Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p010168 Quercus lobata HOM05D005069 ORTHO05D006024 0.0e+00 2260.7 1135 100.0
Cfa015421 Carpinus fangiana HOM05D005069 ORTHO05D006024 0.0e+00 1818.1 1138 80.1
CiPaw.02G080300 Carya illinoinensis HOM05D005069 ORTHO05D006024 0.0e+00 1796.2 1140 79.1
Haze_01171 Corylus avellana HOM05D005069 ORTHO05D006024 0.0e+00 1667.5 1163 73.9
Prupe.1G132400 Prunus persica HOM05D005069 ORTHO05D006024 0.0e+00 1583.9 1140 70.4
RcHm_v2.0_Chr4g0423171 Rosa chinensis HOM05D005069 ORTHO05D006024 0.0e+00 1543.5 1130 68.5
GSVIVG01035118001 Vitis vinifera HOM05D005069 ORTHO05D006024 0.0e+00 1475.7 1167 65.5
FAN12G2768 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1471.8 1184 63.5
FAN07G0695 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1458.4 1049 68.5
Duzib151G0715 Durio zibethinus HOM05D005069 ORTHO05D006024 0.0e+00 1449.1 1086 66.1
Phvul.009G250200 Phaseolus vulgaris HOM05D005069 ORTHO05D006024 0.0e+00 1442.9 1054 67.2
Glyma.09G042600 Glycine max HOM05D005069 ORTHO05D006024 0.0e+00 1434.5 1057 67.4
Ca_10630_v3 Cicer arietinum L. HOM05D005069 ORTHO05D006024 0.0e+00 1430.2 1107 64.6
TWI09G0094 Tripterygium wilfordii HOM05D005069 ORTHO05D006024 0.0e+00 1419.8 1146 64.0
VMungo1309G0850 Vigna mungo HOM05D005069 ORTHO05D006024 0.0e+00 1417.1 1054 66.1
TPR.G14183 Trifolium pratense HOM05D005069 ORTHO05D006024 0.0e+00 1410.6 1092 64.5
Lj6g0024094 Lotus japonicus HOM05D005069 ORTHO05D006024 0.0e+00 1406.0 1058 65.6
Medtr2g435850 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1405.6 1063 65.4
Medtr2g436170 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1405.6 1063 65.4
Actinidia40297 Actinidia chinensis HOM05D005069 ORTHO05D006024 0.0e+00 1404.0 1130 63.5
Atru.chr4.2893 Acer truncatum HOM05D005069 ORTHO05D006024 0.0e+00 1396.7 1115 63.4
Medtr5g020160 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1386.7 1074 64.7
Ciclev10007186m.g Citrus clementina HOM05D005069 ORTHO05D006024 0.0e+00 1384.4 1118 62.6
Psat1g155720 Pisum sativum HOM05D005069 ORTHO05D006024 0.0e+00 1383.6 1115 61.6
Sabra07G0100800 Salix brachista HOM05D005069 ORTHO05D006024 0.0e+00 1377.1 1143 61.1
Cpa.g.sc50.170 Carica papaya HOM05D005069 ORTHO05D006024 0.0e+00 1369.4 1131 62.6
Potri.007G124900 Populus trichocarpa HOM05D005069 ORTHO05D006024 0.0e+00 1366.7 1140 60.7
FAN17G1646 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1352.4 1066 64.4
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 0.0e+00 1344.7 1042 64.0
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1343.6 998 66.5
Lj6C680G7 Lonicera japonica HOM05D005069 ORTHO05D006024 0.0e+00 1336.6 1153 59.8
Gorai.005G061500 Gossypium raimondii HOM05D005069 ORTHO05D006024 0.0e+00 1320.1 1044 61.8
Eucgr.H03956 Eucalyptus grandis HOM05D005069 ORTHO05D006024 0.0e+00 1312.0 1086 60.8
Gohir.A02G050600 Gossypium hirsutum HOM05D005069 ORTHO05D006024 0.0e+00 1309.3 1031 61.8
PGR004G1871 Punica granatum HOM05D005069 ORTHO05D006024 0.0e+00 1304.7 1136 57.7
Aqoxy2G02916 Aquilegia oxysepala HOM05D005069 ORTHO05D006024 0.0e+00 1300.0 1131 58.0
Rhsim04G0224900 Rhododendron simsii HOM05D005069 ORTHO05D006024 0.0e+00 1298.5 1131 58.1
arahy.Tifrunner.gnm1.ann1.9CA2Y1 Arachis hypogaea HOM05D005069 ORTHO05D006024 0.0e+00 1291.6 1039 61.9
