Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p011667 Quercus lobata HOM05D001388 ORTHO05D001234 1.7e-32 142.1 75 100.0
QL09p004813 Quercus lobata HOM05D001388 ORTHO05D001234 5.0e-16 87.4 67 76.1
Haze_13908 Corylus avellana HOM05D001388 ORTHO05D001234 3.2e-15 84.7 57 82.5
CiPaw.03G018800 Carya illinoinensis HOM05D001388 ORTHO05D001234 7.2e-15 83.6 67 71.6
vmacro00938 Vaccinium macrocarpon HOM05D001388 ORTHO05D001234 1.6e-14 82.4 70 67.1
Dinv41791 Davidia involucrata HOM05D001388 ORTHO05D001234 2.7e-14 81.6 70 67.1
Hma1.2p1_0004F.1_g003870 Hydrangea macrophylla HOM05D001388 ORTHO05D001234 3.0e-13 78.2 70 64.3
Gohir.A13G117700 Gossypium hirsutum HOM05D001388 ORTHO05D001234 5.2e-13 77.4 68 67.6
CSS0026347 Camellia sinensis var. sinensis HOM05D001388 ORTHO05D001234 6.8e-13 77.0 70 62.9
Sed0023095 Sechium edule HOM05D001388 ORTHO05D001234 6.8e-13 77.0 67 68.7
Actinidia07845 Actinidia chinensis HOM05D001388 ORTHO05D001234 8.8e-13 76.6 73 63.0
CiPaw.04G012600 Carya illinoinensis HOM05D001388 ORTHO05D001234 8.8e-13 76.6 73 61.6
Rhsim12G0003100 Rhododendron simsii HOM05D001388 ORTHO05D001234 8.8e-13 76.6 68 64.7
Gohir.D13G120900 Gossypium hirsutum HOM05D001388 ORTHO05D001234 1.2e-12 76.3 68 66.2
Gorai.013G135100 Gossypium raimondii HOM05D001388 ORTHO05D001234 1.2e-12 76.3 68 66.2
COL.COLO4_24637 Corchorus olitorius HOM05D001388 ORTHO05D001234 2.0e-12 75.5 68 64.7
Glyma.12G000700 Glycine max HOM05D001388 ORTHO05D001234 2.6e-12 75.1 67 67.2
MELO3C005230.2 Cucumis melo HOM05D001388 ORTHO05D001234 3.4e-12 74.7 67 64.2
Hma1.2p1_0647F.1_g195040 Hydrangea macrophylla HOM05D001388 ORTHO05D001234 3.4e-12 74.7 70 60.0
Migut.C01332 Erythranthe guttata HOM05D001388 ORTHO05D001234 5.7e-12 73.9 70 62.9
MBI06_g06698_MAGBIO Magnolia biondii HOM05D001388 ORTHO05D001234 5.7e-12 73.9 70 61.4
Lj7A626T77 Lonicera japonica HOM05D001388 ORTHO05D001234 7.5e-12 73.6 70 62.9
MSTRG.25480 Avicennia marina HOM05D001388 ORTHO05D001234 9.7e-12 73.2 70 62.9
HanXRQChr05g0134581 Helianthus annuus HOM05D001388 ORTHO05D001234 9.7e-12 73.2 70 60.0
HanXRQChr05g0134591 Helianthus annuus HOM05D001388 ORTHO05D001234 9.7e-12 73.2 70 60.0
CsaV3_5G017230 Cucumis sativus L. HOM05D001388 ORTHO05D001234 1.7e-11 72.4 67 61.2
ClCG11G008730 Citrullus lanatus HOM05D001388 ORTHO05D001234 2.2e-11 72.0 67 64.2
SGA_v2.0_scaffold19G08932 Striga asiatica HOM05D001388 ORTHO05D001234 2.2e-11 72.0 70 60.0
Eucgr.F02982 Eucalyptus grandis HOM05D001388 ORTHO05D001234 2.8e-11 71.6 69 63.8
TPR.G34102 Trifolium pratense HOM05D001388 ORTHO05D001234 2.8e-11 71.6 67 59.7
Manes.05G114300 Manihot esculenta HOM05D001388 ORTHO05D001234 3.7e-11 71.2 69 60.9
Sc07g0009470 Simmondsia chinensis HOM05D001388 ORTHO05D001234 3.7e-11 71.2 70 60.0
Duzib211G0308 Durio zibethinus HOM05D001388 ORTHO05D001234 4.8e-11 70.9 68 60.3
Glyma.08G238000 Glycine max HOM05D001388 ORTHO05D001234 6.3e-11 70.5 67 65.7
Atru.chr13.2296 Acer truncatum HOM05D001388 ORTHO05D001234 1.1e-10 69.7 69 62.3
