Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p010180 Quercus lobata HOM05D004309 ORTHO05D005588 8.2e-123 443.7 224 100.0
Sabra10G0006000 Salix brachista HOM05D004309 ORTHO05D005588 9.4e-103 377.1 221 84.6
Atru.chr4.2894 Acer truncatum HOM05D004309 ORTHO05D005588 1.6e-102 376.3 221 85.1
CSS0011476 Camellia sinensis var. sinensis HOM05D004309 ORTHO05D005588 1.0e-101 373.6 220 85.0
Sc19g0005430 Simmondsia chinensis HOM05D004309 ORTHO05D005588 1.4e-101 373.2 220 84.1
GSVIVG01035117001 Vitis vinifera HOM05D004309 ORTHO05D005588 1.4e-101 373.2 221 84.6
CiPaw.01G145800 Carya illinoinensis HOM05D004309 ORTHO05D005588 1.8e-101 372.9 220 85.9
Dinv29733 Davidia involucrata HOM05D004309 ORTHO05D005588 1.8e-101 372.9 222 84.7
TAR633G1513 Trochodendron aralioides HOM05D004309 ORTHO05D005588 1.8e-101 372.9 219 85.4
Potri.010G011000 Populus trichocarpa HOM05D004309 ORTHO05D005588 5.2e-101 371.3 221 84.2
Manes.03G198200 Manihot esculenta HOM05D004309 ORTHO05D005588 6.8e-101 370.9 221 83.7
Hma1.2p1_0078F.1_g040370 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 1.2e-100 370.2 218 84.4
CANSAT78G0198 Cannabis sativa HOM05D004309 ORTHO05D005588 1.5e-100 369.8 220 84.1
Actinidia00004 Actinidia chinensis HOM05D004309 ORTHO05D005588 2.0e-100 369.4 222 82.4
ATR0150G025 Amborella trichopoda HOM05D004309 ORTHO05D005588 2.6e-100 369.0 223 82.5
Prupe.1G125100 Prunus persica HOM05D004309 ORTHO05D005588 4.4e-100 368.2 224 83.0
Aqoxy2G02913 Aquilegia oxysepala HOM05D004309 ORTHO05D005588 5.7e-100 367.9 221 83.3
Cfa015422 Carpinus fangiana HOM05D004309 ORTHO05D005588 1.3e-99 366.7 220 85.9
THA.LOC104802581 Tarenaya hassleriana HOM05D004309 ORTHO05D005588 1.7e-99 366.3 221 81.0
Duzib212G0876 Durio zibethinus HOM05D004309 ORTHO05D005588 2.8e-99 365.5 220 83.6
Thecc.04G288300 Theobroma cacao HOM05D004309 ORTHO05D005588 6.3e-99 364.4 219 84.0
PSO170G6503 Papaver somniferum HOM05D004309 ORTHO05D005588 1.1e-98 363.6 214 84.6
PSO407G0025 Papaver somniferum HOM05D004309 ORTHO05D005588 1.1e-98 363.6 214 84.6
PSO444G0002 Papaver somniferum HOM05D004309 ORTHO05D005588 1.1e-98 363.6 214 84.6
BcaC07g37940 Brassica carinata HOM05D004309 ORTHO05D005588 3.1e-98 362.1 223 80.3
ClCG05G006230 Citrullus lanatus HOM05D004309 ORTHO05D005588 3.1e-98 362.1 217 82.5
PGR031G0395 Punica granatum HOM05D004309 ORTHO05D005588 3.1e-98 362.1 223 82.5
Ciclev10005665m.g Citrus clementina HOM05D004309 ORTHO05D005588 4.1e-98 361.7 257 73.2
Lj4g0021722 Lotus japonicus HOM05D004309 ORTHO05D007726 5.4e-98 361.3 224 79.9
BolC8t48324H Brassica oleracea HOM05D004309 ORTHO05D005588 7.0e-98 360.9 223 80.3
Lj3A823G59 Lonicera japonica HOM05D004309 ORTHO05D005588 9.1e-98 360.5 220 82.7
FvH4_4g18580 Fragaria vesca HOM05D004309 ORTHO05D005588 1.2e-97 360.1 216 83.8
CDE11G0079 Ceratophyllum demersum HOM05D004309 ORTHO05D005588 1.6e-97 359.8 218 83.9
