Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p009778 Quercus lobata HOM05D003565 ORTHO05D003943 2.1e-71 272.3 147 100.0
QL93p0060_0003 Quercus lobata HOM05D003565 ORTHO05D003943 2.8e-71 271.9 147 99.3
QL06p009717 Quercus lobata HOM05D003565 ORTHO05D003943 3.7e-71 271.6 147 98.6
QL93p0060_0027 Quercus lobata HOM05D003565 ORTHO05D003943 9.0e-70 266.9 147 98.0
QL06p009739 Quercus lobata HOM05D003565 ORTHO05D003943 1.9e-67 259.2 147 95.9
QL06p009796 Quercus lobata HOM05D003565 ORTHO05D003943 7.1e-67 257.3 136 100.0
QL06p009754 Quercus lobata HOM05D003565 ORTHO05D003943 1.0e-65 253.4 147 93.9
QL06p009701 Quercus lobata HOM05D003565 ORTHO05D003943 1.3e-65 253.1 147 93.9
QL93p0060_0019 Quercus lobata HOM05D003565 ORTHO05D003943 1.3e-65 253.1 147 93.9
QL93p0060_0047 Quercus lobata HOM05D003565 ORTHO05D003943 6.7e-65 250.8 147 93.2
QL06p009790 Quercus lobata HOM05D003565 ORTHO05D003943 7.4e-64 247.3 147 91.8
QL06p009664 Quercus lobata HOM05D003565 ORTHO05D003943 5.9e-53 211.1 147 81.0
QL06p009725 Quercus lobata HOM05D003565 ORTHO05D003943 4.4e-48 194.9 110 90.9
QL06p009759 Quercus lobata HOM05D003565 ORTHO05D003943 1.4e-33 146.7 82 98.8
Dinv29764 Davidia involucrata HOM05D003565 ORTHO05D003943 9.8e-24 114.0 153 49.7
Thecc.04G287000 Theobroma cacao HOM05D003565 ORTHO05D003943 3.7e-23 112.1 160 48.8
Prupe.1G133700 Prunus persica HOM05D003565 ORTHO05D003943 7.0e-22 107.8 153 47.7
Rhsim02G0008000 Rhododendron simsii HOM05D003565 ORTHO05D003943 9.1e-22 107.5 146 47.9
vmacro15222 Vaccinium macrocarpon HOM05D003565 ORTHO05D003943 2.7e-21 105.9 154 48.1
Hma1.2p1_1807F.1_g303350 Hydrangea macrophylla HOM05D003565 ORTHO05D003943 3.5e-21 105.5 151 48.3
Cfa015405 Carpinus fangiana HOM05D003565 ORTHO05D003943 5.9e-21 104.8 156 46.8
Actinidia28386 Actinidia chinensis HOM05D003565 ORTHO05D003943 2.9e-20 102.4 159 44.0
SalBow2G2654 Salvia bowleyana HOM05D003565 ORTHO05D003943 8.6e-20 100.9 161 44.7
Peaxi162Scf00246g01219 Petunia axillaris HOM05D003565 ORTHO05D003943 1.1e-19 100.5 111 52.3
Gorai.011G191400 Gossypium raimondii HOM05D003565 ORTHO05D003943 2.5e-19 99.4 156 46.2
GSVIVG01035140001 Vitis vinifera HOM05D003565 ORTHO05D003943 2.5e-19 99.4 152 44.7
FAN12G1574 Fragaria x ananassa HOM05D003565 ORTHO05D003943 3.3e-19 99.0 158 43.7
FvH4_4g18480 Fragaria vesca HOM05D003565 ORTHO05D003943 4.2e-19 98.6 158 43.0
FAN12G0358 Fragaria x ananassa HOM05D003565 ORTHO05D003943 4.2e-19 98.6 158 43.7
MSTRG.10106 Avicennia marina HOM05D003565 ORTHO05D003943 5.5e-19 98.2 158 42.4
CiPaw.02G081300 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.6e-18 96.7 153 46.4
Duzib151G1023 Durio zibethinus HOM05D003565 ORTHO05D003943 1.6e-18 96.7 155 48.4
Gohir.A10G165200 Gossypium hirsutum HOM05D003565 ORTHO05D003943 2.8e-18 95.9 156 44.2