ECA246G0461 Erigeron canadensis HOM05D001388 ORTHO05D001234 1.1e-10 69.7 70 57.1
GSVIVG01025947001 Vitis vinifera HOM05D001388 ORTHO05D001234 1.4e-10 69.3 70 57.1
Ciclev10024527m.g Citrus clementina HOM05D001388 ORTHO05D001234 4.1e-10 67.8 64 56.2
Phvul.011G000400 Phaseolus vulgaris HOM05D001388 ORTHO05D001234 4.1e-10 67.8 67 59.7
vmacro00939 Vaccinium macrocarpon HOM05D001388 ORTHO05D001234 5.3e-10 67.4 54 66.7
Cc10_g09430 Coffea canephora HOM05D001388 ORTHO05D001234 7.0e-10 67.0 70 57.1
DCAR_004331 Daucus carota HOM05D001388 ORTHO05D001234 7.0e-10 67.0 67 58.2
Aa31LG6G8190 Aethionema arabicum HOM05D001388 ORTHO05D001234 9.1e-10 66.6 68 58.8
Lj3C115G1 Lonicera japonica HOM05D001388 ORTHO05D001234 9.1e-10 66.6 71 57.7
AUR62022365 Chenopodium quinoa HOM05D001388 ORTHO05D001234 1.6e-09 65.9 70 57.1
Lj3A136G5 Lonicera japonica HOM05D001388 ORTHO05D001234 1.6e-09 65.9 72 58.3
Ah.05g168640 Amaranthus hybridus HOM05D001388 ORTHO05D001234 2.0e-09 65.5 70 60.0
Lj3C138T1 Lonicera japonica HOM05D001388 ORTHO05D001234 2.0e-09 65.5 72 58.3
Atru.chr6.116 Acer truncatum HOM05D001388 ORTHO05D001234 2.7e-09 65.1 55 65.5
Lj3C141G1 Lonicera japonica HOM05D001388 ORTHO05D001234 2.7e-09 65.1 70 58.6
TAR381G0841 Trochodendron aralioides HOM05D001388 ORTHO05D001234 3.5e-09 64.7 70 60.0
AUR62034336 Chenopodium quinoa HOM05D001388 ORTHO05D001234 4.5e-09 64.3 70 55.7
Thhalv10007891m.g Eutrema salsugineum HOM05D001388 ORTHO05D001234 4.5e-09 64.3 74 51.4
arahy.Tifrunner.gnm1.ann1.MV8DP6 Arachis hypogaea HOM05D001388 ORTHO05D001234 5.9e-09 63.9 67 59.7
EL10Ac1g01662 Beta vulgaris HOM05D001388 ORTHO05D001234 5.9e-09 63.9 70 55.7
BcaB03g13686 Brassica carinata HOM05D001388 ORTHO05D001234 5.9e-09 63.9 68 54.4
ClCG01G006840 Citrullus lanatus HOM05D001388 ORTHO05D001234 5.9e-09 63.9 57 66.7
Actinidia01548 Actinidia chinensis HOM05D001388 ORTHO05D001234 1.0e-08 63.2 71 57.7
BcaC05g27791 Brassica carinata HOM05D001388 ORTHO05D001234 1.0e-08 63.2 68 54.4
A05p24180 Brassica napus HOM05D001388 ORTHO05D001234 1.0e-08 63.2 68 54.4
C05p37870 Brassica napus HOM05D001388 ORTHO05D001234 1.0e-08 63.2 68 54.4
BraA05t21297Z Brassica rapa HOM05D001388 ORTHO05D001234 1.0e-08 63.2 68 54.4
TPR.G34180 Trifolium pratense HOM05D001388 ORTHO05D001234 1.0e-08 63.2 63 55.6
BolC5t32520H Brassica oleracea HOM05D001388 ORTHO05D001234 1.3e-08 62.8 68 54.4
Psat7g226720 Pisum sativum HOM05D001388 ORTHO05D001234 1.3e-08 62.8 67 56.7
PGR042G2147 Punica granatum HOM05D001388 ORTHO05D001234 1.3e-08 62.8 55 65.5
VMungo1215G1930 Vigna mungo HOM05D001388 ORTHO05D001234 1.3e-08 62.8 73 52.1
CARHR033350 Cardamine hirsuta HOM05D001388 ORTHO05D001234 1.7e-08 62.4 68 54.4
Potri.019G077300 Populus trichocarpa HOM05D001388 ORTHO05D001234 1.7e-08 62.4 67 59.7
AT1G33970 Arabidopsis thaliana HOM05D001388 ORTHO05D001234 2.2e-08 62.0 68 52.9
TAR628G0884 Trochodendron aralioides HOM05D001388 ORTHO05D001234 3.8e-08 61.2 57 63.2