A08p12070 Brassica napus HOM05D004309 ORTHO05D005588 2.0e-97 359.4 223 79.8
BraA08t33198Z Brassica rapa HOM05D004309 ORTHO05D005588 2.0e-97 359.4 223 79.8
Sed0001785 Sechium edule HOM05D004309 ORTHO05D005588 2.0e-97 359.4 217 81.1
Sed0024380 Sechium edule HOM05D004309 ORTHO05D005588 2.0e-97 359.4 216 82.4
Sp7g14390 Schrenkiella parvula HOM05D004309 ORTHO05D005588 2.7e-97 359.0 223 79.4
arahy.Tifrunner.gnm1.ann1.9V15EM Arachis hypogaea HOM05D004309 ORTHO05D005588 3.5e-97 358.6 220 81.4
Lsat_1_v5_gn_3_24101 Lactuca sativa HOM05D004309 ORTHO05D005588 4.5e-97 358.2 215 83.3
CsaV3_3G014840 Cucumis sativus L. HOM05D004309 ORTHO05D005588 5.9e-97 357.8 217 81.6
Nitab4.5_0000695g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 7.7e-97 357.5 218 80.7
Thhalv10026185m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 1.0e-96 357.1 223 78.9
Nitab4.5_0006814g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 1.0e-96 357.1 218 80.7
Psat4g026320 Pisum sativum HOM05D004309 ORTHO05D005588 1.0e-96 357.1 221 79.6
Carub.0007s2572 Capsella rubella HOM05D004309 ORTHO05D005588 1.3e-96 356.7 223 78.9
CARHR290520 Cardamine hirsuta HOM05D004309 ORTHO05D005588 1.3e-96 356.7 223 78.5
DCAR_023296 Daucus carota HOM05D004309 ORTHO05D005588 1.3e-96 356.7 220 81.4
HanXRQChr06g0173801 Helianthus annuus HOM05D004309 ORTHO05D005588 1.3e-96 356.7 215 81.9
Rhsim04G0225000 Rhododendron simsii HOM05D004309 ORTHO05D005588 1.7e-96 356.3 215 83.7
Sopen01g028230 Solanum pennellii HOM05D004309 ORTHO05D005588 1.7e-96 356.3 216 80.6
SGA_v2.0_scaffold91G28010 Striga asiatica HOM05D004309 ORTHO05D005588 1.7e-96 356.3 214 83.2
arahy.Tifrunner.gnm1.ann1.YC35GQ Arachis hypogaea HOM05D004309 ORTHO05D007726 2.2e-96 355.9 220 80.9
BcaB04g18344 Brassica carinata HOM05D004309 ORTHO05D005588 2.2e-96 355.9 223 78.9
Eucgr.C01303 Eucalyptus grandis HOM05D004309 ORTHO05D005588 2.2e-96 355.9 223 80.3
RcHm_v2.0_Chr4g0423181 Rosa chinensis HOM05D004309 ORTHO05D005588 2.2e-96 355.9 216 81.9
CAN.G1639.2 Capsicum annuum HOM05D004309 ORTHO05D005588 2.9e-96 355.5 216 81.0
vmacro08183 Vaccinium macrocarpon HOM05D004309 ORTHO05D005588 2.9e-96 355.5 216 83.3
ECA246G0235 Erigeron canadensis HOM05D004309 ORTHO05D005588 3.8e-96 355.1 215 81.4
Phvul.003G106800 Phaseolus vulgaris HOM05D004309 ORTHO05D005588 3.8e-96 355.1 221 80.1
Solyc01g066480.3 Solanum lycopersicum HOM05D004309 ORTHO05D005588 5.0e-96 354.8 216 80.1
AL7G39330 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 6.5e-96 354.4 223 78.0
DCAR_027056 Daucus carota HOM05D004309 ORTHO05D005588 1.1e-95 353.6 218 80.3
Gorai.002G028600 Gossypium raimondii HOM05D004309 ORTHO05D005588 1.5e-95 353.2 220 81.4
Gohir.A01G033033 Gossypium hirsutum HOM05D004309 ORTHO05D005588 3.2e-95 352.1 220 80.9
Gohir.D01G023490 Gossypium hirsutum HOM05D004309 ORTHO05D005588 3.2e-95 352.1 220 80.9
Glyma.17G028100 Glycine max HOM05D004309 ORTHO05D005588 4.2e-95 351.7 221 79.2