Gohir.D10G171300 Gossypium hirsutum HOM05D003565 ORTHO05D003943 2.8e-18 95.9 156 46.2
Cfa015408 Carpinus fangiana HOM05D003565 ORTHO05D003943 6.1e-18 94.7 155 46.5
Haze_01182 Corylus avellana HOM05D003565 ORTHO05D003943 6.1e-18 94.7 138 48.6
PGR004G2879 Punica granatum HOM05D003565 ORTHO05D003943 6.1e-18 94.7 108 52.8
CAN.G261.3 Capsicum annuum HOM05D003565 ORTHO05D003943 8.0e-18 94.4 157 44.6
Potri.010G012400 Populus trichocarpa HOM05D003565 ORTHO05D003943 1.0e-17 94.0 158 46.2
AL3G29580 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 1.4e-17 93.6 108 51.9
FAN17G2113 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.4e-17 93.6 157 40.8
SGA_v2.0_scaffold18G08345 Striga asiatica HOM05D003565 ORTHO05D003943 1.4e-17 93.6 164 40.9
AT3G16660 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 2.3e-17 92.8 108 51.9
Cpa.g.sc16.191 Carica papaya HOM05D003565 ORTHO05D003943 2.3e-17 92.8 154 40.9
CsaV3_3G014750 Cucumis sativus L. HOM05D003565 ORTHO05D003943 2.3e-17 92.8 110 48.2
MBI18_g24867_MAGBIO Magnolia biondii HOM05D003565 ORTHO05D003943 2.3e-17 92.8 150 42.7
CiPaw.02G081400 Carya illinoinensis HOM05D003565 ORTHO05D003943 3.0e-17 92.4 152 44.7
CiPaw.02G081500 Carya illinoinensis HOM05D003565 ORTHO05D003943 3.0e-17 92.4 152 44.7
Carub.0003s1639 Capsella rubella HOM05D003565 ORTHO05D003943 4.0e-17 92.0 108 51.9
THA.LOC104820292 Tarenaya hassleriana HOM05D003565 ORTHO05D003943 4.0e-17 92.0 145 45.5
Sabra10G0007900 Salix brachista HOM05D003565 ORTHO05D003943 5.2e-17 91.7 158 44.9
SalBow2G0621 Salvia bowleyana HOM05D003565 ORTHO05D003943 6.8e-17 91.3 105 50.5
Migut.O00777 Erythranthe guttata HOM05D003565 ORTHO05D003943 1.2e-16 90.5 156 42.9
CARHR091910 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.5e-16 90.1 101 54.5
COL.COLO4_13836 Corchorus olitorius HOM05D003565 ORTHO05D003943 1.5e-16 90.1 162 42.6
PGSC0003DMG400011334 Solanum tuberosum HOM05D003565 ORTHO05D003943 1.5e-16 90.1 147 43.5
PGR004G0277 Punica granatum HOM05D003565 ORTHO05D003943 2.0e-16 89.7 108 51.9
ClCG05G006170 Citrullus lanatus HOM05D003565 ORTHO05D003943 2.6e-16 89.4 156 40.4
Sopen01g028300 Solanum pennellii HOM05D003565 ORTHO05D003943 3.4e-16 89.0 142 44.4
TAR362G0267 Trochodendron aralioides HOM05D003565 ORTHO05D003943 3.4e-16 89.0 154 42.2
Actinidia14291 Actinidia chinensis HOM05D003565 ORTHO05D003943 9.8e-16 87.4 150 44.7
PGR004G2171 Punica granatum HOM05D003565 ORTHO05D003943 9.8e-16 87.4 107 51.4
RcHm_v2.0_Chr4g0422991 Rosa chinensis HOM05D003565 ORTHO05D003943 9.8e-16 87.4 157 41.4
MELO3C035189.2 Cucumis melo HOM05D003565 ORTHO05D003943 1.7e-15 86.7 97 51.5
Oeu064291.1 Olea europaea HOM05D003565 ORTHO05D003943 2.2e-15 86.3 168 40.5
