Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p009778 Quercus lobata HOM05D003565 ORTHO05D003943 3.9e-67 258.1 136 100.0
QL06p009796 Quercus lobata HOM05D003565 ORTHO05D003943 3.9e-67 258.1 136 100.0
QL06p009717 Quercus lobata HOM05D003565 ORTHO05D003943 5.1e-67 257.7 136 99.3
QL93p0060_0003 Quercus lobata HOM05D003565 ORTHO05D003943 5.1e-67 257.7 136 99.3
QL93p0060_0027 Quercus lobata HOM05D003565 ORTHO05D003943 1.6e-65 252.7 136 97.8
QL06p009739 Quercus lobata HOM05D003565 ORTHO05D003943 3.4e-63 245.0 136 95.6
QL06p009754 Quercus lobata HOM05D003565 ORTHO05D003943 1.9e-61 239.2 136 93.4
QL06p009701 Quercus lobata HOM05D003565 ORTHO05D003943 2.4e-61 238.8 136 93.4
QL93p0060_0019 Quercus lobata HOM05D003565 ORTHO05D003943 2.4e-61 238.8 136 93.4
QL93p0060_0047 Quercus lobata HOM05D003565 ORTHO05D003943 1.2e-60 236.5 136 92.6
QL06p009790 Quercus lobata HOM05D003565 ORTHO05D003943 1.3e-59 233.0 136 91.2
QL06p009664 Quercus lobata HOM05D003565 ORTHO05D003943 1.1e-48 196.8 136 79.4
QL06p009725 Quercus lobata HOM05D003565 ORTHO05D003943 4.0e-48 194.9 110 90.9
QL06p009759 Quercus lobata HOM05D003565 ORTHO05D003943 1.9e-29 132.9 71 98.6
Thecc.04G287000 Theobroma cacao HOM05D003565 ORTHO05D003943 1.7e-22 109.8 110 58.2
Actinidia28386 Actinidia chinensis HOM05D003565 ORTHO05D003943 2.9e-22 109.0 109 53.2
Dinv29764 Davidia involucrata HOM05D003565 ORTHO05D003943 6.5e-22 107.8 142 48.6
Rhsim02G0008000 Rhododendron simsii HOM05D003565 ORTHO05D003943 1.4e-21 106.7 109 56.0
SalBow2G2654 Salvia bowleyana HOM05D003565 ORTHO05D003943 5.5e-21 104.8 107 57.0
vmacro15222 Vaccinium macrocarpon HOM05D003565 ORTHO05D003943 7.2e-21 104.4 110 55.5
Hma1.2p1_1807F.1_g303350 Hydrangea macrophylla HOM05D003565 ORTHO05D003943 1.2e-20 103.6 104 57.7
CAN.G261.3 Capsicum annuum HOM05D003565 ORTHO05D003943 1.0e-19 100.5 113 54.9
Peaxi162Scf00246g01219 Petunia axillaris HOM05D003565 ORTHO05D003943 1.0e-19 100.5 111 52.3
Cfa015405 Carpinus fangiana HOM05D003565 ORTHO05D003943 1.4e-19 100.1 113 53.1
Prupe.1G133700 Prunus persica HOM05D003565 ORTHO05D003943 2.3e-19 99.4 142 46.5
CiPaw.02G081300 Carya illinoinensis HOM05D003565 ORTHO05D003943 3.0e-19 99.0 132 48.5
MSTRG.10106 Avicennia marina HOM05D003565 ORTHO05D003943 5.1e-19 98.2 108 51.9
FAN12G1574 Fragaria x ananassa HOM05D003565 ORTHO05D003943 5.1e-19 98.2 147 45.6
FvH4_4g18480 Fragaria vesca HOM05D003565 ORTHO05D003943 6.7e-19 97.8 147 44.9
FAN12G0358 Fragaria x ananassa HOM05D003565 ORTHO05D003943 6.7e-19 97.8 147 45.6
Cpa.g.sc16.191 Carica papaya HOM05D003565 ORTHO05D003943 8.8e-19 97.4 110 51.8
Duzib151G1023 Durio zibethinus HOM05D003565 ORTHO05D003943 1.1e-18 97.1 105 56.2
Gohir.A10G165200 Gossypium hirsutum HOM05D003565 ORTHO05D003943 1.9e-18 96.3 106 53.8
