Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p010208 Quercus lobata HOM05D004309 ORTHO05D005588 5.3e-81 304.3 154 100.0
QL06p010180 Quercus lobata HOM05D004309 ORTHO05D005588 5.8e-51 204.5 132 82.6
Nn3g21534 Nelumbo nucifera HOM05D004309 ORTHO05D005588 3.6e-45 185.3 108 86.1
TWI09G0267 Tripterygium wilfordii HOM05D004309 ORTHO05D005588 3.6e-45 185.3 108 86.1
Cfa015422 Carpinus fangiana HOM05D004309 ORTHO05D005588 6.8e-44 181.0 131 74.8
CSS0011476 Camellia sinensis var. sinensis HOM05D004309 ORTHO05D005588 1.2e-43 180.3 130 72.3
Manes.03G198200 Manihot esculenta HOM05D004309 ORTHO05D005588 3.4e-43 178.7 132 70.5
TAR633G1513 Trochodendron aralioides HOM05D004309 ORTHO05D005588 4.4e-43 178.3 129 72.9
CiPaw.01G145800 Carya illinoinensis HOM05D004309 ORTHO05D005588 9.8e-43 177.2 130 73.1
Prupe.1G125100 Prunus persica HOM05D004309 ORTHO05D005588 9.8e-43 177.2 130 73.1
Sabra10G0006000 Salix brachista HOM05D004309 ORTHO05D005588 2.2e-42 176.0 129 71.3
Sc19g0005430 Simmondsia chinensis HOM05D004309 ORTHO05D005588 2.9e-42 175.6 128 72.7
GSVIVG01035117001 Vitis vinifera HOM05D004309 ORTHO05D005588 4.9e-42 174.9 130 71.5
Aqoxy2G02913 Aquilegia oxysepala HOM05D004309 ORTHO05D005588 2.4e-41 172.6 129 71.3
Atru.chr4.2894 Acer truncatum HOM05D004309 ORTHO05D005588 3.2e-41 172.2 131 71.0
PSO170G6503 Papaver somniferum HOM05D004309 ORTHO05D005588 7.1e-41 171.0 126 71.4
PSO407G0025 Papaver somniferum HOM05D004309 ORTHO05D005588 7.1e-41 171.0 126 71.4
PSO444G0002 Papaver somniferum HOM05D004309 ORTHO05D005588 7.1e-41 171.0 126 71.4
Potri.010G011000 Populus trichocarpa HOM05D004309 ORTHO05D005588 9.2e-41 170.6 129 70.5
ClCG05G006230 Citrullus lanatus HOM05D004309 ORTHO05D005588 1.2e-40 170.2 129 69.0
Sed0001785 Sechium edule HOM05D004309 ORTHO05D005588 1.2e-40 170.2 129 68.2
CANSAT78G0198 Cannabis sativa HOM05D004309 ORTHO05D005588 1.6e-40 169.9 128 72.7
Duzib212G0876 Durio zibethinus HOM05D004309 ORTHO05D005588 1.6e-40 169.9 129 71.3
Hma1.2p1_0078F.1_g040370 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 1.6e-40 169.9 130 68.5
FvH4_4g18580 Fragaria vesca HOM05D004309 ORTHO05D005588 2.7e-40 169.1 126 73.0
Thecc.04G288300 Theobroma cacao HOM05D004309 ORTHO05D005588 2.7e-40 169.1 129 70.5
CsaV3_3G014840 Cucumis sativus L. HOM05D004309 ORTHO05D005588 3.5e-40 168.7 129 68.2
ATR0150G025 Amborella trichopoda HOM05D004309 ORTHO05D005588 4.6e-40 168.3 129 70.5
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 4.6e-40 168.3 156 62.2
RcHm_v2.0_Chr4g0423181 Rosa chinensis HOM05D004309 ORTHO05D005588 4.6e-40 168.3 126 72.2
vmacro08183 Vaccinium macrocarpon HOM05D004309 ORTHO05D005588 4.6e-40 168.3 132 67.4
Phvul.003G106800 Phaseolus vulgaris HOM05D004309 ORTHO05D005588 6.0e-40 167.9 131 67.9
Actinidia00004 Actinidia chinensis HOM05D004309 ORTHO05D005588 7.8e-40 167.5 130 67.7
THA.LOC104802581 Tarenaya hassleriana HOM05D004309 ORTHO05D005588 7.8e-40 167.5 129 68.2
arahy.Tifrunner.gnm1.ann1.9V15EM Arachis hypogaea HOM05D004309 ORTHO05D005588 1.0e-39 167.2 131 67.9
