Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p010871 Quercus lobata HOM05D005296 ORTHO05D006452 9.8e-172 606.7 301 100.0
Haze_01146 Corylus avellana HOM05D005296 ORTHO05D006452 7.9e-129 464.2 306 79.7
Prupe.1G129900 Prunus persica HOM05D005296 ORTHO05D006452 9.7e-119 430.6 291 75.6
FAN07G1138 Fragaria x ananassa HOM05D005296 ORTHO05D006452 4.8e-118 428.3 304 73.4
FAN17G2193 Fragaria x ananassa HOM05D005296 ORTHO05D006452 6.3e-118 427.9 303 73.3
FvH4_4g18820 Fragaria vesca HOM05D005296 ORTHO05D006452 5.3e-117 424.9 304 72.7
MD16G1162300 Malus domestica HOM05D005296 ORTHO05D006452 1.5e-116 423.3 304 73.4
Manes.15G009300 Manihot esculenta HOM05D005296 ORTHO05D006452 2.0e-116 422.9 310 71.3
arahy.Tifrunner.gnm1.ann1.GJ345V Arachis hypogaea HOM05D005296 ORTHO05D006452 1.0e-115 420.6 303 72.3
RcHm_v2.0_Chr4g0423631 Rosa chinensis HOM05D005296 ORTHO05D006452 1.0e-115 420.6 308 71.8
CiPaw.01G144600 Carya illinoinensis HOM05D005296 ORTHO05D006452 1.3e-115 420.2 250 84.8
TWI09G1158 Tripterygium wilfordii HOM05D005296 ORTHO05D006452 8.5e-115 417.5 298 71.8
Cfa015446 Carpinus fangiana HOM05D005296 ORTHO05D006452 1.4e-114 416.8 238 86.6
PGR031G1375 Punica granatum HOM05D005296 ORTHO05D006452 1.4e-114 416.8 303 72.9
Atru.chr4.2920 Acer truncatum HOM05D005296 ORTHO05D006452 5.5e-114 414.8 281 76.2
Thecc.04G290700 Theobroma cacao HOM05D005296 ORTHO05D006452 7.2e-114 414.5 299 71.6
Cpa.g.sc9.118 Carica papaya HOM05D005296 ORTHO05D006452 9.3e-114 414.1 232 86.2
Gorai.002G028900 Gossypium raimondii HOM05D005296 ORTHO05D006452 9.3e-114 414.1 301 71.1
Potri.010G006000 Populus trichocarpa HOM05D005296 ORTHO05D006452 1.6e-113 413.3 267 78.7
Glyma.15G152600 Glycine max HOM05D005296 ORTHO05D006452 4.6e-113 411.8 285 74.4
Gohir.A01G033200 Gossypium hirsutum HOM05D005296 ORTHO05D006452 4.6e-113 411.8 301 70.4
THA.LOC104821787 Tarenaya hassleriana HOM05D005296 ORTHO05D006452 4.6e-113 411.8 307 71.3
Phvul.009G251800 Phaseolus vulgaris HOM05D005296 ORTHO05D006452 7.9e-113 411.0 303 71.3
Gohir.D01G023502 Gossypium hirsutum HOM05D005296 ORTHO05D006452 1.0e-112 410.6 298 70.8
Lalb_Chr15g0089391 Lupinus albus HOM05D005296 ORTHO05D006452 1.4e-112 410.2 306 70.3
Sabra10G0005100 Salix brachista HOM05D005296 ORTHO05D006452 1.4e-112 410.2 268 77.6
GSVIVG01035092001 Vitis vinifera HOM05D005296 ORTHO05D006452 8.8e-112 407.5 235 85.1
vmacro08101 Vaccinium macrocarpon HOM05D005296 ORTHO05D006452 1.5e-111 406.8 279 74.2
Aa31LG10G6140 Aethionema arabicum HOM05D005296 ORTHO05D006452 2.5e-111 406.0 262 76.3