Nitab4.5_0000695g0020 Nicotiana tabacum HOM05D005069 ORTHO05D006024 0.0e+00 1278.1 1134 56.6
arahy.Tifrunner.gnm1.ann1.I5RJVP Arachis hypogaea HOM05D005069 ORTHO05D006024 0.0e+00 1274.6 1056 60.8
Manes.04G040225 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1271.5 1093 59.6
THA.LOC104818914 Tarenaya hassleriana HOM05D005069 ORTHO05D006024 0.0e+00 1268.1 1131 58.2
Glyma.15G192400 Glycine max HOM05D005069 ORTHO05D006024 0.0e+00 1259.2 924 67.1
vmacro08181 Vaccinium macrocarpon HOM05D005069 ORTHO05D006024 0.0e+00 1255.0 1128 56.7
Manes.04G045344 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1246.9 1133 57.4
Nitab4.5_0006814g0030 Nicotiana tabacum HOM05D005069 ORTHO05D006024 0.0e+00 1243.0 1157 54.6
Peaxi162Scf00065g01432 Petunia axillaris HOM05D005069 ORTHO05D006024 0.0e+00 1225.3 1104 56.3
AL8G22670 Arabidopsis lyrata HOM05D005069 ORTHO05D006024 0.0e+00 1220.3 1049 58.8
Manes.04G046000 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1214.9 1141 56.5
Manes.04G046272 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1214.9 1061 58.6
CAN.G1639.1 Capsicum annuum HOM05D005069 ORTHO05D006024 0.0e+00 1212.6 1098 55.4
PSO170G2573 Papaver somniferum HOM05D005069 ORTHO05D006024 0.0e+00 1210.7 1098 55.9
AT5G49150 Arabidopsis thaliana HOM05D005069 ORTHO05D006024 0.0e+00 1207.2 1045 58.2
Carub.0008s0895 Capsella rubella HOM05D005069 ORTHO05D006024 0.0e+00 1205.7 1047 58.5
PSO407G0255 Papaver somniferum HOM05D005069 ORTHO05D006024 0.0e+00 1204.5 1104 55.3
Dinv29734 Davidia involucrata HOM05D005069 ORTHO05D006024 0.0e+00 1198.3 873 67.6
AUR62032020 Chenopodium quinoa HOM05D005069 ORTHO05D006024 0.0e+00 1184.5 1124 54.4
AUR62018094 Chenopodium quinoa HOM05D005069 ORTHO05D006024 0.0e+00 1181.8 1102 54.4
BraA02t08774Z Brassica rapa HOM05D005069 ORTHO05D006024 0.0e+00 1180.2 1057 57.0
A02p37900 Brassica napus HOM05D005069 ORTHO05D006024 0.0e+00 1175.2 1045 57.9
BolC2t11776H Brassica oleracea HOM05D005069 ORTHO05D006024 0.0e+00 1172.1 1053 57.1
BcaC03g17701 Brassica carinata HOM05D005069 ORTHO05D006024 0.0e+00 1170.6 1058 56.7
Solyc01g066510.3 Solanum lycopersicum HOM05D005069 ORTHO05D006024 0.0e+00 1170.6 1143 52.9
C02p57050 Brassica napus HOM05D007614 ORTHO05D009538 0.0e+00 1169.1 1052 56.9
Thhalv10005444m.g Eutrema salsugineum HOM05D005069 ORTHO05D006024 0.0e+00 1162.5 983 58.7
SGA_v2.0_scaffold67G22603 Striga asiatica HOM05D005069 ORTHO05D006024 0.0e+00 1160.6 1018 56.9
Aa31LG11G8390 Aethionema arabicum HOM05D005069 ORTHO05D006024 0.0e+00 1158.7 1042 56.0
FvH4_4g18570 Fragaria vesca HOM05D005069 ORTHO05D006024 0.0e+00 1144.0 873 66.2
DCAR_023295 Daucus carota HOM05D005069 ORTHO05D006024 0.0e+00 1139.8 1141 52.8
Migut.G00133 Erythranthe guttata HOM05D005069 ORTHO05D006024 0.0e+00 1135.6 1065 54.6
Cc03_g01590 Coffea canephora HOM05D005069 ORTHO05D006024 0.0e+00 1134.4 953 59.7
EL10Ac3g06634 Beta vulgaris HOM05D005069 ORTHO05D006024 0.0e+00 1127.9 976 56.5
CANSAT78G0554 Cannabis sativa HOM05D005069 ORTHO05D006024 0.0e+00 1107.0 785 68.8
SalBow2G1933 Salvia bowleyana HOM05D005069 ORTHO05D006024 0.0e+00 1099.3 1072 52.9
Ah.00g238040 Amaranthus hybridus HOM05D005069 ORTHO05D006024 0.0e+00 1094.3 1055 53.1
CARHR186440 Cardamine hirsuta HOM05D005069 ORTHO05D006024 0.0e+00 1077.4 910 59.3