arahy.Tifrunner.gnm1.ann1.YC35GQ Arachis hypogaea HOM05D004309 ORTHO05D007726 1.0e-39 167.2 131 67.9
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 1.0e-39 167.2 129 69.8
Nitab4.5_0000695g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 1.3e-39 166.8 130 67.7
Rhsim04G0225000 Rhododendron simsii HOM05D004309 ORTHO05D005588 1.3e-39 166.8 129 69.0
Nitab4.5_0006814g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 1.7e-39 166.4 130 67.7
Lj4g0021722 Lotus japonicus HOM05D004309 ORTHO05D007726 2.3e-39 166.0 131 66.4
DCAR_027056 Daucus carota HOM05D004309 ORTHO05D005588 3.0e-39 165.6 130 66.9
Sed0024380 Sechium edule HOM05D004309 ORTHO05D005588 3.0e-39 165.6 128 68.0
Solyc01g066480.3 Solanum lycopersicum HOM05D004309 ORTHO05D005588 3.9e-39 165.2 130 66.2
Sopen01g028230 Solanum pennellii HOM05D004309 ORTHO05D005588 3.9e-39 165.2 130 66.2
Glyma.07G245900 Glycine max HOM05D004309 ORTHO05D005588 5.1e-39 164.9 131 66.4
Dinv29733 Davidia involucrata HOM05D004309 ORTHO05D005588 6.6e-39 164.5 130 67.7
Glyma.17G028100 Glycine max HOM05D004309 ORTHO05D005588 6.6e-39 164.5 151 60.9
Lj3A823G59 Lonicera japonica HOM05D004309 ORTHO05D005588 6.6e-39 164.5 130 67.7
MELO3C006680.2 Cucumis melo HOM05D004309 ORTHO05D005588 8.6e-39 164.1 143 61.5
Eucgr.C01303 Eucalyptus grandis HOM05D004309 ORTHO05D005588 1.5e-38 163.3 129 65.9
Lsat_1_v5_gn_3_24101 Lactuca sativa HOM05D004309 ORTHO05D005588 1.5e-38 163.3 150 62.7
Psat4g026320 Pisum sativum HOM05D004309 ORTHO05D005588 1.9e-38 162.9 131 65.6
EL10Ac3g06636 Beta vulgaris HOM05D004309 ORTHO05D005588 2.5e-38 162.5 128 67.2
CARHR290520 Cardamine hirsuta HOM05D004309 ORTHO05D005588 2.5e-38 162.5 129 68.2
CDE11G0079 Ceratophyllum demersum HOM05D004309 ORTHO05D005588 2.5e-38 162.5 148 62.8
DCAR_023296 Daucus carota HOM05D004309 ORTHO05D005588 2.5e-38 162.5 130 67.7
ECA246G0235 Erigeron canadensis HOM05D004309 ORTHO05D005588 2.5e-38 162.5 128 68.0
Gorai.002G028600 Gossypium raimondii HOM05D004309 ORTHO05D005588 2.5e-38 162.5 129 69.8
PGR031G0395 Punica granatum HOM05D004309 ORTHO05D005588 2.5e-38 162.5 128 68.0
BcaC07g37940 Brassica carinata HOM05D004309 ORTHO05D005588 3.3e-38 162.2 129 68.2
CAN.G1639.2 Capsicum annuum HOM05D004309 ORTHO05D005588 3.3e-38 162.2 130 66.2
Gohir.A01G033033 Gossypium hirsutum HOM05D004309 ORTHO05D005588 3.3e-38 162.2 129 69.8
BolC8t48324H Brassica oleracea HOM05D004309 ORTHO05D005588 4.3e-38 161.8 129 68.2
Thhalv10026185m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 4.3e-38 161.8 129 68.2
HanXRQChr06g0173801 Helianthus annuus HOM05D004309 ORTHO05D005588 4.3e-38 161.8 128 68.0
Sp7g14390 Schrenkiella parvula HOM05D004309 ORTHO05D005588 4.3e-38 161.8 129 68.2
BcaB04g18344 Brassica carinata HOM05D004309 ORTHO05D005588 5.6e-38 161.4 129 68.2
Gohir.D01G023490 Gossypium hirsutum HOM05D004309 ORTHO05D005588 5.6e-38 161.4 129 69.0
Medtr4g120230 Medicago truncatula HOM05D004309 ORTHO05D005588 5.6e-38 161.4 128 67.2
BcaB04g18345 Brassica carinata HOM05D004309 ORTHO05D005588 9.5e-38 160.6 129 67.4