Eucgr.A01317 Eucalyptus grandis HOM05D005296 ORTHO05D006452 3.3e-111 405.6 256 78.1
Ca_01907_v3 Cicer arietinum L. HOM05D005296 ORTHO05D006452 2.8e-110 402.5 232 83.2
Hma1.2p1_1352F.1_g277550 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 2.8e-110 402.5 268 74.6
Sc13g0006220 Simmondsia chinensis HOM05D005296 ORTHO05D006452 2.8e-110 402.5 299 70.9
Lj6g0024924 Lotus japonicus HOM05D005296 ORTHO05D006452 6.3e-110 401.4 263 74.5
TPR.G24643 Trifolium pratense HOM05D005296 ORTHO05D006452 6.3e-110 401.4 232 82.8
Sopen12g034070 Solanum pennellii HOM05D005296 ORTHO05D006452 3.1e-109 399.1 301 69.8
AL7G39130 Arabidopsis lyrata HOM05D005296 ORTHO05D006452 4.1e-109 398.7 302 67.9
Sp7g14530 Schrenkiella parvula HOM05D005296 ORTHO05D006452 5.3e-109 398.3 273 71.8
Carub.0007s2556 Capsella rubella HOM05D005296 ORTHO05D006452 6.9e-109 397.9 296 69.9
A03p49510 Brassica napus HOM05D005296 ORTHO05D006452 9.1e-109 397.5 305 68.2
Ciclev10005508m.g Citrus clementina HOM05D005296 ORTHO05D006452 1.2e-108 397.1 276 76.1
Psat1g156080 Pisum sativum HOM05D005296 ORTHO05D006452 1.2e-108 397.1 280 70.4
Solyc12g099400.2 Solanum lycopersicum HOM05D005296 ORTHO05D006452 1.2e-108 397.1 309 68.3
AUR62035079 Chenopodium quinoa HOM05D005296 ORTHO05D006452 1.5e-108 396.7 227 83.3
AT4G16060 Arabidopsis thaliana HOM05D005296 ORTHO05D006452 5.9e-108 394.8 266 73.3
Medtr2g435540 Medicago truncatula HOM05D005296 ORTHO05D006452 5.9e-108 394.8 232 81.9
VMungo1309G1137 Vigna mungo HOM05D005296 ORTHO05D006452 5.9e-108 394.8 283 72.1
GSVIVG01035093001 Vitis vinifera HOM05D005296 ORTHO05D006452 1.3e-107 393.7 233 81.5
BcaC06g32977 Brassica carinata HOM05D005296 ORTHO05D006452 2.9e-107 392.5 302 69.5
AUR62016165 Chenopodium quinoa HOM05D005296 ORTHO05D006452 5.0e-107 391.7 278 70.5
SGA_v2.0_scaffold91G28037 Striga asiatica HOM05D005296 ORTHO05D006452 6.5e-107 391.3 269 73.6
BcaC06g33432 Brassica carinata HOM05D005296 ORTHO05D006452 8.5e-107 391.0 303 68.0
CARHR290680 Cardamine hirsuta HOM05D005296 ORTHO05D006452 8.5e-107 391.0 299 67.9
BolC7t45282H Brassica oleracea HOM05D005296 ORTHO05D006452 1.1e-106 390.6 300 68.0
C07p47580 Brassica napus HOM05D005296 ORTHO05D006452 1.9e-106 389.8 263 72.2
Aqoxy5G00802 Aquilegia oxysepala HOM05D005296 ORTHO05D006452 2.5e-106 389.4 314 66.2
CAN.G484.51 Capsicum annuum HOM05D005296 ORTHO05D006452 2.5e-106 389.4 287 69.7
Thhalv10025823m.g Eutrema salsugineum HOM05D005296 ORTHO05D006452 2.5e-106 389.4 307 66.1
