Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p010355 Quercus lobata HOM05D005204 ORTHO05D006037 0.0e+00 1358.6 683 100.0
Cfa015426 Carpinus fangiana HOM05D005204 ORTHO05D006037 7.2e-295 1016.9 703 74.8
CiPaw.02G079900 Carya illinoinensis HOM05D005204 ORTHO05D006037 4.6e-286 987.6 687 74.4
Haze_01167 Corylus avellana HOM05D005204 ORTHO05D006037 3.3e-276 954.9 853 62.0
Prupe.1G123900 Prunus persica HOM05D005204 ORTHO05D006037 9.4e-263 910.2 694 68.2
Thecc.04G288800 Theobroma cacao HOM05D005204 ORTHO05D006037 1.5e-260 902.9 676 71.0
COL.COLO4_13824 Corchorus olitorius HOM05D005204 ORTHO05D006037 2.8e-259 898.7 677 70.2
Ciclev10004466m.g Citrus clementina HOM05D005204 ORTHO05D006037 9.5e-255 883.6 688 67.9
MD16G1164600 Malus domestica HOM05D005204 ORTHO05D006037 1.6e-254 882.9 693 67.5
Atru.chr4.2898 Acer truncatum HOM05D005204 ORTHO05D006037 8.8e-253 877.1 690 69.6
RcHm_v2.0_Chr4g0423341 Rosa chinensis HOM05D005204 ORTHO05D006037 5.6e-247 857.8 696 67.0
Duzib052G0651 Durio zibethinus HOM05D005204 ORTHO05D006037 2.8e-246 855.5 671 67.7
FvH4_4g18640 Fragaria vesca HOM05D005204 ORTHO05D006037 1.5e-244 849.7 695 65.9
FAN12G0364 Fragaria x ananassa HOM05D005204 ORTHO05D006037 2.6e-244 849.0 695 66.6
MD13G1164900 Malus domestica HOM05D005204 ORTHO05D006037 1.8e-242 842.8 695 66.6
FAN12G3005 Fragaria x ananassa HOM05D005204 ORTHO05D006037 1.2e-241 840.1 682 67.2
Gohir.A02G050800 Gossypium hirsutum HOM05D005204 ORTHO05D006037 2.7e-241 839.0 678 68.6
FAN17G1530 Fragaria x ananassa HOM05D005204 ORTHO05D006037 4.6e-241 838.2 695 65.5
FAN07G2681 Fragaria x ananassa HOM05D005204 ORTHO05D006037 7.8e-241 837.4 682 66.0
TWI73G0558 Tripterygium wilfordii HOM05D005204 ORTHO05D006037 1.9e-239 832.8 692 66.2
Gohir.D02G055700 Gossypium hirsutum HOM05D005204 ORTHO05D006037 2.8e-238 828.9 678 68.0
Manes.03G200100 Manihot esculenta HOM05D005204 ORTHO05D006037 1.5e-236 823.2 685 64.7
CSS0048761 Camellia sinensis var. sinensis HOM05D005204 ORTHO05D006037 2.6e-236 822.4 695 65.3
TAR633G1027 Trochodendron aralioides HOM05D005204 ORTHO05D006037 2.2e-235 819.3 687 64.6
Gorai.005G061700 Gossypium raimondii HOM05D005204 ORTHO05D006037 3.2e-234 815.5 678 67.3
Potri.010G010480 Populus trichocarpa HOM05D005204 ORTHO05D006037 2.8e-230 802.4 686 63.7
Hma1.2p1_0078F.1_g040360 Hydrangea macrophylla HOM05D005204 ORTHO05D006037 4.6e-225 785.0 696 63.6
Sabra08G0151500 Salix brachista HOM05D005204 ORTHO05D006037 1.7e-224 783.1 685 61.5
Rhsim02G0007000 Rhododendron simsii HOM05D005204 ORTHO05D006037 1.1e-223 780.4 692 63.4
