Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p012138 Quercus lobata HOM05D008160 ORTHO05D009635 9.3e-72 273.5 142 100.0
QL08p033125 Quercus lobata HOM05D008160 ORTHO05D009635 9.3e-72 273.5 142 100.0
CiPaw.04G116300 Carya illinoinensis HOM05D008160 ORTHO05D009635 1.4e-30 136.7 150 58.7
CiPaw.03G160200 Carya illinoinensis HOM05D008160 ORTHO05D009635 5.7e-29 131.3 151 57.6
Thecc.02G314100 Theobroma cacao HOM05D008160 ORTHO05D009635 7.5e-29 131.0 148 52.7
Dinv05432 Davidia involucrata HOM05D008160 ORTHO05D009635 4.5e-26 121.7 131 55.0
TAR624G1256 Trochodendron aralioides HOM05D008160 ORTHO05D009635 6.5e-25 117.9 146 50.0
Cfa014402 Carpinus fangiana HOM05D008160 ORTHO05D009635 4.2e-24 115.2 158 51.3
Haze_12867 Corylus avellana HOM05D008160 ORTHO05D009635 9.4e-24 114.0 96 67.7
Glyma.06G305400 Glycine max HOM05D008160 ORTHO05D009635 1.2e-23 113.6 149 49.7
TWI75G1754 Tripterygium wilfordii HOM05D008160 ORTHO05D009635 1.6e-23 113.2 142 47.9
Prupe.3G217400 Prunus persica HOM05D008160 ORTHO05D009635 3.4e-21 105.5 146 49.3
TWI36G0727 Tripterygium wilfordii HOM05D008160 ORTHO05D009635 3.4e-21 105.5 142 49.3
MD09G1108700 Malus domestica HOM05D008160 ORTHO05D009635 2.8e-20 102.4 146 44.5
Lj3g0006762 Lotus japonicus HOM05D008160 ORTHO05D009635 1.8e-19 99.8 146 49.3
COL.COLO4_27706 Corchorus olitorius HOM05D008160 ORTHO05D009635 2.4e-19 99.4 152 47.4
TAR626G0785 Trochodendron aralioides HOM05D008160 ORTHO05D009635 3.1e-19 99.0 147 45.6
FvH4_6g43200 Fragaria vesca HOM05D008160 ORTHO05D009635 5.0e-17 91.7 156 44.2
CANSAT64G2131 Cannabis sativa HOM05D008160 ORTHO05D009635 6.5e-17 91.3 163 42.3
Gorai.005G149800 Gossypium raimondii HOM05D008160 ORTHO05D009635 1.1e-16 90.5 161 42.2
Gohir.D02G133900 Gossypium hirsutum HOM05D008160 ORTHO05D009635 1.5e-16 90.1 162 42.0
Potri.002G229300 Populus trichocarpa HOM05D008160 ORTHO05D009635 1.9e-16 89.7 148 41.2
Psat7g157360 Pisum sativum HOM05D008160 ORTHO05D009635 2.5e-16 89.4 143 42.7
FAN09G3148 Fragaria x ananassa HOM05D008160 ORTHO05D009635 4.2e-16 88.6 156 43.6
Lalb_Chr03g0028751 Lupinus albus HOM05D008160 ORTHO05D009635 4.2e-16 88.6 127 44.1
TPR.G4649 Trifolium pratense HOM05D008160 ORTHO05D009635 4.2e-16 88.6 144 44.4
FAN02G3260 Fragaria x ananassa HOM05D008160 ORTHO05D009635 7.2e-16 87.8 156 42.9
Gohir.D13G088500 Gossypium hirsutum HOM05D008160 ORTHO05D009635 1.2e-15 87.0 144 41.0
Glyma.12G099100 Glycine max HOM05D008160 ORTHO05D009635 1.6e-15 86.7 146 43.2
Gohir.A03G108800 Gossypium hirsutum HOM05D008160 ORTHO05D009635 2.1e-15 86.3 161 39.8
Potri.014G153200 Populus trichocarpa HOM05D008160 ORTHO05D009635 3.6e-15 85.5 150 42.0
Hma1.2p1_0328F.1_g126920 Hydrangea macrophylla HOM05D008160 ORTHO05D009635 1.0e-14 84.0 74 66.2
Gohir.A13G094500 Gossypium hirsutum HOM05D008160 ORTHO05D009635 1.4e-14 83.6 144 42.4
Gorai.013G101200 Gossypium raimondii HOM05D008160 ORTHO05D009635 1.4e-14 83.6 143 41.3
Eucgr.A01130 Eucalyptus grandis HOM05D008160 ORTHO05D009635 4.0e-14 82.0 148 45.3
FAN10G1253 Fragaria x ananassa HOM05D008160 ORTHO05D009635 1.2e-13 80.5 156 41.0
FAN14G2424 Fragaria x ananassa HOM05D008160 ORTHO05D009635 1.2e-13 80.5 156 41.0
ClCG02G008690 Citrullus lanatus HOM05D008160 ORTHO05D009635 1.5e-13 80.1 144 41.0
Phvul.011G104000 Phaseolus vulgaris HOM05D008160 ORTHO05D009635 1.5e-13 80.1 143 40.6
Sabra02G0175400 Salix brachista HOM05D008160 ORTHO05D009635 1.5e-13 80.1 156 39.7
VMungo1127G0429 Vigna mungo HOM05D008160 ORTHO05D009635 2.0e-13 79.7 145 40.0
Manes.12G074700 Manihot esculenta HOM05D008160 ORTHO05D009635 4.4e-13 78.6 143 38.5
Nn1g03539 Nelumbo nucifera HOM05D008160 ORTHO05D009635 4.4e-13 78.6 145 40.7