PGSC0003DMG400004702 Solanum tuberosum HOM05D005296 ORTHO05D006452 4.2e-106 388.7 256 73.0
SGA_v2.0_scaffold119G32698 Striga asiatica HOM05D005296 ORTHO05D006452 4.2e-106 388.7 232 80.2
BcaC06g33433 Brassica carinata HOM05D005296 ORTHO05D006452 7.2e-106 387.9 263 72.2
MELO3C021302.2 Cucumis melo HOM05D005296 ORTHO05D006452 9.4e-106 387.5 269 71.7
CsaV3_6G022690 Cucumis sativus L. HOM05D005296 ORTHO05D006452 3.6e-105 385.6 233 77.7
HanXRQChr03g0083871 Helianthus annuus HOM05D005296 ORTHO05D006452 4.7e-105 385.2 310 64.8
Sed0027436 Sechium edule HOM05D005296 ORTHO05D006452 3.0e-104 382.5 265 71.3
Cc03_g01400 Coffea canephora HOM05D005296 ORTHO05D006452 3.9e-104 382.1 232 78.4
Lj3A826T78 Lonicera japonica HOM05D005296 ORTHO05D006452 3.9e-104 382.1 311 65.9
TAR633G2374 Trochodendron aralioides HOM05D005296 ORTHO05D006452 5.1e-104 381.7 232 79.3
ECA240G3796 Erigeron canadensis HOM05D002249 ORTHO05D000452 1.1e-103 380.6 236 77.5
BraA03t14050Z Brassica rapa HOM05D005296 ORTHO05D006452 3.3e-103 379.0 310 65.8
MBI19_g08248_MAGBIO Magnolia biondii HOM05D005296 ORTHO05D006452 7.4e-103 377.9 261 70.1
Oeu033815.1 Olea europaea HOM05D005296 ORTHO05D006452 7.4e-103 377.9 242 76.9
C07p47550 Brassica napus HOM05D005296 ORTHO05D006452 9.7e-103 377.5 284 67.3
Oeu028323.1 Olea europaea HOM05D005296 ORTHO05D006452 9.7e-103 377.5 242 76.0
CsaV3_6G022680 Cucumis sativus L. HOM05D005296 ORTHO05D006452 1.7e-102 376.7 233 76.8
PSO832G0676 Papaver somniferum HOM05D005296 ORTHO05D006452 6.3e-102 374.8 251 73.7
MSTRG.24808 Avicennia marina HOM05D005296 ORTHO05D006452 3.1e-101 372.5 283 68.6
unitig_22.g6340 Utricularia gibba HOM05D005296 ORTHO05D006452 3.1e-101 372.5 271 68.6
Migut.N00068 Erythranthe guttata HOM05D005296 ORTHO05D006452 4.1e-101 372.1 295 66.4
Dinv29712 Davidia involucrata HOM05D005296 ORTHO05D000287 6.9e-101 371.3 270 72.2
Peaxi162Scf03294g00016 Petunia axillaris HOM05D005296 ORTHO05D006452 7.7e-100 367.9 232 78.0
Nitab4.5_0003484g0020 Nicotiana tabacum HOM05D005296 ORTHO05D006452 1.0e-99 367.5 270 69.3
Actinidia40306 Actinidia chinensis HOM05D005296 ORTHO05D006452 2.2e-99 366.3 250 74.4
Nn3g21572 Nelumbo nucifera HOM05D005296 ORTHO05D006452 6.5e-99 364.8 254 73.6
CsaV3_6G022700 Cucumis sativus L. HOM05D005296 ORTHO05D006452 1.4e-98 363.6 232 73.3
Rhsim04G0228000 Rhododendron simsii HOM05D005296 ORTHO05D006452 3.2e-98 362.5 318 62.6
Nitab4.5_0000570g0290 Nicotiana tabacum HOM05D005296 ORTHO05D006452 3.6e-97 359.0 232 75.4
Os05g0358400 Oryza sativa ssp. japonica HOM05D005296 ORTHO05D006452 2.3e-96 356.3 288 65.6