SGA_v2.0_scaffold18G08345 Striga asiatica HOM05D003565 ORTHO05D003943 1.9e-18 96.3 109 51.4
GSVIVG01035140001 Vitis vinifera HOM05D003565 ORTHO05D003943 1.9e-18 96.3 104 52.9
FAN17G2113 Fragaria x ananassa HOM05D003565 ORTHO05D003943 4.3e-18 95.1 105 49.5
Potri.010G012400 Populus trichocarpa HOM05D003565 ORTHO05D003943 4.3e-18 95.1 110 53.6
Gorai.011G191400 Gossypium raimondii HOM05D003565 ORTHO05D003943 5.7e-18 94.7 145 46.2
PGR004G2879 Punica granatum HOM05D003565 ORTHO05D003943 5.7e-18 94.7 108 52.8
COL.COLO4_13836 Corchorus olitorius HOM05D003565 ORTHO05D003943 7.4e-18 94.4 104 53.8
PGSC0003DMG400011334 Solanum tuberosum HOM05D003565 ORTHO05D003943 7.4e-18 94.4 104 53.8
Sabra10G0007900 Salix brachista HOM05D003565 ORTHO05D003943 9.7e-18 94.0 110 53.6
THA.LOC104820292 Tarenaya hassleriana HOM05D003565 ORTHO05D003943 9.7e-18 94.0 114 50.0
AL3G29580 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 1.3e-17 93.6 108 51.9
AT3G16660 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 2.2e-17 92.8 108 51.9
CsaV3_3G014750 Cucumis sativus L. HOM05D003565 ORTHO05D003943 2.2e-17 92.8 110 48.2
Migut.O00777 Erythranthe guttata HOM05D003565 ORTHO05D003943 2.2e-17 92.8 147 44.2
Sopen01g028300 Solanum pennellii HOM05D003565 ORTHO05D003943 2.2e-17 92.8 99 54.5
Carub.0003s1639 Capsella rubella HOM05D003565 ORTHO05D003943 3.7e-17 92.0 108 51.9
CiPaw.02G081400 Carya illinoinensis HOM05D003565 ORTHO05D003943 3.7e-17 92.0 140 44.3
CiPaw.02G081500 Carya illinoinensis HOM05D003565 ORTHO05D003943 3.7e-17 92.0 140 44.3
Gohir.D10G171300 Gossypium hirsutum HOM05D003565 ORTHO05D003943 6.3e-17 91.3 145 46.2
MBI18_g24867_MAGBIO Magnolia biondii HOM05D003565 ORTHO05D003943 6.3e-17 91.3 101 52.5
Oeu064291.1 Olea europaea HOM05D003565 ORTHO05D003943 6.3e-17 91.3 114 49.1
SalBow2G0621 Salvia bowleyana HOM05D003565 ORTHO05D003943 6.3e-17 91.3 105 50.5
Haze_01182 Corylus avellana HOM05D003565 ORTHO05D003943 8.2e-17 90.9 96 56.2
Solyc01g066680.3 Solanum lycopersicum HOM05D003565 ORTHO05D003943 1.1e-16 90.5 98 54.1
Actinidia14291 Actinidia chinensis HOM05D003565 ORTHO05D003943 1.4e-16 90.1 140 45.0
CARHR091910 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.4e-16 90.1 101 54.5
PGR004G0277 Punica granatum HOM05D003565 ORTHO05D003943 1.8e-16 89.7 108 51.9
ClCG05G006170 Citrullus lanatus HOM05D003565 ORTHO05D003943 2.4e-16 89.4 109 45.9
RcHm_v2.0_Chr4g0422991 Rosa chinensis HOM05D003565 ORTHO05D003943 5.3e-16 88.2 146 41.8
PGR004G2171 Punica granatum HOM05D003565 ORTHO05D003943 9.1e-16 87.4 107 51.4
ECA240G0767 Erigeron canadensis HOM05D003565 ORTHO05D003943 1.2e-15 87.0 111 45.9
CiPaw.02G059200 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.5e-15 86.7 105 48.6