Potri.008G219100 Populus trichocarpa HOM05D005204 ORTHO05D006037 1.6e-222 776.5 685 61.9
Lj6g0026338 Lotus japonicus HOM05D005204 ORTHO05D006037 6.8e-221 771.2 691 62.4
Actinidia14280 Actinidia chinensis HOM05D005204 ORTHO05D006037 7.6e-220 767.7 647 63.7
arahy.Tifrunner.gnm1.ann1.02VXE5 Arachis hypogaea HOM05D005204 ORTHO05D006037 8.4e-219 764.2 677 61.3
arahy.Tifrunner.gnm1.ann1.J2HRGN Arachis hypogaea HOM05D005204 ORTHO05D006037 4.1e-218 761.9 677 61.3
Glyma.15G150700 Glycine max HOM05D005204 ORTHO05D006037 3.3e-215 752.3 683 61.6
Cpa.g.sc50.164 Carica papaya HOM05D005204 ORTHO05D006037 5.6e-215 751.5 692 60.1
Sabra10G0006400 Salix brachista HOM05D005204 ORTHO05D006037 7.3e-215 751.1 687 60.7
VMungo1309G0885 Vigna mungo HOM05D005204 ORTHO05D006037 1.1e-213 747.3 698 60.2
Nn1g01973 Nelumbo nucifera HOM05D005204 ORTHO05D006037 4.4e-212 741.9 687 59.8
Lalb_Chr20g0117381 Lupinus albus HOM05D005204 ORTHO05D006037 1.7e-211 740.0 679 60.1
Glyma.09G042300 Glycine max HOM05D005204 ORTHO05D006037 3.8e-211 738.8 683 60.9
GSVIVG01035108001 Vitis vinifera HOM05D005204 ORTHO05D006037 1.9e-207 726.5 753 56.4
Lalb_Chr18g0054391 Lupinus albus HOM05D005204 ORTHO05D006037 2.5e-207 726.1 670 60.1
Psat1g155920 Pisum sativum HOM05D005204 ORTHO05D006037 3.3e-207 725.7 694 59.8
Ca_01912_v3 Cicer arietinum L. HOM05D005204 ORTHO05D006037 2.8e-206 722.6 695 60.3
MBI18_g25094_MAGBIO Magnolia biondii HOM05D005204 ORTHO05D006037 1.8e-205 719.9 695 59.9
vmacro15212 Vaccinium macrocarpon HOM05D005204 ORTHO05D006037 8.4e-203 711.1 707 58.4
Oeu031982.1 Olea europaea HOM05D005204 ORTHO05D006037 6.0e-201 704.9 734 55.6
Phvul.009G250500 Phaseolus vulgaris HOM05D005204 ORTHO05D006037 1.0e-200 704.1 719 56.7
Oeu016254.2 Olea europaea HOM05D005204 ORTHO05D006037 3.0e-200 702.6 737 55.2
Sed0015514 Sechium edule HOM05D005204 ORTHO05D006037 2.5e-199 699.5 682 57.6
PGR004G0276 Punica granatum HOM05D005204 ORTHO05D006037 4.8e-198 695.3 681 58.1
Medtr2g436080 Medicago truncatula HOM05D005204 ORTHO05D006037 6.9e-197 691.4 615 62.1
Dinv29726 Davidia involucrata HOM05D005204 ORTHO05D006037 9.0e-197 691.0 588 62.9
TPR.G28067 Trifolium pratense HOM05D005204 ORTHO05D006037 1.4e-194 683.7 622 61.4
CAN.G484.49 Capsicum annuum HOM05D005204 ORTHO05D006037 2.1e-193 679.9 707 56.4
EL10Ac3g06651 Beta vulgaris HOM05D005204 ORTHO05D006037 4.3e-191 672.2 700 56.0
Sc13g0003240 Simmondsia chinensis HOM05D005204 ORTHO05D006037 6.2e-190 668.3 688 55.5