SEGI_03423 Sequoiadendron giganteum HOM05D005296 ORTHO05D006452 5.2e-96 355.1 235 74.0
Zm00001eb346400 Zea mays HOM05D005296 ORTHO05D006452 8.8e-96 354.4 256 68.4
arahy.Tifrunner.gnm1.ann1.28UQCP Arachis hypogaea HOM05D005296 ORTHO05D006452 5.7e-95 351.7 233 70.0
arahy.Tifrunner.gnm1.ann1.5R3I64 Arachis hypogaea HOM05D005296 ORTHO05D006452 2.2e-94 349.7 233 69.5
SalBow5G1780 Salvia bowleyana HOM05D005296 ORTHO05D006452 1.6e-92 343.6 315 61.3
FAN12G2682 Fragaria x ananassa HOM05D005296 ORTHO05D006452 2.2e-91 339.7 310 63.2
ATR0730G096 Amborella trichopoda HOM05D005296 ORTHO05D006452 3.8e-91 339.0 232 69.8
VMungo1215G1937 Vigna mungo HOM05D005296 ORTHO05D006452 3.8e-91 339.0 247 65.6
ATR1131G025 Amborella trichopoda HOM05D005296 ORTHO05D006452 1.5e-90 337.0 233 68.7
Lalb_Chr07g0182261 Lupinus albus HOM05D005296 ORTHO05D006452 2.5e-90 336.3 233 67.8
Glyma.07G244600 Glycine max HOM05D005296 ORTHO05D006452 7.2e-90 334.7 235 66.8
Duzib151G0219 Durio zibethinus HOM05D005296 ORTHO05D006452 5.2e-88 328.6 299 59.2
Ca_21474_v3 Cicer arietinum L. HOM05D005296 ORTHO05D006452 1.5e-87 327.0 218 70.6
Pp3c24_6150 Physcomitrium patens HOM05D005296 ORTHO05D006452 1.5e-87 327.0 242 64.9
Psat4g024760 Pisum sativum HOM05D005296 ORTHO05D006452 5.7e-87 325.1 218 69.3
Medtr4g120420 Medicago truncatula HOM05D005296 ORTHO05D006452 9.7e-87 324.3 218 69.3
Phvul.003G108300 Phaseolus vulgaris HOM05D005296 ORTHO05D006452 4.8e-86 322.0 257 61.5
Lj4g0000030 Lotus japonicus HOM05D005296 ORTHO05D006452 3.1e-85 319.3 229 64.2
AagrBONN_evm.TU.Sc2ySwM_228.710 Anthoceros agrestis HOM05D005296 ORTHO05D006452 3.5e-84 315.8 261 61.3
Ciclev10024287m.g Citrus clementina HOM05D005296 ORTHO05D006452 3.5e-84 315.8 221 74.2
ATR1127G052 Amborella trichopoda HOM05D005296 ORTHO05D006452 1.0e-83 314.3 236 65.7
ATR0916G003 Amborella trichopoda HOM05D005296 ORTHO05D006452 1.9e-82 310.1 227 64.8
Mapoly0019s0068 Marchantia polymorpha HOM05D005296 ORTHO05D006452 2.3e-80 303.1 232 65.1
SMO367G1004 Selaginella moellendorffii HOM05D005296 ORTHO05D006452 2.0e-79 300.1 236 62.7
MELO3C021303.2 Cucumis melo HOM05D005296 ORTHO05D006452 3.4e-79 299.3 233 64.4
EL10Ac3g04942 Beta vulgaris HOM05D005296 ORTHO05D006452 4.2e-74 282.3 161 80.7
DCAR_002489 Daucus carota HOM05D005296 ORTHO05D006452 2.8e-73 279.6 282 57.4
SHI00197 Sapria himalayana HOM05D005296 ORTHO05D006452 6.1e-73 278.5 172 76.7
COL.COLO4_03630 Corchorus olitorius HOM05D005296 ORTHO05D006452 3.0e-72 276.2 235 63.8