Nn3g21533 Nelumbo nucifera HOM05D005069 ORTHO05D006024 4.7e-307 1058.1 875 61.8
Sp2g19500 Schrenkiella parvula HOM05D005069 ORTHO05D006024 3.9e-306 1055.0 896 59.0
CSS0043552 Camellia sinensis var. sinensis HOM05D005069 ORTHO05D006024 1.8e-303 1046.2 918 59.2
Hund20526 Selenicereus undatus HOM05D005069 ORTHO05D006024 1.1e-300 1036.9 1187 47.5
Lsat_1_v5_gn_6_96300 Lactuca sativa HOM05D005069 ORTHO05D006024 3.2e-292 1008.8 1117 48.3
ATR0580G217 Amborella trichopoda HOM05D005069 ORTHO05D006024 4.8e-288 995.0 1068 49.1
Lalb_Chr15g0086031 Lupinus albus HOM05D005069 ORTHO05D006024 1.6e-286 989.9 769 64.9
MBI15_g07480_MAGBIO Magnolia biondii HOM05D005069 ORTHO05D006024 4.2e-284 981.9 1113 49.0
TAR636G0683 Trochodendron aralioides HOM05D005069 ORTHO05D006024 1.3e-277 960.3 693 68.4
HPP92_022450 Vanilla planifolia HOM05D005069 ORTHO05D006024 4.7e-275 951.8 1053 48.9
Migut.G00081 Erythranthe guttata HOM05D005069 ORTHO05D006024 1.1e-260 904.0 955 50.7
HanXRQChr03g0089541 Helianthus annuus HOM05D005069 ORTHO05D006024 2.9e-256 889.4 993 47.6
Oeu035688.1 Olea europaea HOM05D005069 ORTHO05D006024 2.3e-253 879.8 728 60.9
Manes.04G046718 Manihot esculenta HOM05D005069 ORTHO05D006024 1.5e-241 840.5 672 62.5
Sopen01g028200 Solanum pennellii HOM05D005069 ORTHO05D006024 1.1e-234 817.8 736 55.7
Zm00001eb099800 Zea mays HOM05D005069 ORTHO05D006024 3.0e-229 799.7 1114 40.9
Hma1.2p1_0078F.1_g040620 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 2.8e-227 793.1 552 70.1
ECA240G4151 Erigeron canadensis HOM05D005069 ORTHO05D006024 4.0e-226 789.3 1074 42.3
Sc13g0003270 Simmondsia chinensis HOM05D005069 ORTHO05D006024 1.1e-223 781.2 641 60.2
CDE02G3967 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 2.2e-184 650.6 650 51.4
Thecc.04G288100 Theobroma cacao HOM05D005069 ORTHO05D006024 2.9e-184 650.2 500 64.8
HanXRQChr03g0089561 Helianthus annuus HOM05D005069 ORTHO05D006024 6.5e-176 622.5 597 53.8
TAR636G0082 Trochodendron aralioides HOM05D005069 ORTHO05D006024 3.7e-147 526.9 403 66.0
Thecc.04G288200 Theobroma cacao HOM05D005069 ORTHO05D006024 6.2e-142 509.6 370 67.0
SHI26096 Sapria himalayana HOM05D005069 ORTHO05D006024 1.3e-115 422.2 381 57.0
Sc13g0003280 Simmondsia chinensis HOM05D005069 ORTHO05D006024 1.6e-113 415.2 348 59.2
SMO174G0176 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 1.1e-85 322.8 1065 26.5
Gohir.D02G055533 Gossypium hirsutum HOM05D005069 ORTHO05D006024 9.0e-85 319.7 220 66.4
Manes.04G046727 Manihot esculenta HOM05D005069 ORTHO05D006024 1.2e-81 309.3 220 66.8
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 2.6e-76 291.6 226 61.1
HanXRQChr03g0089551 Helianthus annuus HOM05D005069 ORTHO05D006024 5.5e-74 283.9 319 47.3
Lalb_Chr15g0086041 Lupinus albus HOM05D005069 ORTHO05D006024 2.2e-70 271.9 189 69.3
Sabra07G0101000 Salix brachista HOM05D005069 ORTHO05D006024 9.1e-69 266.5 259 52.1
TPR.G29612 Trifolium pratense HOM05D005069 ORTHO05D006024 1.1e-66 259.6 206 61.7
Hma1.2p1_1659F.1_g296120 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 8.5e-59 233.4 179 64.2
Hma1.2p1_0139F.1_g063315 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 9.4e-58 229.9 179 64.2
Hma1.2p1_0139F.1_g063320 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 1.4e-56 226.1 179 63.1