MELO3C035189.2 Cucumis melo HOM05D003565 ORTHO05D003943 1.5e-15 86.7 97 51.5
CiPaw.02G081600 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.6e-15 85.9 119 46.2
Sed0004032 Sechium edule HOM05D003565 ORTHO05D003943 2.6e-15 85.9 106 44.3
DCAR_027062 Daucus carota HOM05D003565 ORTHO05D003943 4.5e-15 85.1 100 50.0
DCAR_027064 Daucus carota HOM05D003565 ORTHO05D003943 4.5e-15 85.1 100 50.0
Cfa015408 Carpinus fangiana HOM05D003565 ORTHO05D003943 5.9e-15 84.7 144 43.8
HanXRQChr03g0088801 Helianthus annuus HOM05D003565 ORTHO05D003943 5.9e-15 84.7 108 46.3
HanXRQChr08g0214541 Helianthus annuus HOM05D003565 ORTHO05D003943 7.7e-15 84.3 105 53.3
TAR362G0267 Trochodendron aralioides HOM05D003565 ORTHO05D003943 7.7e-15 84.3 106 46.2
HanXRQChr13g0420001 Helianthus annuus HOM05D003565 ORTHO05D003943 1.0e-14 84.0 111 45.9
CiPaw.02G058900 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.3e-14 83.6 106 49.1
Cc03_g01690 Coffea canephora HOM05D003565 ORTHO05D003943 1.3e-14 83.6 92 50.0
Sed0026730 Sechium edule HOM05D003565 ORTHO05D003943 1.7e-14 83.2 110 44.5
MELO3C006673.2 Cucumis melo HOM05D003565 ORTHO05D003943 2.2e-14 82.8 105 47.6
Aa31LG8G3780 Aethionema arabicum HOM05D003565 ORTHO05D003943 2.9e-14 82.4 104 48.1
Nitab4.5_0000194g0060 Nicotiana tabacum HOM05D003565 ORTHO05D003943 3.8e-14 82.0 137 44.5
CANSAT78G1552 Cannabis sativa HOM05D003565 ORTHO05D003943 8.5e-14 80.9 102 50.0
Cfa021269 Carpinus fangiana HOM05D003565 ORTHO05D003943 8.5e-14 80.9 112 43.8
CSS0008161 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 1.4e-13 80.1 106 46.2
Lsat_1_v5_gn_6_95321 Lactuca sativa HOM05D003565 ORTHO05D003943 1.4e-13 80.1 111 45.0
CiPaw.02G059300 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.5e-13 79.3 119 46.2
Psat1g155160 Pisum sativum HOM05D003565 ORTHO05D003943 2.5e-13 79.3 106 41.5
Lalb_Chr15g0083411 Lupinus albus HOM05D003565 ORTHO05D003943 5.5e-13 78.2 143 39.9
Prupe.1G133600 Prunus persica HOM05D003565 ORTHO05D003943 5.5e-13 78.2 135 42.2
Thhalv10021522m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 7.2e-13 77.8 101 46.5
MD00G1127800 Malus domestica HOM05D003565 ORTHO05D003943 7.2e-13 77.8 136 40.4
Medtr2g436350 Medicago truncatula HOM05D003565 ORTHO05D003943 7.2e-13 77.8 102 44.1
BcaC09g48620 Brassica carinata HOM05D003565 ORTHO05D003943 9.4e-13 77.4 106 45.3
CARHR150160 Cardamine hirsuta HOM05D003565 ORTHO05D003943 9.4e-13 77.4 114 48.2
CARHR091930 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.2e-12 77.0 112 45.5
Nitab4.5_0000513g0180 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.2e-12 77.0 114 42.1
CsaV3_6G023960 Cucumis sativus L. HOM05D000549 ORTHO05D001527 1.6e-12 76.6 93 49.5
TPR.G31280 Trifolium pratense HOM05D003565 ORTHO05D003943 1.6e-12 76.6 110 42.7