TPR.G22773 Trifolium pratense HOM05D005296 ORTHO05D006452 7.5e-71 271.6 185 68.1
ClCG06G004890 Citrullus lanatus HOM05D005296 ORTHO05D006452 1.2e-68 264.2 243 60.9
FAN12G3138 Fragaria x ananassa HOM05D005296 ORTHO05D006452 1.2e-68 264.2 243 60.9
SGA_v2.0_scaffold146G36237 Striga asiatica HOM05D005296 ORTHO05D006452 2.3e-67 260.0 224 58.9
CSS0013365 Camellia sinensis var. sinensis HOM05D005296 ORTHO05D006452 2.3e-64 250.0 242 59.5
CBR_g37153 Chara braunii HOM05D005296 ORTHO05D006452 2.3e-64 250.0 305 45.6
Duzib212G0376 Durio zibethinus HOM05D005296 ORTHO05D006452 2.0e-60 236.9 195 63.6
Hund03087 Selenicereus undatus HOM05D005296 ORTHO05D006452 5.0e-59 232.3 188 66.0
Lsat_1_v5_gn_6_76180 Lactuca sativa HOM05D002249 ORTHO05D002443 2.5e-58 229.9 277 52.0
HPP92_006907 Vanilla planifolia HOM05D005296 ORTHO05D006452 2.6e-55 219.9 153 68.6
CDE08G0885 Ceratophyllum demersum HOM05D005296 ORTHO05D006452 9.8e-55 218.0 156 68.6
Psat4g063800 Pisum sativum HOM05D005296 ORTHO05D006452 3.6e-49 199.5 119 73.9
Cre12.g494250 Chlamydomonas reinhardtii HOM05D005296 ORTHO05D006452 2.3e-48 196.8 292 40.4
MCO07G237 Micromonas commoda HOM05D005296 ORTHO05D006452 6.6e-43 178.7 261 43.3
TPR.G17880 Trifolium pratense HOM05D005296 ORTHO05D006452 5.4e-37 159.1 115 67.0
MELO3C034931.2 Cucumis melo HOM05D005296 ORTHO05D006452 9.2e-37 158.3 109 73.4
PGR031G0664 Punica granatum HOM05D005296 ORTHO05D006452 1.1e-34 151.4 268 41.4
SGA_v2.0_scaffold227G43235 Striga asiatica HOM05D005296 ORTHO05D006452 3.1e-32 143.3 134 57.5
Psat4g063760 Pisum sativum HOM05D005296 ORTHO05D006452 1.3e-30 137.9 101 66.3
Ah.04g155180 Amaranthus hybridus HOM05D005296 ORTHO05D006452 1.4e-29 134.4 128 58.6
CBR_g19333 Chara braunii HOM05D005296 ORTHO05D006452 2.7e-28 130.2 122 54.9
MD02G1019800 Malus domestica HOM05D005296 ORTHO05D006452 1.5e-26 124.4 72 81.9
arahy.Tifrunner.gnm1.ann1.GS2NMQ Arachis hypogaea HOM05D005296 ORTHO05D006452 1.5e-18 97.8 57 82.5
arahy.Tifrunner.gnm1.ann1.GK6QEP Arachis hypogaea HOM05D005296 ORTHO05D006452 5.8e-15 85.9 74 56.8
Hma1.2p1_0180F.1_g079860 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 9.9e-15 85.1 87 57.5
Hma1.2p1_0718F.1_g208290 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 1.3e-14 84.7 94 50.0
Hma1.2p1_1570F.1_g291260 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 7.1e-13 79.0 53 73.6
arahy.Tifrunner.gnm1.ann1.3T38WV Arachis hypogaea HOM05D005296 ORTHO05D006452 4.6e-12 76.3 57 63.2


User provided reference genes

Program Settings