Gohir.D02G055566 Gossypium hirsutum HOM05D005069 ORTHO05D006024 1.6e-52 212.6 181 59.7
AagrBONN_evm.TU.Sc2ySwM_340.311 Anthoceros agrestis HOM05D005069 ORTHO05D006024 7.2e-50 203.8 912 24.9
SHI34756 Sapria himalayana HOM05D005069 ORTHO05D006024 1.4e-48 199.5 351 36.2
SHI26092 Sapria himalayana HOM05D005069 ORTHO05D006024 1.8e-48 199.1 130 70.8
Os09g0424701 Oryza sativa ssp. japonica HOM05D005069 ORTHO05D006024 1.4e-40 172.9 340 33.5
Lalb_Chr15g0086021 Lupinus albus HOM05D005069 ORTHO05D006024 7.5e-39 167.2 129 60.5
Lsat_1_v5_gn_8_152101 Lactuca sativa HOM05D005069 ORTHO05D006024 1.3e-38 166.4 154 52.6
CDE02G3730 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 2.7e-36 158.7 246 40.2
SMO347G0277 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 4.6e-36 157.9 596 25.8
AagrBONN_evm.TU.Sc2ySwM_228.988 Anthoceros agrestis HOM05D005069 ORTHO05D006024 7.8e-36 157.1 994 22.4
Lsat_1_v5_gn_1_63401 Lactuca sativa HOM05D001329 ORTHO05D004946 2.3e-35 155.6 132 56.1
SHI26089 Sapria himalayana HOM05D005069 ORTHO05D006024 3.3e-34 151.8 126 57.1
Lsat_1_v5_gn_9_94461 Lactuca sativa HOM05D001329 ORTHO05D004946 9.5e-34 150.2 134 56.7
Mapoly0125s0024 Marchantia polymorpha HOM05D005069 ORTHO05D006024 1.7e-30 139.4 453 23.0
BcaC03g17698 Brassica carinata HOM05D005069 ORTHO05D006024 1.1e-26 126.7 135 47.4
Hma1.2p1_0078F.1_g040610 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 5.6e-26 124.4 140 47.1
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 9.8e-23 113.6 93 54.8
Lsat_1_v5_gn_2_33340 Lactuca sativa HOM05D005069 ORTHO05D006024 6.4e-22 110.9 84 57.1
AagrBONN_evm.TU.Sc2ySwM_344.2936 Anthoceros agrestis HOM05D005069 ORTHO05D006024 1.2e-20 106.7 1022 20.2
SMO109G0005 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 1.2e-20 106.7 344 27.0
TPR.G9115 Trifolium pratense HOM05D005069 ORTHO05D006024 3.5e-20 105.1 82 61.0
TPR.G8658 Trifolium pratense HOM05D005069 ORTHO05D006024 9.5e-18 97.1 77 61.0
BcaC06g30714 Brassica carinata HOM05D005069 ORTHO05D006024 2.8e-17 95.5 92 47.8
AagrBONN_evm.TU.Sc2ySwM_340.310 Anthoceros agrestis HOM05D005069 ORTHO05D006024 6.2e-17 94.4 356 26.7
AagrBONN_evm.TU.Sc2ySwM_340.307 Anthoceros agrestis HOM05D005069 ORTHO05D006024 5.2e-16 91.3 236 29.2
SMO111G0104 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 3.4e-15 88.6 577 22.9
BcaC05g26383 Brassica carinata HOM05D005069 ORTHO05D006024 1.2e-12 80.1 58 63.8
C05p24130 Brassica napus HOM05D005069 ORTHO05D006024 3.5e-12 78.6 58 62.1
CARHR286020 Cardamine hirsuta HOM05D005069 ORTHO05D006024 6.0e-12 77.8 100 44.0
Mapoly0125s0023 Marchantia polymorpha HOM05D005069 ORTHO05D006024 7.3e-10 70.9 395 22.8
CARHR285990 Cardamine hirsuta HOM05D005069 ORTHO05D006024 1.2e-09 70.1 57 56.1
Lsat_1_v5_gn_4_4660 Lactuca sativa HOM05D003976 ORTHO05D004711 8.1e-09 67.4 86 41.9
Lsat_1_v5_gn_9_49740 Lactuca sativa HOM05D001718 ORTHO05D007949 3.1e-08 65.5 64 53.1
Lsat_1_v5_gn_4_48740 Lactuca sativa HOM05D005359 ORTHO05D006431 1.2e-07 63.5 45 62.2
CARHR286000 Cardamine hirsuta HOM05D005069 ORTHO05D006024 4.4e-07 61.6 54 55.6
Lsat_1_v5_gn_6_63420 Lactuca sativa HOM05D003976 ORTHO05D004711 5.8e-07 61.2 58 53.4
Actinidia18537 Actinidia chinensis HOM05D028264 ORTHO05D057578 4.9e-06 58.2 83 42.2


User provided reference genes

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