VMungo1215G2421 Vigna mungo HOM05D004309 ORTHO05D005588 4.2e-95 351.7 221 79.2
AT4G15940 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 5.5e-95 351.3 223 78.9
Cc03_g01580 Coffea canephora HOM05D004309 ORTHO05D005588 5.5e-95 351.3 219 79.0
TPR.G3211 Trifolium pratense HOM05D004309 ORTHO05D005588 9.4e-95 350.5 220 79.1
Glyma.07G245900 Glycine max HOM05D004309 ORTHO05D005588 1.6e-94 349.7 221 79.2
SalBow5G3240 Salvia bowleyana HOM05D004309 ORTHO05D005588 2.1e-94 349.4 216 78.2
Medtr4g120230 Medicago truncatula HOM05D004309 ORTHO05D005588 3.6e-94 348.6 212 81.6
MELO3C006680.2 Cucumis melo HOM05D004309 ORTHO05D005588 6.1e-94 347.8 231 77.1
Hund24883 Selenicereus undatus HOM05D004309 ORTHO05D005588 6.1e-94 347.8 220 79.1
Lalb_Chr07g0182331 Lupinus albus HOM05D004309 ORTHO05D005588 2.3e-93 345.9 224 77.2
Migut.N00082 Erythranthe guttata HOM05D004309 ORTHO05D005588 6.8e-93 344.4 218 77.5
HPP92_010682 Vanilla planifolia HOM05D004309 ORTHO05D005588 8.8e-93 344.0 215 79.5
unitig_749.g13387 Utricularia gibba HOM05D004309 ORTHO05D005588 1.5e-92 343.2 216 78.7
Sp3g14970 Schrenkiella parvula HOM05D004309 ORTHO05D005588 2.4e-90 335.9 221 75.1
SEGI_31265 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 4.1e-90 335.1 213 78.9
Thhalv10021471m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 5.4e-90 334.7 221 74.2
Zm00001eb063500 Zea mays HOM05D004309 ORTHO05D005588 5.4e-90 334.7 227 72.7
BcaB04g18345 Brassica carinata HOM05D004309 ORTHO05D005588 9.2e-90 334.0 214 78.5
Zm00001eb053490 Zea mays HOM05D004309 ORTHO05D005588 1.6e-89 333.2 227 72.7
Aa31LG10G6200 Aethionema arabicum HOM05D004309 ORTHO05D005588 2.0e-89 332.8 271 64.9
EL10Ac3g06636 Beta vulgaris HOM05D004309 ORTHO05D005588 2.0e-89 332.8 206 77.7
A08p12080 Brassica napus HOM05D004309 ORTHO05D005588 2.7e-89 332.4 223 74.9
BraA08t33199Z Brassica rapa HOM05D004309 ORTHO05D005588 2.7e-89 332.4 223 74.9
AL3G29630 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 3.5e-89 332.0 223 74.4
BcaC09g48622 Brassica carinata HOM05D004309 ORTHO05D005588 7.7e-89 330.9 221 73.3
BolC1t04737H Brassica oleracea HOM05D004309 ORTHO05D005588 7.7e-89 330.9 221 73.3
Carub.0003s1643 Capsella rubella HOM05D004309 ORTHO05D005588 7.7e-89 330.9 221 73.3
A01p37620 Brassica napus HOM05D004309 ORTHO05D005588 1.0e-88 330.5 221 72.9
Aa31LG8G3800 Aethionema arabicum HOM05D004309 ORTHO05D005588 1.7e-88 329.7 223 73.1
MSTRG.24800 Avicennia marina HOM05D004309 ORTHO05D005588 1.7e-88 329.7 212 75.0
C01p47650 Brassica napus HOM05D004309 ORTHO05D005588 1.7e-88 329.7 221 72.9
BraA01t03822Z Brassica rapa HOM05D004309 ORTHO05D005588 2.9e-88 328.9 221 72.4
TWI09G0267 Tripterygium wilfordii HOM05D004309 ORTHO05D005588 8.6e-88 327.4 219 78.1
Os03g0829000 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 1.1e-87 327.0 223 74.4