CiPaw.02G081600 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.8e-15 85.9 119 46.2
Cc03_g01690 Coffea canephora HOM05D003565 ORTHO05D003943 2.8e-15 85.9 151 41.7
Solyc01g066680.3 Solanum lycopersicum HOM05D003565 ORTHO05D003943 2.8e-15 85.9 141 44.0
DCAR_027062 Daucus carota HOM05D003565 ORTHO05D003943 4.9e-15 85.1 100 50.0
DCAR_027064 Daucus carota HOM05D003565 ORTHO05D003943 4.9e-15 85.1 100 50.0
Cfa021269 Carpinus fangiana HOM05D003565 ORTHO05D003943 8.3e-15 84.3 156 38.5
CiPaw.02G059200 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.1e-14 84.0 149 43.6
HanXRQChr08g0214541 Helianthus annuus HOM05D003565 ORTHO05D003943 1.1e-14 84.0 147 44.2
ECA240G0767 Erigeron canadensis HOM05D003565 ORTHO05D003943 1.4e-14 83.6 150 41.3
Sed0026730 Sechium edule HOM05D003565 ORTHO05D003943 1.8e-14 83.2 110 44.5
Aa31LG8G3780 Aethionema arabicum HOM05D003565 ORTHO05D003943 3.1e-14 82.4 104 48.1
MD00G1127800 Malus domestica HOM05D003565 ORTHO05D003943 4.1e-14 82.0 158 41.1
Nitab4.5_0000194g0060 Nicotiana tabacum HOM05D003565 ORTHO05D003943 4.1e-14 82.0 148 43.2
CiPaw.02G058900 Carya illinoinensis HOM05D003565 ORTHO05D003943 7.0e-14 81.3 150 44.7
Sed0004032 Sechium edule HOM05D003565 ORTHO05D003943 7.0e-14 81.3 157 39.5
CSS0008161 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 9.2e-14 80.9 155 41.9
CANSAT78G1552 Cannabis sativa HOM05D003565 ORTHO05D003943 9.2e-14 80.9 102 50.0
HanXRQChr03g0088801 Helianthus annuus HOM05D003565 ORTHO05D003943 9.2e-14 80.9 145 38.6
HanXRQChr13g0420001 Helianthus annuus HOM05D003565 ORTHO05D003943 1.2e-13 80.5 150 40.7
CiPaw.02G059300 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.0e-13 79.7 131 46.6
Lalb_Chr15g0083411 Lupinus albus HOM05D003565 ORTHO05D003943 2.0e-13 79.7 154 39.6
Prupe.1G133600 Prunus persica HOM05D003565 ORTHO05D003943 2.0e-13 79.7 156 42.3
Psat1g155160 Pisum sativum HOM05D003565 ORTHO05D003943 2.7e-13 79.3 106 41.5
CARHR150160 Cardamine hirsuta HOM05D003565 ORTHO05D003943 7.8e-13 77.8 127 46.5
Thhalv10021522m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 7.8e-13 77.8 101 46.5
Medtr2g436350 Medicago truncatula HOM05D003565 ORTHO05D003943 7.8e-13 77.8 102 44.1
TWI09G1223 Tripterygium wilfordii HOM05D003565 ORTHO05D003943 7.8e-13 77.8 152 40.8
BcaC09g48620 Brassica carinata HOM05D003565 ORTHO05D003943 1.0e-12 77.4 106 45.3
HanXRQChr03g0089401 Helianthus annuus HOM05D003565 ORTHO05D003943 1.0e-12 77.4 153 37.9
CARHR091930 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.3e-12 77.0 125 44.0
MELO3C006673.2 Cucumis melo HOM05D003565 ORTHO05D003943 1.7e-12 76.6 162 40.1
CsaV3_6G023960 Cucumis sativus L. HOM05D000549 ORTHO05D001527 1.7e-12 76.6 93 49.5
QL06p009817 Quercus lobata HOM05D003565 ORTHO05D003943 1.7e-12 76.6 154 42.2
