rosa chinensis HOM05D005991 ORTHO05D007408 3.8e-74 282.3 269 65.8
CSS0003210 Camellia sinensis var. sinensis HOM05D005991 ORTHO05D007408 4.9e-74 282.0 273 63.0
Eucgr.H04085 Eucalyptus grandis HOM05D005991 ORTHO05D007408 4.9e-74 282.0 270 60.7
Prupe.1G111000 Prunus persica HOM05D005991 ORTHO05D007408 2.7e-72 276.2 272 66.9
FAN17G2933 Fragaria x ananassa HOM05D005991 ORTHO05D007408 4.6e-72 275.4 269 63.6
Actinidia28298 Actinidia chinensis HOM05D005991 ORTHO05D007408 6.0e-72 275.0 270 63.0
FvH4_4g20890 Fragaria vesca HOM05D005991 ORTHO05D007408 1.0e-71 274.2 269 63.6
TAR362G0621 Trochodendron aralioides HOM05D005991 ORTHO05D007408 1.0e-71 274.2 266 63.2
Dinv05101 Davidia involucrata HOM05D005991 ORTHO05D007408 6.6e-71 271.6 255 64.3
Gorai.005G069300 Gossypium raimondii HOM05D005991 ORTHO05D007408 4.3e-70 268.9 291 64.3
Aqoxy7G00454 Aquilegia oxysepala HOM05D005991 ORTHO05D007408 5.6e-70 268.5 268 63.8
FAN12G0391 Fragaria x ananassa HOM05D005991 ORTHO05D007408 5.6e-70 268.5 277 61.4
CsaV3_6G000060 Cucumis sativus L. HOM05D005991 ORTHO05D007408 7.3e-70 268.1 268 62.7
Lalb_Chr13g0298761 Lupinus albus HOM05D005991 ORTHO05D007408 1.3e-69 267.3 251 64.1
Psat0s2692g0080 Pisum sativum HOM05D005991 ORTHO05D007408 1.3e-69 267.3 252 62.3
Gohir.D02G061600 Gossypium hirsutum HOM05D005991 ORTHO05D007408 1.6e-69 266.9 291 63.9
FAN07G2713 Fragaria x ananassa HOM05D005991 ORTHO05D007408 2.1e-69 266.5 279 61.6
Gohir.A02G056400 Gossypium hirsutum HOM05D005991 ORTHO05D007408 4.8e-69 265.4 291 64.3
MBI18_g36460_MAGBIO Magnolia biondii HOM05D005991 ORTHO05D007408 4.8e-69 265.4 255 62.4
ClCG06G004330 Citrullus lanatus HOM05D005991 ORTHO05D007408 3.1e-68 262.7 268 61.6
Nn3g21864 Nelumbo nucifera HOM05D005991 ORTHO05D007408 4.0e-68 262.3 256 68.4
Glyma.07G232800 Glycine max HOM05D005991 ORTHO05D007408 5.3e-68 261.9 247 62.8
Thecc.04G307900 Theobroma cacao HOM05D005991 ORTHO05D007408 1.2e-67 260.8 323 56.3
Duzib151G0057 Durio zibethinus HOM05D005991 ORTHO05D007408 1.5e-67 260.4 344 56.7
Ca_21401_v3 Cicer arietinum L. HOM05D005991 ORTHO05D007408 2.0e-67 260.0 253 65.6
MELO3C021248.2 Cucumis melo HOM05D005991 ORTHO05D007408 3.4e-67 259.2 247 64.4
Rhsim02G0001600 Rhododendron simsii HOM05D005991 ORTHO05D007408 1.3e-66 257.3 251 63.7
TWI73G0156 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 1.3e-66 257.3 224 68.3
TPR.G12610 Trifolium pratense HOM05D005991 ORTHO05D007408 2.9e-66 256.1 255 65.1
Lj4g0017646 Lotus japonicus HOM05D005991 ORTHO05D007408 3.8e-66 255.8 257 61.1
TWI09G0093 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 6.4e-66 255.0 232 63.8