Oeu053993.1 Olea europaea HOM05D004309 ORTHO05D005588 3.3e-87 325.5 262 65.6
Nn3g21534 Nelumbo nucifera HOM05D004309 ORTHO05D005588 8.0e-86 320.9 219 78.1
Lj6A680G88 Lonicera japonica HOM05D004309 ORTHO05D005588 2.6e-84 315.8 221 72.4
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 1.7e-83 313.2 188 84.0
AagrBONN_evm.TU.Sc2ySwM_344.4111 Anthoceros agrestis HOM05D004309 ORTHO05D005588 2.9e-83 312.4 222 69.4
Mapoly0093s0048 Marchantia polymorpha HOM05D004309 ORTHO05D005588 2.7e-81 305.8 211 73.0
CBR_g26355 Chara braunii HOM05D004309 ORTHO05D005588 5.0e-80 301.6 213 70.0
AUR62001364 Chenopodium quinoa HOM05D004309 ORTHO05D005588 5.6e-79 298.1 217 68.2
AUR62025637 Chenopodium quinoa HOM05D004309 ORTHO05D005588 1.2e-78 297.0 219 67.6
EL10Ac7g18188 Beta vulgaris HOM05D004309 ORTHO05D005588 6.2e-78 294.7 216 67.1
Ah.08g217630 Amaranthus hybridus HOM05D004309 ORTHO05D005588 5.2e-77 291.6 221 67.4
Pp3c9_26130 Physcomitrium patens HOM05D004309 ORTHO05D005588 5.2e-77 291.6 218 66.1
HPP92_010660 Vanilla planifolia HOM05D004309 ORTHO05D005588 1.9e-74 283.1 176 80.1
AUR62018079 Chenopodium quinoa HOM05D004309 ORTHO05D005588 1.2e-73 280.4 182 73.6
SMO347G0543 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 1.7e-67 260.0 217 62.2
FAN07G2872 Fragaria x ananassa HOM05D004309 ORTHO05D005588 5.2e-61 238.4 141 83.0
PRCOL_00005024 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 1.3e-56 223.8 229 50.7
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 1.1e-55 220.7 126 87.3
Cpa.g.sc50.169 Carica papaya HOM05D004309 ORTHO05D005588 9.6e-55 217.6 152 73.0
FAN12G1798 Fragaria x ananassa HOM05D004309 ORTHO05D005588 2.6e-52 209.5 120 86.7
Peaxi162Scf00065g01425 Petunia axillaris HOM05D004309 ORTHO05D005588 3.4e-52 209.1 125 82.4
Eucgr.C01444 Eucalyptus grandis HOM05D004309 ORTHO05D005588 3.8e-51 205.7 125 80.0
QL06p010208 Quercus lobata HOM05D004309 ORTHO05D005588 8.4e-51 204.5 132 82.6
Duzib151G0762 Durio zibethinus HOM05D004309 ORTHO05D005588 5.3e-45 185.3 153 64.1
Sc26g0002580 Simmondsia chinensis HOM05D004309 ORTHO05D005588 2.2e-43 179.9 124 70.2
Thhalv10026938m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 2.3e-40 169.9 117 74.4
AT3G16700 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 3.9e-40 169.1 108 75.0
Ciclev10006277m.g Citrus clementina HOM05D004309 ORTHO05D005588 4.8e-38 162.2 91 85.7
Hma1.2p1_0078F.1_g040630 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 6.4e-35 151.8 91 83.5
Haze_27427 Corylus avellana HOM05D004309 ORTHO05D005588 5.5e-34 148.7 204 42.6
Cfa022490 Carpinus fangiana HOM05D004309 ORTHO05D005588 1.0e-32 144.4 166 45.8
CARHR091950 Cardamine hirsuta HOM05D004309 ORTHO05D005588 8.7e-32 141.4 91 74.7
Ciclev10006783m.g Citrus clementina HOM05D004309 ORTHO05D005588 2.5e-31 139.8 94 74.5
SMO353G0001 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 6.2e-30 135.2 218 37.6