HanXRQChr08g0214531 Helianthus annuus HOM05D003565 ORTHO05D003943 3.6e-12 75.5 122 44.3
TWI09G1223 Tripterygium wilfordii HOM05D003565 ORTHO05D003943 3.6e-12 75.5 141 41.1
HPP92_006917 Vanilla planifolia HOM05D003565 ORTHO05D003943 3.6e-12 75.5 105 44.8
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 4.7e-12 75.1 94 47.9
HanXRQChr03g0089401 Helianthus annuus HOM05D003565 ORTHO05D003943 4.7e-12 75.1 133 43.6
Nitab4.5_0005362g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 4.7e-12 75.1 108 43.5
AT3G16670 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 6.1e-12 74.7 101 47.5
HanXRQChr03g0088811 Helianthus annuus HOM05D003565 ORTHO05D003943 7.9e-12 74.3 103 43.7
PSO210G5566 Papaver somniferum HOM05D003565 ORTHO05D003943 1.0e-11 73.9 108 47.2
CARHR150150 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.8e-11 73.2 123 43.1
Glyma.09G043500 Glycine max HOM05D003565 ORTHO05D003943 1.8e-11 73.2 109 41.3
Nitab4.5_0000493g0090 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.8e-11 73.2 93 47.3
CARHR091920 Cardamine hirsuta HOM05D003565 ORTHO05D003943 2.3e-11 72.8 123 44.7
AL3G29590 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 3.0e-11 72.4 101 45.5
Nitab4.5_0003949g0040 Nicotiana tabacum HOM05D003565 ORTHO05D003943 3.0e-11 72.4 137 39.4
Lj6g0014140 Lotus japonicus HOM05D003565 ORTHO05D003943 3.9e-11 72.0 144 36.8
Phvul.009G249400 Phaseolus vulgaris HOM05D003565 ORTHO05D003943 3.9e-11 72.0 147 38.1
CsaV3_6G024110 Cucumis sativus L. HOM05D000549 ORTHO05D003943 6.7e-11 71.2 93 47.3
Nitab4.5_0003949g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 6.7e-11 71.2 137 39.4
Carub.0002s1293 Capsella rubella HOM05D003565 ORTHO05D003943 8.8e-11 70.9 99 44.4
RcHm_v2.0_Chr4g0422901 Rosa chinensis HOM05D003565 ORTHO05D003943 8.8e-11 70.9 153 37.9
PSO832G2395 Papaver somniferum HOM05D003565 ORTHO05D003943 1.1e-10 70.5 108 45.4
Zm00001eb111390 Zea mays HOM05D003565 ORTHO05D003943 1.1e-10 70.5 111 42.3
Carub.0003s1640 Capsella rubella HOM05D003565 ORTHO05D003943 1.5e-10 70.1 99 43.4
Ciclev10006885m.g Citrus clementina HOM05D003565 ORTHO05D003943 1.5e-10 70.1 110 42.7
BcaB04g20866 Brassica carinata HOM05D003565 ORTHO05D003943 2.0e-10 69.7 101 43.6
FAN12G0988 Fragaria x ananassa HOM05D003565 ORTHO05D003943 2.0e-10 69.7 150 37.3
Oeu026321.1 Olea europaea HOM05D003565 ORTHO05D003943 2.0e-10 69.7 110 40.9
FvH4_4g18430 Fragaria vesca HOM05D003565 ORTHO05D003943 2.6e-10 69.3 131 39.7
Nitab4.5_0000194g0050 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.6e-10 69.3 125 40.0
VMungo1309G1767 Vigna mungo HOM05D003565 ORTHO05D003943 2.6e-10 69.3 104 41.3
Nitab4.5_0000493g0100 Nicotiana tabacum HOM05D003565 ORTHO05D003943 3.3e-10 68.9 137 38.0
QL06p009817 Quercus lobata HOM05D003565 ORTHO05D003943 3.3e-10 68.9 143 41.3