Oeu009727.1 Olea europaea HOM05D005991 ORTHO05D007408 8.4e-66 254.6 266 60.9
TAR633G0953 Trochodendron aralioides HOM05D005991 ORTHO05D007408 8.4e-66 254.6 267 60.3
vmacro19301 Vaccinium macrocarpon HOM05D005991 ORTHO05D007408 5.5e-65 251.9 254 61.8
TWI53G1476 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 9.3e-65 251.1 244 62.3
Atru.chr4.3094 Acer truncatum HOM05D005991 ORTHO05D007408 2.7e-64 249.6 349 49.3
EL10Ac2g02410 Beta vulgaris HOM05D005991 ORTHO05D007408 4.6e-64 248.8 256 61.7
Migut.I00898 Erythranthe guttata HOM05D005991 ORTHO05D007408 4.6e-64 248.8 270 57.4
Potri.010G151300 Populus trichocarpa HOM05D005991 ORTHO05D007408 5.1e-63 245.4 268 59.0
Sed0009947 Sechium edule HOM05D005991 ORTHO05D007408 5.1e-63 245.4 262 59.5
VMungo1215G0582 Vigna mungo HOM05D005991 ORTHO05D007408 5.1e-63 245.4 246 65.4
PGR004G0142 Punica granatum HOM05D005991 ORTHO05D007408 6.7e-63 245.0 236 60.6
Medtr4g123060 Medicago truncatula HOM05D005991 ORTHO05D007408 8.7e-63 244.6 227 63.9
MSTRG.22639 Avicennia marina HOM05D005991 ORTHO05D007408 1.9e-62 243.4 258 60.9
Lj9A696T49 Lonicera japonica HOM05D005991 ORTHO05D007408 4.3e-62 242.3 258 58.1
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 4.3e-62 242.3 266 58.3
arahy.Tifrunner.gnm1.ann1.ELD4MI Arachis hypogaea HOM05D005991 ORTHO05D007408 5.6e-62 241.9 254 59.4
CiPaw.01G133100 Carya illinoinensis HOM05D005991 ORTHO05D007408 9.6e-62 241.1 202 73.3
Glyma.17G037800 Glycine max HOM05D005991 ORTHO05D007408 9.6e-62 241.1 247 60.3
arahy.Tifrunner.gnm1.ann1.5JMV2K Arachis hypogaea HOM05D005991 ORTHO05D007408 1.3e-61 240.7 248 60.1
Sc23g0006090 Simmondsia chinensis HOM05D005991 ORTHO05D007408 1.3e-61 240.7 256 60.9
Phvul.003G118700 Phaseolus vulgaris HOM05D005991 ORTHO05D007408 1.6e-61 240.4 248 60.5
Actinidia18486 Actinidia chinensis HOM05D005991 ORTHO05D007408 2.8e-61 239.6 270 58.5
Manes.03G209000 Manihot esculenta HOM05D005991 ORTHO05D007408 2.8e-61 239.6 257 60.3
CANSAT78G1707 Cannabis sativa HOM05D005991 ORTHO05D007408 8.1e-61 238.0 269 64.7
arahy.Tifrunner.gnm1.ann1.KWD76U Arachis hypogaea HOM05D005991 ORTHO05D007408 1.4e-60 237.3 248 65.3
Cc10_g13510 Coffea canephora HOM05D005991 ORTHO05D007408 4.0e-60 235.7 258 65.1
DCAR_019078 Daucus carota HOM05D005991 ORTHO05D007408 9.0e-60 234.6 259 57.9
Os01g0328500 Oryza sativa ssp. japonica HOM05D005991 ORTHO05D007408 1.2e-59 234.2 269 53.5
Cpa.g.sc146.66 Carica papaya HOM05D005991 ORTHO05D007408 2.0e-59 233.4 246 60.2
ATR0693G149 Amborella trichopoda HOM05D005991 ORTHO05D007408 5.8e-59 231.9 266 61.7
Ciclev10005452m.g Citrus clementina HOM05D005991 ORTHO05D007408 7.6e-59 231.5 250 59.2
