Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p009725 Quercus lobata HOM05D003565 ORTHO05D003943 2.0e-74 282.3 145 100.0
QL06p009754 Quercus lobata HOM05D003565 ORTHO05D003943 5.4e-51 204.5 110 95.5
QL06p009701 Quercus lobata HOM05D003565 ORTHO05D003943 7.1e-51 204.1 110 95.5
QL93p0060_0019 Quercus lobata HOM05D003565 ORTHO05D003943 7.1e-51 204.1 110 95.5
QL93p0060_0047 Quercus lobata HOM05D003565 ORTHO05D003943 3.5e-50 201.8 110 94.5
QL06p009790 Quercus lobata HOM05D003565 ORTHO05D003943 1.3e-49 199.9 110 93.6
QL06p009717 Quercus lobata HOM05D003565 ORTHO05D003943 1.5e-48 196.4 110 91.8
QL93p0060_0003 Quercus lobata HOM05D003565 ORTHO05D003943 1.5e-48 196.4 110 91.8
QL06p009778 Quercus lobata HOM05D003565 ORTHO05D003943 1.9e-48 196.1 110 90.9
QL06p009796 Quercus lobata HOM05D003565 ORTHO05D003943 1.9e-48 196.1 110 90.9
QL93p0060_0027 Quercus lobata HOM05D003565 ORTHO05D003943 4.3e-48 194.9 110 91.8
QL06p009739 Quercus lobata HOM05D003565 ORTHO05D003943 9.0e-46 187.2 110 89.1
QL06p009664 Quercus lobata HOM05D003565 ORTHO05D003943 4.5e-37 158.3 110 76.4
Thecc.04G287000 Theobroma cacao HOM05D003565 ORTHO05D003943 4.8e-23 111.7 109 56.9
Actinidia28386 Actinidia chinensis HOM05D003565 ORTHO05D003943 5.3e-22 108.2 108 53.7
Dinv29764 Davidia involucrata HOM05D003565 ORTHO05D003943 4.5e-21 105.1 105 56.2
SalBow2G2654 Salvia bowleyana HOM05D003565 ORTHO05D003943 5.8e-21 104.8 135 49.6
Rhsim02G0008000 Rhododendron simsii HOM05D003565 ORTHO05D003943 2.9e-20 102.4 119 50.4
Prupe.1G133700 Prunus persica HOM05D003565 ORTHO05D003943 4.9e-20 101.7 129 48.1
CAN.G261.3 Capsicum annuum HOM05D003565 ORTHO05D003943 6.5e-20 101.3 99 60.6
Hma1.2p1_1807F.1_g303350 Hydrangea macrophylla HOM05D003565 ORTHO05D003943 6.5e-20 101.3 103 56.3
Cpa.g.sc16.191 Carica papaya HOM05D003565 ORTHO05D003943 3.2e-19 99.0 109 52.3
Potri.010G012400 Populus trichocarpa HOM05D003565 ORTHO05D003943 3.2e-19 99.0 109 56.0
CiPaw.02G081300 Carya illinoinensis HOM05D003565 ORTHO05D003943 4.2e-19 98.6 103 53.4
COL.COLO4_13836 Corchorus olitorius HOM05D003565 ORTHO05D003943 4.2e-19 98.6 103 57.3
Duzib151G1023 Durio zibethinus HOM05D003565 ORTHO05D003943 5.5e-19 98.2 104 54.8
FvH4_4g18480 Fragaria vesca HOM05D003565 ORTHO05D003943 5.5e-19 98.2 110 51.8
FAN12G1574 Fragaria x ananassa HOM05D003565 ORTHO05D003943 5.5e-19 98.2 110 51.8
Peaxi162Scf00246g01219 Petunia axillaris HOM05D003565 ORTHO05D003943 5.5e-19 98.2 101 53.5
SGA_v2.0_scaffold18G08345 Striga asiatica HOM05D003565 ORTHO05D003943 5.5e-19 98.2 108 50.0
vmacro15222 Vaccinium macrocarpon HOM05D003565 ORTHO05D003943 5.5e-19 98.2 122 49.2
FAN12G0358 Fragaria x ananassa HOM05D003565 ORTHO05D003943 7.1e-19 97.8 110 51.8
Gohir.A10G165200 Gossypium hirsutum HOM05D003565 ORTHO05D003943 7.1e-19 97.8 105 52.4
Gorai.011G191400 Gossypium raimondii HOM05D003565 ORTHO05D003943 7.1e-19 97.8 105 51.4
Sabra10G0007900 Salix brachista HOM05D003565 ORTHO05D003943 1.6e-18 96.7 109 56.0
Oeu064291.1 Olea europaea HOM05D003565 ORTHO05D003943 2.7e-18 95.9 114 49.1
MSTRG.10106 Avicennia marina HOM05D003565 ORTHO05D003943 3.5e-18 95.5 126 46.8
Gohir.D10G171300 Gossypium hirsutum HOM05D003565 ORTHO05D003943 6.0e-18 94.7 105 51.4
CsaV3_3G014750 Cucumis sativus L. HOM05D003565 ORTHO05D003943 1.0e-17 94.0 109 48.6
GSVIVG01035140001 Vitis vinifera HOM05D003565 ORTHO05D003943 1.0e-17 94.0 103 52.4
FAN17G2113 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.3e-17 93.6 110 49.1
Cfa015405 Carpinus fangiana HOM05D003565 ORTHO05D003943 2.3e-17 92.8 100 54.0
PGR004G2879 Punica granatum HOM05D003565 ORTHO05D003943 2.3e-17 92.8 129 48.1
Migut.O00777 Erythranthe guttata HOM05D003565 ORTHO05D003943 3.9e-17 92.0 137 43.8
MBI18_g24867_MAGBIO Magnolia biondii HOM05D003565 ORTHO05D003943 3.9e-17 92.0 101 53.5