Lj6A680G91 Lonicera japonica HOM05D005204 ORTHO05D006037 8.2e-190 667.9 601 63.2
Peaxi162Scf00646g00324 Petunia axillaris HOM05D005204 ORTHO05D006037 1.4e-189 667.2 681 56.1
Manes.03G198500 Manihot esculenta HOM05D005204 ORTHO05D006037 2.6e-188 662.9 660 58.3
Cc03_g01540 Coffea canephora HOM05D005204 ORTHO05D006037 4.5e-188 662.1 738 54.3
PGSC0003DMG400004628 Solanum tuberosum HOM05D005204 ORTHO05D006037 6.5e-187 658.3 712 54.6
Hund20528 Selenicereus undatus HOM05D005204 ORTHO05D006037 2.5e-186 656.4 672 58.5
Eucgr.H03961 Eucalyptus grandis HOM05D005204 ORTHO05D006037 3.2e-186 656.0 698 56.2
THA.LOC104820287 Tarenaya hassleriana HOM05D005204 ORTHO05D006037 4.6e-185 652.1 684 55.1
Sopen12g034090 Solanum pennellii HOM05D005204 ORTHO05D006037 4.3e-183 645.6 699 54.8
Aqoxy5G00784 Aquilegia oxysepala HOM05D005204 ORTHO05D006037 3.7e-182 642.5 644 56.2
Nitab4.5_0003767g0030 Nicotiana tabacum HOM05D005204 ORTHO05D006037 8.2e-182 641.3 694 53.6
Solyc12g099420.2 Solanum lycopersicum HOM05D005204 ORTHO05D006037 1.4e-181 640.6 699 54.6
Nitab4.5_0000695g0090 Nicotiana tabacum HOM05D005204 ORTHO05D006037 6.9e-181 638.3 700 54.1
SalBow5G0318 Salvia bowleyana HOM05D005204 ORTHO05D006037 9.0e-181 637.9 695 53.2
ECA246G1739 Erigeron canadensis HOM05D005204 ORTHO05D006037 2.6e-180 636.3 693 53.8
Peaxi162Scf00065g01219 Petunia axillaris HOM05D005204 ORTHO05D006037 1.7e-179 633.6 691 54.7
AT3G16730 Arabidopsis thaliana HOM05D005204 ORTHO05D006037 2.9e-179 632.9 683 54.6
AL3G29660 Arabidopsis lyrata HOM05D005204 ORTHO05D006037 4.2e-178 629.0 690 54.2
MSTRG.24802 Avicennia marina HOM05D005204 ORTHO05D006037 9.3e-178 627.9 687 54.3
HanXRQChr06g0173751 Helianthus annuus HOM05D005204 ORTHO05D006037 1.6e-177 627.1 698 53.6
BcaC05g28856 Brassica carinata HOM05D005204 ORTHO05D006037 2.7e-177 626.3 667 54.9
MELO3C010685.2 Cucumis melo HOM05D005204 ORTHO05D006037 3.6e-177 625.9 597 56.6
Migut.N00079 Erythranthe guttata HOM05D005204 ORTHO05D006037 1.8e-176 623.6 690 53.3
C05p49580 Brassica napus HOM05D005204 ORTHO05D006037 6.7e-176 621.7 668 54.9
BolC5t33716H Brassica oleracea HOM05D005204 ORTHO05D006037 6.7e-176 621.7 668 54.9
Sp3g15000 Schrenkiella parvula HOM05D005204 ORTHO05D006037 6.7e-176 621.7 682 54.1
BraA05t22110Z Brassica rapa HOM05D005204 ORTHO05D006037 4.3e-175 619.0 670 55.2
BcaB06g25769 Brassica carinata HOM05D005204 ORTHO05D006037 1.3e-174 617.5 667 54.0
A05p32870 Brassica napus HOM05D005204 ORTHO05D006037 1.3e-174 617.5 669 55.0
Carub.0003s1646 Capsella rubella HOM05D005204 ORTHO05D006037 1.4e-173 614.0 669 53.7