Cc00_g31090 Coffea canephora HOM05D005991 ORTHO05D007408 2.2e-58 229.9 259 64.5
Nitab4.5_0003374g0080 Nicotiana tabacum HOM05D005991 ORTHO05D007408 2.2e-58 229.9 263 59.3
MD16G1145900 Malus domestica HOM05D005991 ORTHO05D007408 3.2e-57 226.1 225 62.2
Zm00001eb131050 Zea mays HOM05D005991 ORTHO05D007408 3.2e-57 226.1 229 59.8
unitig_32.g11589 Utricularia gibba HOM05D005991 ORTHO05D007408 4.2e-57 225.7 264 55.3
Nitab4.5_0013885g0020 Nicotiana tabacum HOM05D005991 ORTHO05D007408 7.1e-57 224.9 263 54.8
THA.LOC104827106 Tarenaya hassleriana HOM05D005991 ORTHO05D007408 7.1e-57 224.9 229 59.0
Ah.11g042100 Amaranthus hybridus HOM05D005991 ORTHO05D007408 1.2e-56 224.2 236 58.9
PGSC0003DMG400030844 Solanum tuberosum HOM05D005991 ORTHO05D007408 1.2e-56 224.2 263 55.1
Sopen04g029760 Solanum pennellii HOM05D005991 ORTHO05D007408 4.6e-56 222.2 259 56.8
PSO017G0870 Papaver somniferum HOM05D005991 ORTHO05D007408 6.0e-56 221.9 260 59.6
Lsat_1_v5_gn_4_27741 Lactuca sativa HOM05D005991 ORTHO05D007408 1.3e-53 214.2 248 53.2
CAN.G1173.8 Capsicum annuum HOM05D005991 ORTHO05D007408 1.6e-53 213.8 263 54.8
Zm00001eb340570 Zea mays HOM05D005991 ORTHO05D007408 2.1e-53 213.4 217 61.3
ECA234G0222 Erigeron canadensis HOM05D005991 ORTHO05D007408 4.8e-53 212.2 253 54.5
HanXRQChr16g0526201 Helianthus annuus HOM05D005991 ORTHO05D007408 4.8e-53 212.2 254 54.3
PSO675G8194 Papaver somniferum HOM05D005991 ORTHO05D007408 4.8e-53 212.2 260 57.7
Aa31LG11G8380 Aethionema arabicum HOM05D005991 ORTHO05D007408 8.2e-53 211.5 228 57.5
Solyc04g074800.3 Solanum lycopersicum HOM05D005991 ORTHO05D007408 1.8e-52 210.3 266 53.8
A09p05050 Brassica napus HOM05D005991 ORTHO05D007408 2.4e-52 209.9 232 55.6
BraA09t36144Z Brassica rapa HOM05D005991 ORTHO05D007408 2.4e-52 209.9 232 55.6
Peaxi162Scf00139g00312 Petunia axillaris HOM05D005991 ORTHO05D007408 5.3e-52 208.8 256 56.2
BcaB04g19640 Brassica carinata HOM05D005991 ORTHO05D007408 6.9e-52 208.4 232 54.3
Sp2g19950 Schrenkiella parvula HOM05D005991 ORTHO05D007408 2.0e-51 206.8 236 54.2
HPP92_017296 Vanilla planifolia HOM05D005991 ORTHO05D007408 1.3e-50 204.1 233 57.1
AL6G41020 Arabidopsis lyrata HOM05D005991 ORTHO05D007408 1.7e-50 203.8 237 53.2
BcaNung02118 Brassica carinata HOM05D005991 ORTHO05D007408 3.2e-49 199.5 243 53.9
C07p40040 Brassica napus HOM05D005991 ORTHO05D007408 3.2e-49 199.5 243 53.9
Carub.0020s0004 Capsella rubella HOM05D005991 ORTHO05D007408 5.5e-49 198.7 229 53.3
Sp6g09550 Schrenkiella parvula HOM05D005991 ORTHO05D007408 5.5e-49 198.7 236 54.2
AT5G30490 Arabidopsis thaliana HOM05D005991 ORTHO05D007408 7.2e-49 198.4 237 54.0