Carub.0007s2572 Capsella rubella HOM05D004309 ORTHO05D005588 9.5e-38 160.6 129 67.4
SalBow5G3240 Salvia bowleyana HOM05D004309 ORTHO05D005588 9.5e-38 160.6 128 65.6
AL7G39330 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 1.2e-37 160.2 129 67.4
A08p12070 Brassica napus HOM05D004309 ORTHO05D005588 1.2e-37 160.2 129 67.4
BraA08t33198Z Brassica rapa HOM05D004309 ORTHO05D005588 1.2e-37 160.2 129 67.4
AUR62001364 Chenopodium quinoa HOM05D004309 ORTHO05D005588 1.6e-37 159.8 130 63.8
VMungo1215G2421 Vigna mungo HOM05D004309 ORTHO05D005588 1.6e-37 159.8 131 64.1
A08p12080 Brassica napus HOM05D004309 ORTHO05D005588 2.1e-37 159.5 129 67.4
BraA08t33199Z Brassica rapa HOM05D004309 ORTHO05D005588 2.1e-37 159.5 129 67.4
SGA_v2.0_scaffold91G28010 Striga asiatica HOM05D004309 ORTHO05D005588 2.1e-37 159.5 126 67.5
Cc03_g01580 Coffea canephora HOM05D004309 ORTHO05D005588 3.6e-37 158.7 126 65.1
FAN12G1798 Fragaria x ananassa HOM05D004309 ORTHO05D005588 4.7e-37 158.3 120 71.7
HPP92_010660 Vanilla planifolia HOM05D004309 ORTHO05D005588 8.1e-37 157.5 126 66.7
TPR.G3211 Trifolium pratense HOM05D004309 ORTHO05D005588 1.1e-36 157.1 130 64.6
HPP92_010682 Vanilla planifolia HOM05D004309 ORTHO05D005588 1.1e-36 157.1 126 65.9
Thhalv10021471m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 1.4e-36 156.8 129 65.9
AUR62025637 Chenopodium quinoa HOM05D004309 ORTHO05D005588 1.8e-36 156.4 129 62.8
Aa31LG10G6200 Aethionema arabicum HOM05D004309 ORTHO05D005588 2.3e-36 156.0 152 57.9
Lalb_Chr07g0182331 Lupinus albus HOM05D004309 ORTHO05D005588 3.1e-36 155.6 131 64.9
Sp3g14970 Schrenkiella parvula HOM05D004309 ORTHO05D005588 3.1e-36 155.6 129 65.1
Hund24883 Selenicereus undatus HOM05D004309 ORTHO05D005588 3.1e-36 155.6 130 64.6
AT4G15940 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 5.2e-36 154.8 129 67.4
SEGI_31265 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 5.2e-36 154.8 128 64.8
Migut.N00082 Erythranthe guttata HOM05D004309 ORTHO05D005588 6.8e-36 154.5 130 63.1
Ah.08g217630 Amaranthus hybridus HOM05D004309 ORTHO05D005588 2.0e-35 152.9 131 61.8
MSTRG.24800 Avicennia marina HOM05D004309 ORTHO05D005588 3.4e-35 152.1 126 61.9
Eucgr.C01444 Eucalyptus grandis HOM05D004309 ORTHO05D005588 3.4e-35 152.1 123 64.2
unitig_749.g13387 Utricularia gibba HOM05D004309 ORTHO05D005588 4.4e-35 151.8 128 63.3
Zm00001eb053490 Zea mays HOM05D004309 ORTHO05D005588 4.4e-35 151.8 126 64.3
Zm00001eb063500 Zea mays HOM05D004309 ORTHO05D005588 4.4e-35 151.8 126 62.7
EL10Ac7g18188 Beta vulgaris HOM05D004309 ORTHO05D005588 7.6e-35 151.0 131 59.5
Ciclev10005665m.g Citrus clementina HOM05D004309 ORTHO05D005588 7.6e-35 151.0 164 54.3
Os03g0829000 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 1.7e-34 149.8 128 62.5
BcaC09g48622 Brassica carinata HOM05D004309 ORTHO05D005588 2.2e-34 149.4 129 62.0
BolC1t04737H Brassica oleracea HOM05D004309 ORTHO05D005588 2.2e-34 149.4 129 62.0
A01p37620 Brassica napus HOM05D004309 ORTHO05D005588 2.9e-34 149.1 129 61.2
BraA01t03822Z Brassica rapa HOM05D004309 ORTHO05D005588 3.7e-34 148.7 129 60.5