ClCG08G017750 Citrullus lanatus HOM05D005204 ORTHO05D006037 9.1e-173 611.3 609 55.5
Thhalv10020220m.g Eutrema salsugineum HOM05D005204 ORTHO05D006037 5.9e-172 608.6 670 54.9
Nitab4.5_0000570g0320 Nicotiana tabacum HOM05D005204 ORTHO05D006037 5.9e-172 608.6 722 51.7
Nitab4.5_0003484g0040 Nicotiana tabacum HOM05D005204 ORTHO05D006037 6.5e-171 605.1 704 52.3
AUR62018070 Chenopodium quinoa HOM05D005204 ORTHO05D006037 8.5e-171 604.7 716 51.7
Aa31LG8G3820 Aethionema arabicum HOM05D005204 ORTHO05D006037 4.2e-170 602.4 687 52.4
AUR62015273 Chenopodium quinoa HOM05D005204 ORTHO05D006037 7.9e-169 598.2 666 53.6
BraA01t03817Z Brassica rapa HOM05D005204 ORTHO05D006037 2.0e-167 593.6 673 53.5
A01p37560 Brassica napus HOM05D005204 ORTHO05D006037 1.3e-166 590.9 673 53.3
SGA_v2.0_scaffold428G51532 Striga asiatica HOM05D005204 ORTHO05D006037 8.2e-166 588.2 705 50.9
BolC1t04731H Brassica oleracea HOM05D005204 ORTHO05D006037 1.5e-164 583.9 673 52.6
C01p47610 Brassica napus HOM05D005204 ORTHO05D006037 1.7e-163 580.5 674 53.3
PSO832G0069 Papaver somniferum HOM05D005204 ORTHO05D006037 1.7e-163 580.5 697 50.9
Lsat_1_v5_gn_3_21680 Lactuca sativa HOM05D005204 ORTHO05D006037 1.4e-160 570.9 697 50.4
CsaV3_7G000690 Cucumis sativus L. HOM05D005204 ORTHO05D006037 6.7e-160 568.5 631 52.1
ATR0693G386 Amborella trichopoda HOM05D005204 ORTHO05D006037 5.7e-159 565.5 679 49.3
BcaC09g48627 Brassica carinata HOM05D005204 ORTHO05D006037 5.7e-159 565.5 634 54.7
PSO210G5425 Papaver somniferum HOM05D005204 ORTHO05D006037 7.4e-159 565.1 697 50.4
Ah.04g153660 Amaranthus hybridus HOM05D005204 ORTHO05D006037 3.2e-154 549.7 685 51.7
CsaV3_2G024870 Cucumis sativus L. HOM05D005204 ORTHO05D006037 3.6e-153 546.2 621 51.4
SHI00244 Sapria himalayana HOM05D005204 ORTHO05D006037 1.2e-140 504.6 804 41.8
DCAR_030505 Daucus carota HOM05D005204 ORTHO05D006037 1.5e-138 497.7 648 47.4
HPP92_012404 Vanilla planifolia HOM05D005204 ORTHO05D006037 4.0e-136 489.6 687 47.5
DCAR_023300 Daucus carota HOM05D005204 ORTHO05D006037 2.2e-134 483.8 614 48.0
Zm00001eb322750 Zea mays HOM05D005204 ORTHO05D006037 3.7e-134 483.0 688 45.5
TAR362G0889 Trochodendron aralioides HOM05D005204 ORTHO05D006037 2.8e-129 466.8 504 54.2
Os07g0517300 Oryza sativa ssp. japonica HOM05D005204 ORTHO05D006037 1.1e-122 444.9 670 43.6
CDE05G2961 Ceratophyllum demersum HOM05D005204 ORTHO05D006037 7.0e-117 425.6 696 41.8
CARHR091990 Cardamine hirsuta HOM05D005204 ORTHO05D006037 4.3e-114 416.4 423 57.0