A01p37210 Brassica napus HOM05D003565 ORTHO05D003943 7.4e-10 67.8 83 48.2
PGR004G2038 Punica granatum HOM05D003565 ORTHO05D003943 7.4e-10 67.8 114 39.5
Os07g0674500 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 1.7e-09 66.6 138 37.0
arahy.Tifrunner.gnm1.ann1.Q570SP Arachis hypogaea HOM05D003565 ORTHO05D003943 2.8e-09 65.9 98 45.9
arahy.Tifrunner.gnm1.ann1.VE1P60 Arachis hypogaea HOM05D003565 ORTHO05D003943 2.8e-09 65.9 98 45.9
A01p37230 Brassica napus HOM05D003565 ORTHO05D003943 2.8e-09 65.9 83 47.0
Os07g0674400 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 2.8e-09 65.9 111 39.6
Oeu027152.1 Olea europaea HOM05D003565 ORTHO05D003943 3.7e-09 65.5 107 43.0
FAN12G2280 Fragaria x ananassa HOM05D003565 ORTHO05D003943 4.8e-09 65.1 149 36.2
HanXRQChr01g0002181 Helianthus annuus HOM05D003565 ORTHO05D003943 4.8e-09 65.1 107 39.3
BcaB04g18928 Brassica carinata HOM05D003565 ORTHO05D003943 6.3e-09 64.7 119 37.8
Oeu027151.1 Olea europaea HOM05D003565 ORTHO05D003943 6.3e-09 64.7 124 41.1
Zm00001eb016410 Zea mays HOM05D003565 ORTHO05D003943 8.2e-09 64.3 101 42.6
Ciclev10006409m.g Citrus clementina HOM05D003565 ORTHO05D003943 1.1e-08 63.9 106 40.6
DCAR_022430 Daucus carota HOM05D003565 ORTHO05D003943 1.1e-08 63.9 120 39.2
Os03g0341600 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 1.8e-08 63.2 106 38.7
HanXRQChr03g0089351 Helianthus annuus HOM05D003565 ORTHO05D003943 2.4e-08 62.8 123 41.5
A03p40060 Brassica napus HOM05D003565 ORTHO05D003943 3.1e-08 62.4 119 38.7
BraA03t13156Z Brassica rapa HOM05D003565 ORTHO05D003943 3.1e-08 62.4 119 38.7
HanXRQChr05g0130321 Helianthus annuus HOM05D003565 ORTHO05D003943 3.1e-08 62.4 125 34.4
DCAR_002472 Daucus carota HOM05D003565 ORTHO05D003943 4.1e-08 62.0 105 41.0
Thhalv10021613m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 5.3e-08 61.6 106 41.5
HanXRQChr03g0089391 Helianthus annuus HOM05D003565 ORTHO05D003943 7.0e-08 61.2 81 50.6
FAN17G0998 Fragaria x ananassa HOM05D003565 ORTHO05D003943 9.1e-08 60.8 144 34.7
DCAR_030517 Daucus carota HOM05D003565 ORTHO05D003943 1.5e-07 60.1 144 34.0
Zm00001eb016390 Zea mays HOM05D003565 ORTHO05D003943 2.6e-07 59.3 113 37.2
C03p48610 Brassica napus HOM05D003565 ORTHO05D003943 5.9e-07 58.2 118 36.4
DCAR_027061 Daucus carota HOM05D003565 ORTHO05D003943 5.9e-07 58.2 108 39.8
Eucgr.H03941 Eucalyptus grandis HOM05D003565 ORTHO05D003943 1.0e-06 57.4 111 38.7
Os03g0342100 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 1.0e-06 57.4 122 34.4
DCAR_030515 Daucus carota HOM05D003565 ORTHO05D003943 1.3e-06 57.0 94 38.3
ECA247G1649 Erigeron canadensis HOM05D023078 ORTHO05D003943 2.9e-06 55.8 114 39.5


User provided reference genes

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