Lalb_Chr19g0135851 Lupinus albus HOM05D008160 ORTHO05D009635 5.7e-13 78.2 152 40.1
Ca_26933_v3 Cicer arietinum L. HOM05D008160 ORTHO05D009635 1.3e-12 77.0 145 42.8
Ciclev10017235m.g Citrus clementina HOM05D008160 ORTHO05D009635 1.3e-12 77.0 83 53.0
RcHm_v2.0_Chr2g0159421 Rosa chinensis HOM05D008160 ORTHO05D009635 3.7e-12 75.5 151 39.1
Ca_01599_v3 Cicer arietinum L. HOM05D008160 ORTHO05D009635 4.9e-12 75.1 139 37.4
Glyma.13G308600 Glycine max HOM05D008160 ORTHO05D009635 6.3e-12 74.7 140 41.4
Carub.0003s2173 Capsella rubella HOM05D010757 ORTHO05D009635 8.3e-12 74.3 141 41.1
CARHR097620 Cardamine hirsuta HOM05D010757 ORTHO05D009635 1.4e-11 73.6 92 45.7
RcHm_v2.0_Chr2g0159311 Rosa chinensis HOM05D008160 ORTHO05D009635 1.4e-11 73.6 151 38.4
AL3G35800 Arabidopsis lyrata HOM05D010757 ORTHO05D009635 2.4e-11 72.8 93 49.5
TPR.G4242 Trifolium pratense HOM05D008160 ORTHO05D009635 2.4e-11 72.8 150 33.3
CsaV3_2G034970 Cucumis sativus L. HOM05D008160 ORTHO05D009635 3.1e-11 72.4 149 40.3
Medtr4g048060 Medicago truncatula HOM05D008160 ORTHO05D009635 1.2e-10 70.5 148 40.5
Glyma.12G193900 Glycine max HOM05D008160 ORTHO05D009635 2.0e-10 69.7 140 38.6
MELO3C019266.2 Cucumis melo HOM05D008160 ORTHO05D009635 2.7e-10 69.3 150 39.3
Aqoxy1G02167 Aquilegia oxysepala HOM05D034144 ORTHO05D009635 3.5e-10 68.9 128 37.5
Sp3g19690 Schrenkiella parvula HOM05D010757 ORTHO05D009635 3.5e-10 68.9 143 37.8
AT3G21680 Arabidopsis thaliana HOM05D010757 ORTHO05D009635 4.5e-10 68.6 93 48.4
LjContig00412g0003580 Lotus japonicus HOM05D008160 ORTHO05D009635 5.9e-10 68.2 145 35.2
Thhalv10022045m.g Eutrema salsugineum HOM05D010757 ORTHO05D009635 1.0e-09 67.4 144 37.5
Thecc.02G314300 Theobroma cacao HOM05D008160 ORTHO05D009635 1.7e-09 66.6 150 34.7
Aqoxy1G02168 Aquilegia oxysepala HOM05D034144 ORTHO05D009635 2.9e-09 65.9 151 36.4
A01p33300 Brassica napus HOM05D010757 ORTHO05D009635 3.8e-09 65.5 80 46.2
Rhsim04G0053300 Rhododendron simsii HOM05D000003 ORTHO05D000006 3.8e-09 65.5 76 56.6
arahy.Tifrunner.gnm1.ann1.MX58RG Arachis hypogaea HOM05D008160 ORTHO05D009635 5.0e-09 65.1 87 43.7
C01p42560 Brassica napus HOM05D010757 ORTHO05D009635 5.0e-09 65.1 80 46.2
BolC1t04209H Brassica oleracea HOM05D010757 ORTHO05D009635 5.0e-09 65.1 80 46.2
BraA01t03447Z Brassica rapa HOM05D010757 ORTHO05D009635 5.0e-09 65.1 80 46.2
BraA01t03448Z Brassica rapa HOM05D010757 ORTHO05D009635 5.0e-09 65.1 80 46.2
Cpa.g.sc8.214 Carica papaya HOM05D008160 ORTHO05D009635 5.0e-09 65.1 150 34.0
ECA240G4605 Erigeron canadensis HOM05D043945 ORTHO05D045223 1.5e-08 63.5 152 38.2
Atru.chr6.3179 Acer truncatum HOM05D008160 ORTHO05D009635 1.9e-08 63.2 90 52.2
BcaB04g20576 Brassica carinata HOM05D010757 ORTHO05D009635 4.3e-08 62.0 89 42.7
PGR042G1178 Punica granatum HOM05D008160 ORTHO05D009635 7.3e-08 61.2 142 38.0
Thhalv10026860m.g Eutrema salsugineum HOM05D010757 ORTHO05D009635 1.2e-07 60.5 92 39.1
PSO541G0116 Papaver somniferum HOM05D067469 ORTHO05D009635 2.1e-07 59.7 159 34.0
Sp7g13570 Schrenkiella parvula HOM05D010757 ORTHO05D009635 2.8e-07 59.3 147 35.4
Sed0017088 Sechium edule HOM05D008160 ORTHO05D009635 6.1e-07 58.2 151 34.4
C03p51830 Brassica napus HOM05D010757 ORTHO05D009635 8.0e-07 57.8 144 35.4
Medtr2g088370 Medicago truncatula HOM05D008160 ORTHO05D009635 8.0e-07 57.8 145 31.7
PSO675G3123 Papaver somniferum HOM05D067469 ORTHO05D009635 1.0e-06 57.4 161 32.3
ATR0752G071 Amborella trichopoda HOM05D008160 ORTHO05D009635 1.8e-06 56.6 177 27.1
BcaC01g03493 Brassica carinata HOM05D010757 ORTHO05D009635 4.0e-06 55.5 77 42.9


User provided reference genes

Program Settings