C01p47650 Brassica napus HOM05D004309 ORTHO05D005588 4.9e-34 148.3 129 61.2
Aa31LG8G3800 Aethionema arabicum HOM05D004309 ORTHO05D005588 6.4e-34 147.9 129 62.0
Carub.0003s1643 Capsella rubella HOM05D004309 ORTHO05D005588 6.4e-34 147.9 129 61.2
AL3G29630 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 8.4e-34 147.5 131 62.6
AagrBONN_evm.TU.Sc2ySwM_344.4111 Anthoceros agrestis HOM05D004309 ORTHO05D005588 3.5e-32 142.1 131 58.8
CARHR091950 Cardamine hirsuta HOM05D004309 ORTHO05D005588 4.6e-32 141.7 91 74.7
CBR_g26355 Chara braunii HOM05D004309 ORTHO05D005588 1.3e-31 140.2 131 58.0
Ciclev10006783m.g Citrus clementina HOM05D004309 ORTHO05D005588 3.0e-31 139.0 91 75.8
Pp3c9_26130 Physcomitrium patens HOM05D004309 ORTHO05D005588 3.9e-31 138.7 126 59.5
Mapoly0093s0048 Marchantia polymorpha HOM05D004309 ORTHO05D005588 3.3e-30 135.6 126 59.5
Lj6A680G88 Lonicera japonica HOM05D004309 ORTHO05D005588 9.6e-30 134.0 114 63.2
Thhalv10026938m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 4.7e-29 131.7 94 73.4
Oeu053993.1 Olea europaea HOM05D004309 ORTHO05D005588 6.2e-29 131.3 174 47.1
ATR0326G053 Amborella trichopoda HOM05D004309 ORTHO05D005588 1.1e-28 130.6 77 83.1
AUR62024358 Chenopodium quinoa HOM05D002697 ORTHO05D003087 7.8e-24 114.4 69 76.8
SMO347G0543 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 2.3e-23 112.8 133 51.9
AUR62018079 Chenopodium quinoa HOM05D004309 ORTHO05D005588 2.5e-22 109.4 97 59.8
RcHm_v2.0_Chr4g0423191 Rosa chinensis HOM05D004309 ORTHO05D005588 1.3e-21 107.1 67 80.6
Prupe.1G124800 Prunus persica HOM05D004309 ORTHO05D005588 3.4e-19 99.0 60 81.7
Lsat_1_v5_gn_8_151620 Lactuca sativa HOM05D004309 ORTHO05D012139 1.1e-17 94.0 60 81.7
GSVIVG01010688001 Vitis vinifera HOM05D004309 ORTHO05D005588 1.1e-17 94.0 57 77.2
PRCOL_00005024 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 1.4e-17 93.6 165 37.6
Cfa022490 Carpinus fangiana HOM05D004309 ORTHO05D005588 1.3e-15 87.0 114 42.1
Cpa.g.sc50.168 Carica papaya HOM05D004309 ORTHO05D005588 5.3e-12 75.1 46 78.3
Lsat_1_v5_gn_3_26221 Lactuca sativa HOM05D004309 ORTHO05D005588 4.5e-11 72.0 41 85.4
Haze_27427 Corylus avellana HOM05D004309 ORTHO05D005588 2.2e-10 69.7 80 48.8
Pp3s34_290 Physcomitrium patens HOM05D000879 ORTHO05D000265 3.2e-09 65.9 76 43.4
Cre12.g549450 Chlamydomonas reinhardtii HOM05D004309 ORTHO05D005588 7.1e-09 64.7 117 35.0
SEGI_02276 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 4.6e-08 62.0 116 37.1
SMO353G0001 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 8.7e-07 57.8 83 43.4
Pp3c6_20080 Physcomitrium patens HOM05D004309 ORTHO05D005588 1.9e-06 56.6 123 34.1
Sc26g0002580 Simmondsia chinensis HOM05D004309 ORTHO05D005588 2.5e-06 56.2 64 50.0
Haze_27486 Corylus avellana HOM05D004309 ORTHO05D005588 4.3e-06 55.5 70 41.4
MCO13G238 Micromonas commoda HOM05D004309 ORTHO05D005588 7.4e-06 54.7 65 47.7
PRCOL_00000256 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 9.6e-06 54.3 62 46.8


User provided reference genes

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