SalBow6G3179 Salvia bowleyana HOM05D001388 ORTHO05D001234 5.0e-08 60.8 59 61.0
HanXRQChr12g0381371 Helianthus annuus HOM05D001388 ORTHO05D001234 6.5e-08 60.5 57 61.4
Lsat_1_v5_gn_6_111600 Lactuca sativa HOM05D001388 ORTHO05D001234 6.5e-08 60.5 57 61.4
Lj3A138G7 Lonicera japonica HOM05D001388 ORTHO05D001234 6.5e-08 60.5 62 54.8
Lj3A140G7 Lonicera japonica HOM05D001388 ORTHO05D001234 6.5e-08 60.5 55 61.8
Lj3C139T4 Lonicera japonica HOM05D001388 ORTHO05D001234 6.5e-08 60.5 56 60.7
PGR042G1476 Punica granatum HOM05D001388 ORTHO05D001234 6.5e-08 60.5 57 59.6
Lj3A115T17 Lonicera japonica HOM05D001388 ORTHO05D001234 1.5e-07 59.3 55 60.0
Lj3A137T7 Lonicera japonica HOM05D001388 ORTHO05D001234 1.5e-07 59.3 55 60.0
Cfa005444 Carpinus fangiana HOM05D001040 ORTHO05D002311 1.9e-07 58.9 55 60.0
Haze_13909 Corylus avellana HOM05D001388 ORTHO05D001234 1.9e-07 58.9 47 72.3
Medtr4g032300 Medicago truncatula HOM05D001388 ORTHO05D001234 1.9e-07 58.9 67 53.7
Medtr4g032330 Medicago truncatula HOM05D001388 ORTHO05D001234 1.9e-07 58.9 67 53.7
Potri.013G104800 Populus trichocarpa HOM05D001388 ORTHO05D001234 1.9e-07 58.9 67 56.7
Sabra13G0090500 Salix brachista HOM05D001388 ORTHO05D001234 1.9e-07 58.9 67 56.7
Solyc11g028010.2 Solanum lycopersicum HOM05D001388 ORTHO05D001234 1.9e-07 58.9 68 55.9
Sopen11g012480 Solanum pennellii HOM05D001388 ORTHO05D001234 1.9e-07 58.9 68 55.9
THA.LOC104806759 Tarenaya hassleriana HOM05D001388 ORTHO05D001234 1.9e-07 58.9 68 52.9
TWI14G0753 Tripterygium wilfordii HOM05D001388 ORTHO05D001234 1.9e-07 58.9 54 64.8
Medtr4g032350 Medicago truncatula HOM05D001388 ORTHO05D001234 2.5e-07 58.5 55 60.0
Actinidia07847 Actinidia chinensis HOM05D001388 ORTHO05D001234 3.2e-07 58.2 71 54.9
CAN.G194.18 Capsicum annuum HOM05D001388 ORTHO05D001234 3.2e-07 58.2 54 63.0
Nitab4.5_0000016g0470 Nicotiana tabacum HOM05D001388 ORTHO05D001234 3.2e-07 58.2 71 53.5
Sabra19G0088400 Salix brachista HOM05D001388 ORTHO05D001234 4.2e-07 57.8 73 52.1
Ciclev10021509m.g Citrus clementina HOM05D001388 ORTHO05D001234 5.5e-07 57.4 54 61.1
Peaxi162Scf00688g00350 Petunia axillaris HOM05D001388 ORTHO05D001234 9.4e-07 56.6 70 54.3
MD15G1403700 Malus domestica HOM05D001388 ORTHO05D001234 1.6e-06 55.8 53 64.2
PGR042G1394 Punica granatum HOM05D001388 ORTHO05D001234 2.1e-06 55.5 70 52.9
PGSC0003DMG400025528 Solanum tuberosum HOM05D001388 ORTHO05D001234 2.1e-06 55.5 54 59.3
SGA_v2.0_scaffold25G11033 Striga asiatica HOM05D001388 ORTHO05D001234 2.7e-06 55.1 52 57.7
Nitab4.5_0004263g0040 Nicotiana tabacum HOM05D001388 ORTHO05D001234 4.7e-06 54.3 71 52.1
PGR042G1388 Punica granatum HOM05D001388 ORTHO05D001234 4.7e-06 54.3 55 58.2
PGR042G3614 Punica granatum HOM05D001388 ORTHO05D001234 4.7e-06 54.3 55 58.2
arahy.Tifrunner.gnm1.ann1.AES74V Arachis hypogaea HOM05D001388 ORTHO05D001234 8.0e-06 53.5 67 53.7


User provided reference genes

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