Os03g0421700 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 1.8e-29 133.7 94 72.3
SEGI_02276 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 3.1e-29 132.9 189 38.6
ATR0326G053 Amborella trichopoda HOM05D004309 ORTHO05D005588 1.2e-28 131.0 77 83.1
Cre12.g549450 Chlamydomonas reinhardtii HOM05D004309 ORTHO05D005588 4.5e-28 129.0 190 42.6
Pp3c6_20080 Physcomitrium patens HOM05D004309 ORTHO05D005588 5.8e-28 128.6 215 36.7
Haze_27486 Corylus avellana HOM05D004309 ORTHO05D005588 1.0e-27 127.9 213 37.6
Pp3s34_290 Physcomitrium patens HOM05D000879 ORTHO05D000265 4.9e-27 125.6 212 37.7
MCO13G238 Micromonas commoda HOM05D004309 ORTHO05D005588 1.3e-24 117.5 194 38.1
AUR62024358 Chenopodium quinoa HOM05D002697 ORTHO05D003087 8.7e-24 114.8 71 74.6
PRCOL_00000256 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 1.3e-22 110.9 204 36.3
RcHm_v2.0_Chr4g0423191 Rosa chinensis HOM05D004309 ORTHO05D005588 2.1e-22 110.2 74 77.0
Actinidia27753 Actinidia chinensis HOM05D004309 ORTHO05D005588 9.0e-21 104.8 88 62.5
AagrBONN_evm.TU.Sc2ySwM_368.471 Anthoceros agrestis HOM05D004309 ORTHO05D005588 9.0e-21 104.8 170 34.7
Peaxi162Scf00454g00328 Petunia axillaris HOM05D004309 ORTHO05D005588 1.2e-20 104.4 66 74.2
Lsat_1_v5_gn_3_26221 Lactuca sativa HOM05D004309 ORTHO05D005588 2.6e-20 103.2 83 65.1
Prupe.1G124800 Prunus persica HOM05D004309 ORTHO05D005588 1.3e-19 100.9 64 79.7
BcaC01g03621 Brassica carinata HOM05D004309 ORTHO05D005588 3.8e-19 99.4 93 59.1
Zm00001eb065520 Zea mays HOM05D002744 ORTHO05D008989 8.5e-19 98.2 67 70.1
Lsat_1_v5_gn_8_151620 Lactuca sativa HOM05D004309 ORTHO05D012139 3.2e-18 96.3 95 60.0
GSVIVG01010688001 Vitis vinifera HOM05D004309 ORTHO05D005588 9.3e-18 94.7 63 71.4
Zm00001eb419610 Zea mays HOM05D004309 ORTHO05D005588 7.9e-17 91.7 68 66.2
MD04G1020300 Malus domestica HOM05D004309 ORTHO05D005588 1.5e-15 87.4 58 74.1
Peaxi162Scf00267g00046 Petunia axillaris HOM05D004309 ORTHO05D005588 1.6e-14 84.0 51 76.5
Zm00001eb097870 Zea mays HOM05D004309 ORTHO05D026220 5.3e-13 79.0 68 58.8
Zm00001eb282740 Zea mays HOM05D004309 ORTHO05D005588 6.9e-13 78.6 66 62.1
Zm00001eb085600 Zea mays HOM05D001297 ORTHO05D001135 9.0e-13 78.2 65 60.0
Zm00001eb194540 Zea mays HOM05D004309 ORTHO05D026220 1.2e-12 77.8 64 60.9
BolC3t17332H Brassica oleracea HOM05D004309 ORTHO05D005588 1.5e-12 77.4 92 50.0
Zm00001eb423340 Zea mays HOM05D004309 ORTHO05D026220 2.6e-12 76.6 59 64.4
Cpa.g.sc50.168 Carica papaya HOM05D004309 ORTHO05D005588 3.4e-12 76.3 49 75.5
C03p50400 Brassica napus HOM05D004309 ORTHO05D005588 7.7e-12 75.1 92 47.8
Zm00001eb024340 Zea mays HOM05D004309 ORTHO05D026220 9.4e-10 68.2 57 61.4
Zm00001eb170420 Zea mays HOM05D004309 ORTHO05D026220 6.1e-09 65.5 48 66.7
RcHm_v2.0_Chr0c32g0501491 Rosa chinensis HOM05D004309 ORTHO05D005588 1.8e-08 63.9 39 79.5


User provided reference genes

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