Nn3g19294 Nelumbo nucifera HOM05D005204 ORTHO05D006037 6.4e-110 402.5 620 41.5
SEGI_08509 Sequoiadendron giganteum HOM05D005204 ORTHO05D006037 2.3e-99 367.5 730 36.7
Zm00001eb106060 Zea mays HOM05D005204 ORTHO05D006037 1.2e-92 345.1 603 39.3
Mapoly0137s0008 Marchantia polymorpha HOM05D005204 ORTHO05D006037 3.2e-77 293.9 692 34.1
TAR624G0487 Trochodendron aralioides HOM05D005204 ORTHO05D006037 4.6e-76 290.0 334 50.9
Dinv44351 Davidia involucrata HOM05D005204 ORTHO05D006037 7.9e-76 289.3 686 34.4
SMO367G0335 Selaginella moellendorffii HOM05D005204 ORTHO05D006037 3.7e-73 280.4 595 35.6
unitig_749.g14080 Utricularia gibba HOM05D005204 ORTHO05D006037 2.7e-68 264.2 660 32.7
Actinidia13388 Actinidia chinensis HOM05D005204 ORTHO05D006037 6.3e-57 226.5 182 68.1
CARHR091980 Cardamine hirsuta HOM05D005204 ORTHO05D006037 6.9e-56 223.0 248 52.4
TAR624G0737 Trochodendron aralioides HOM05D005204 ORTHO05D006037 1.4e-53 215.3 179 65.4
ATR0693G078 Amborella trichopoda HOM05D005204 ORTHO05D006037 7.4e-50 203.0 228 53.1
AagrBONN_evm.TU.Sc2ySwM_340.303 Anthoceros agrestis HOM05D005204 ORTHO05D006037 1.7e-46 191.8 490 32.0
CBR_g38039 Chara braunii HOM05D005204 ORTHO05D006037 3.8e-38 164.1 727 27.6
PGR004G0772 Punica granatum HOM05D005204 ORTHO05D006037 6.1e-36 156.8 125 65.6
Manes.17G118669 Manihot esculenta HOM05D005204 ORTHO05D006037 5.0e-30 137.1 142 56.3
Dinv29725 Davidia involucrata HOM05D005204 ORTHO05D006037 3.6e-28 131.0 97 71.1
PRCOL_00000998 Prasinoderma coloniale HOM05D005204 ORTHO05D006037 1.4e-27 129.0 649 26.0
DCAR_031703 Daucus carota HOM05D005204 ORTHO05D006037 4.5e-23 114.0 105 55.2
TAR362G0435 Trochodendron aralioides HOM05D005204 ORTHO05D006037 1.2e-15 89.4 110 50.9
Cre09.g408900 Chlamydomonas reinhardtii HOM05D005204 ORTHO05D006037 2.9e-14 84.7 175 36.0
ATR0296G001 Amborella trichopoda HOM05D005204 ORTHO05D006037 2.0e-10 72.0 88 50.0
Zm00001eb009560 Zea mays HOM05D005204 ORTHO05D006037 2.6e-10 71.6 133 36.8
Zm00001eb046380 Zea mays HOM05D005204 ORTHO05D006037 2.6e-10 71.6 133 36.8
Zm00001eb219840 Zea mays HOM05D005204 ORTHO05D006037 2.6e-10 71.6 133 36.8
Atru.chr3.336 Acer truncatum HOM05D004186 ORTHO05D006037 1.3e-09 69.3 63 54.0
Zm00001eb139240 Zea mays HOM05D001287 ORTHO05D006037 1.3e-09 69.3 59 54.2
Zm00001eb139230 Zea mays HOM05D005204 ORTHO05D006037 1.1e-08 66.2 129 34.9
CSS0012295 Camellia sinensis var. sinensis HOM05D005204 ORTHO05D006037 6.0e-07 60.5 96 46.9


User provided reference genes

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