TPR.G31280 Trifolium pratense HOM05D003565 ORTHO05D003943 1.7e-12 76.6 110 42.7
Lsat_1_v5_gn_6_95321 Lactuca sativa HOM05D003565 ORTHO05D003943 3.8e-12 75.5 152 37.5
HPP92_006917 Vanilla planifolia HOM05D003565 ORTHO05D003943 3.8e-12 75.5 105 44.8
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 5.0e-12 75.1 94 47.9
Nitab4.5_0000513g0180 Nicotiana tabacum HOM05D003565 ORTHO05D003943 6.6e-12 74.7 158 36.1
Nitab4.5_0005362g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 6.6e-12 74.7 152 38.2
HanXRQChr08g0214531 Helianthus annuus HOM05D003565 ORTHO05D003943 8.6e-12 74.3 151 39.7
RcHm_v2.0_Chr4g0422901 Rosa chinensis HOM05D003565 ORTHO05D003943 1.1e-11 73.9 161 37.9
Glyma.09G043500 Glycine max HOM05D003565 ORTHO05D003943 1.9e-11 73.2 109 41.3
HanXRQChr03g0088811 Helianthus annuus HOM05D003565 ORTHO05D003943 1.9e-11 73.2 127 40.2
Lj6g0014140 Lotus japonicus HOM05D003565 ORTHO05D003943 1.9e-11 73.2 156 36.5
Nitab4.5_0000493g0090 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.9e-11 73.2 93 47.3
CARHR150150 Cardamine hirsuta HOM05D003565 ORTHO05D003943 2.5e-11 72.8 133 40.6
PSO210G5566 Papaver somniferum HOM05D003565 ORTHO05D003943 2.5e-11 72.8 155 43.2
CARHR091920 Cardamine hirsuta HOM05D003565 ORTHO05D003943 7.3e-11 71.2 133 41.4
CsaV3_6G024110 Cucumis sativus L. HOM05D000549 ORTHO05D003943 7.3e-11 71.2 93 47.3
Phvul.009G249400 Phaseolus vulgaris HOM05D003565 ORTHO05D003943 7.3e-11 71.2 152 38.2
PSO832G2395 Papaver somniferum HOM05D003565 ORTHO05D003943 1.2e-10 70.5 154 40.9
Zm00001eb111390 Zea mays HOM05D003565 ORTHO05D003943 1.2e-10 70.5 111 42.3
AT3G16670 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 2.1e-10 69.7 145 37.9
BcaB04g20866 Brassica carinata HOM05D003565 ORTHO05D003943 2.1e-10 69.7 101 43.6
FAN12G0988 Fragaria x ananassa HOM05D003565 ORTHO05D003943 2.1e-10 69.7 166 36.7
VMungo1309G1767 Vigna mungo HOM05D003565 ORTHO05D003943 2.8e-10 69.3 104 41.3
FvH4_4g18430 Fragaria vesca HOM05D003565 ORTHO05D003943 3.6e-10 68.9 147 38.8
Nitab4.5_0003949g0040 Nicotiana tabacum HOM05D003565 ORTHO05D003943 3.6e-10 68.9 148 37.8
Nitab4.5_0000194g0050 Nicotiana tabacum HOM05D003565 ORTHO05D003943 4.7e-10 68.6 125 40.0
Ciclev10006885m.g Citrus clementina HOM05D003565 ORTHO05D003943 6.1e-10 68.2 152 36.2
A01p37210 Brassica napus HOM05D003565 ORTHO05D003943 8.0e-10 67.8 83 48.2
Ciclev10006409m.g Citrus clementina HOM05D003565 ORTHO05D003943 8.0e-10 67.8 154 37.7
Nitab4.5_0003949g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 8.0e-10 67.8 148 37.8
Oeu026321.1 Olea europaea HOM05D003565 ORTHO05D003943 1.8e-09 66.6 145 35.9
Carub.0002s1293 Capsella rubella HOM05D003565 ORTHO05D003943 2.3e-09 66.2 145 37.2