BolC7t44538H Brassica oleracea HOM05D005991 ORTHO05D007408 7.2e-49 198.4 243 53.9
BraA06t26732Z Brassica rapa HOM05D005991 ORTHO05D007408 1.6e-48 197.2 232 55.6
A06p38170 Brassica napus HOM05D005991 ORTHO05D007408 4.6e-48 195.7 232 55.2
C09p05460 Brassica napus HOM05D005991 ORTHO05D007408 6.1e-48 195.3 226 56.2
Thhalv10004825m.g Eutrema salsugineum HOM05D005991 ORTHO05D007408 6.1e-48 195.3 240 57.1
BcaC04g23714 Brassica carinata HOM05D005991 ORTHO05D007408 1.1e-46 191.0 224 54.0
CARHR185530 Cardamine hirsuta HOM05D005991 ORTHO05D007408 1.3e-45 187.6 240 51.7
COL.COLO4_34551 Corchorus olitorius HOM05D005991 ORTHO05D007408 1.6e-45 187.2 164 69.5
BcaC06g30693 Brassica carinata HOM05D005991 ORTHO05D007408 6.3e-45 185.3 234 57.7
BolC9t53475H Brassica oleracea HOM05D005991 ORTHO05D007408 1.1e-44 184.5 250 50.8
AUR62020284 Chenopodium quinoa HOM05D005991 ORTHO05D007408 2.5e-41 173.3 256 48.4
AUR62037721 Chenopodium quinoa HOM05D005991 ORTHO05D007408 5.5e-41 172.2 259 47.9
PGR119G0116 Punica granatum HOM05D005991 ORTHO05D007408 3.0e-39 166.4 122 75.4
SEGI_07358 Sequoiadendron giganteum HOM05D005991 ORTHO05D007408 8.8e-39 164.9 245 44.9
arahy.Tifrunner.gnm1.ann1.FWR109 Arachis hypogaea HOM05D005991 ORTHO05D007408 9.4e-33 144.8 120 72.5
Mapoly0030s0047 Marchantia polymorpha HOM05D005991 ORTHO05D007408 2.3e-31 140.2 273 38.5
CDE05G0304 Ceratophyllum demersum HOM05D005991 ORTHO05D007408 1.1e-28 131.3 168 54.8
CSS0020858 Camellia sinensis var. sinensis HOM05D005991 ORTHO05D007408 1.7e-26 124.0 128 57.8
SMO203G0019 Selaginella moellendorffii HOM05D005991 ORTHO05D007408 8.0e-24 115.2 232 38.4
CBR_g56129 Chara braunii HOM05D005991 ORTHO05D007408 1.0e-23 114.8 121 52.1
AagrBONN_evm.TU.Sc2ySwM_117.1275 Anthoceros agrestis HOM05D005991 ORTHO05D007408 2.3e-23 113.6 119 58.8
Pp3c5_15500 Physcomitrium patens HOM05D005991 ORTHO05D007408 2.6e-22 110.2 252 32.1
Cre14.g632600 Chlamydomonas reinhardtii HOM05D005991 ORTHO05D007408 7.0e-20 102.1 163 41.7
Actinidia31584 Actinidia chinensis HOM05D005991 ORTHO05D007408 7.5e-14 82.0 217 39.2
MCO08G234 Micromonas commoda HOM05D005991 ORTHO05D007408 6.3e-13 79.0 121 44.6
Sabra10G0116500 Salix brachista HOM05D005991 ORTHO05D007408 7.2e-09 65.5 106 43.4
AL1G65220 Arabidopsis lyrata HOM05D005991 ORTHO05D007408 3.6e-08 63.2 52 65.4
GSVIVG01017610001 Vitis vinifera HOM05D005991 ORTHO05D007408 6.1e-08 62.4 135 40.7
PRCOL_00003370 Prasinoderma coloniale HOM05D005991 ORTHO05D007408 2.3e-07 60.5 124 36.3
GSVIVG01017622001 Vitis vinifera HOM05D005991 ORTHO05D007408 5.2e-07 59.3 70 50.0


User provided reference genes

Program Settings