Oeu027152.1 Olea europaea HOM05D003565 ORTHO05D003943 2.3e-09 66.2 149 38.9
arahy.Tifrunner.gnm1.ann1.VE1P60 Arachis hypogaea HOM05D003565 ORTHO05D003943 3.1e-09 65.9 98 45.9
A01p37230 Brassica napus HOM05D003565 ORTHO05D003943 3.1e-09 65.9 83 47.0
HanXRQChr03g0089351 Helianthus annuus HOM05D003565 ORTHO05D003943 3.1e-09 65.9 145 40.0
Os07g0674500 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 3.1e-09 65.9 154 37.0
AL3G29590 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 4.0e-09 65.5 145 35.9
Nitab4.5_0000493g0100 Nicotiana tabacum HOM05D003565 ORTHO05D003943 4.0e-09 65.5 148 36.5
FAN12G2280 Fragaria x ananassa HOM05D003565 ORTHO05D003943 5.2e-09 65.1 165 35.8
Carub.0003s1640 Capsella rubella HOM05D003565 ORTHO05D003943 6.8e-09 64.7 147 34.7
HanXRQChr05g0130321 Helianthus annuus HOM05D003565 ORTHO05D003943 1.2e-08 63.9 151 32.5
BcaB04g18928 Brassica carinata HOM05D003565 ORTHO05D003943 1.5e-08 63.5 134 35.8
arahy.Tifrunner.gnm1.ann1.Q570SP Arachis hypogaea HOM05D003565 ORTHO05D003943 2.0e-08 63.2 149 37.6
DCAR_002472 Daucus carota HOM05D003565 ORTHO05D003943 2.0e-08 63.2 142 37.3
PGR004G2038 Punica granatum HOM05D003565 ORTHO05D003943 2.0e-08 63.2 155 36.8
Oeu027151.1 Olea europaea HOM05D003565 ORTHO05D003943 2.6e-08 62.8 135 39.3
DCAR_022430 Daucus carota HOM05D003565 ORTHO05D003943 3.4e-08 62.4 160 35.6
Os07g0674400 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 3.4e-08 62.4 141 36.9
Thhalv10021613m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 5.8e-08 61.6 106 41.5
HanXRQChr01g0002181 Helianthus annuus HOM05D003565 ORTHO05D003943 5.8e-08 61.6 148 33.1
FAN17G0998 Fragaria x ananassa HOM05D003565 ORTHO05D003943 7.5e-08 61.2 157 35.0
QL06p009834 Quercus lobata HOM05D003565 ORTHO05D003943 9.8e-08 60.8 152 34.2
DCAR_030517 Daucus carota HOM05D003565 ORTHO05D003943 1.3e-07 60.5 157 34.4
ECA247G1649 Erigeron canadensis HOM05D023078 ORTHO05D003943 1.3e-07 60.5 125 39.2
Zm00001eb016410 Zea mays HOM05D003565 ORTHO05D003943 1.7e-07 60.1 133 38.3
HanXRQChr03g0089391 Helianthus annuus HOM05D003565 ORTHO05D003943 2.2e-07 59.7 111 42.3
Os03g0341600 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 2.9e-07 59.3 126 36.5
A03p40060 Brassica napus HOM05D003565 ORTHO05D003943 3.7e-07 58.9 144 36.8
BraA03t13156Z Brassica rapa HOM05D003565 ORTHO05D003943 3.7e-07 58.9 144 36.8
DCAR_027061 Daucus carota HOM05D003565 ORTHO05D003943 6.4e-07 58.2 108 39.8
Os03g0342100 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 3.2e-06 55.8 127 33.9
Zm00001eb016390 Zea mays HOM05D003565 ORTHO05D003943 7.0e-06 54.7 138 34.8
C03p48610 Brassica napus HOM05D003565 ORTHO05D003943 9.2e-06 54.3 143 35.0


User provided reference genes

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