SalBow2G0621 Salvia bowleyana HOM05D003565 ORTHO05D003943 3.9e-17 92.0 123 47.2
PGSC0003DMG400011334 Solanum tuberosum HOM05D003565 ORTHO05D003943 3.9e-17 92.0 94 55.3
MELO3C035189.2 Cucumis melo HOM05D003565 ORTHO05D003943 5.1e-17 91.7 97 54.6
Sopen01g028300 Solanum pennellii HOM05D003565 ORTHO05D003943 6.7e-17 91.3 89 56.2
ClCG05G006170 Citrullus lanatus HOM05D003565 ORTHO05D003943 8.7e-17 90.9 108 48.1
Solyc01g066680.3 Solanum lycopersicum HOM05D003565 ORTHO05D003943 3.3e-16 89.0 88 55.7
THA.LOC104820292 Tarenaya hassleriana HOM05D003565 ORTHO05D003943 3.3e-16 89.0 109 48.6
CiPaw.02G081400 Carya illinoinensis HOM05D003565 ORTHO05D003943 4.3e-16 88.6 102 50.0
CiPaw.02G081500 Carya illinoinensis HOM05D003565 ORTHO05D003943 4.3e-16 88.6 102 50.0
DCAR_027062 Daucus carota HOM05D003565 ORTHO05D003943 4.3e-16 88.6 106 50.0
DCAR_027064 Daucus carota HOM05D003565 ORTHO05D003943 4.3e-16 88.6 106 50.0
RcHm_v2.0_Chr4g0422991 Rosa chinensis HOM05D003565 ORTHO05D003943 4.3e-16 88.6 101 48.5
Actinidia14291 Actinidia chinensis HOM05D003565 ORTHO05D003943 1.3e-15 87.0 106 50.0
Psat1g155160 Pisum sativum HOM05D003565 ORTHO05D003943 2.2e-15 86.3 109 44.0
PGR004G0277 Punica granatum HOM05D003565 ORTHO05D003943 2.2e-15 86.3 102 51.0
AL3G29580 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 2.8e-15 85.9 101 50.5
AT3G16660 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 2.8e-15 85.9 99 51.5
CARHR091910 Cardamine hirsuta HOM05D003565 ORTHO05D003943 3.7e-15 85.5 101 52.5
MELO3C006673.2 Cucumis melo HOM05D003565 ORTHO05D003943 3.7e-15 85.5 105 48.6
Carub.0003s1639 Capsella rubella HOM05D003565 ORTHO05D003943 4.8e-15 85.1 101 52.5
Haze_01182 Corylus avellana HOM05D003565 ORTHO05D003943 6.3e-15 84.7 108 49.1
PGR004G2171 Punica granatum HOM05D003565 ORTHO05D003943 8.2e-15 84.3 101 50.5
Cc03_g01690 Coffea canephora HOM05D003565 ORTHO05D003943 1.1e-14 84.0 92 51.1
Aa31LG8G3780 Aethionema arabicum HOM05D003565 ORTHO05D003943 1.4e-14 83.6 104 50.0
Cfa021269 Carpinus fangiana HOM05D003565 ORTHO05D003943 1.4e-14 83.6 111 44.1
CANSAT78G1552 Cannabis sativa HOM05D003565 ORTHO05D003943 2.4e-14 82.8 122 45.9
Cfa015408 Carpinus fangiana HOM05D003565 ORTHO05D003943 2.4e-14 82.8 110 50.0
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 3.1e-14 82.4 94 52.1
TAR362G0267 Trochodendron aralioides HOM05D003565 ORTHO05D003943 3.1e-14 82.4 105 45.7
Sed0004032 Sechium edule HOM05D003565 ORTHO05D003943 4.1e-14 82.0 105 44.8
Medtr2g436350 Medicago truncatula HOM05D003565 ORTHO05D003943 5.3e-14 81.6 102 45.1
TPR.G31280 Trifolium pratense HOM05D003565 ORTHO05D003943 5.3e-14 81.6 99 45.5
HanXRQChr13g0420001 Helianthus annuus HOM05D003565 ORTHO05D003943 9.0e-14 80.9 99 46.5
Nitab4.5_0000194g0060 Nicotiana tabacum HOM05D003565 ORTHO05D003943 9.0e-14 80.9 95 51.6
Sed0026730 Sechium edule HOM05D003565 ORTHO05D003943 9.0e-14 80.9 97 45.4
CiPaw.02G059200 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.5e-13 80.1 108 44.4
HanXRQChr08g0214541 Helianthus annuus HOM05D003565 ORTHO05D003943 1.5e-13 80.1 101 52.5
CsaV3_6G023960 Cucumis sativus L. HOM05D000549 ORTHO05D001527 2.0e-13 79.7 93 51.6
CiPaw.02G081600 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.6e-13 79.3 112 43.8
ECA240G0767 Erigeron canadensis HOM05D003565 ORTHO05D003943 2.6e-13 79.3 123 41.5
CiPaw.02G058900 Carya illinoinensis HOM05D003565 ORTHO05D003943 3.4e-13 79.0 100 49.0
QL06p009759 Quercus lobata HOM05D003565 ORTHO05D003943 3.4e-13 79.0 45 88.9
Thhalv10021522m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 4.5e-13 78.6 97 47.4
Lalb_Chr15g0083411 Lupinus albus HOM05D003565 ORTHO05D003943 4.5e-13 78.6 109 45.9
CSS0008161 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 5.9e-13 78.2 105 44.8
Lsat_1_v5_gn_6_95321 Lactuca sativa HOM05D003565 ORTHO05D003943 5.9e-13 78.2 99 48.5
MD00G1127800 Malus domestica HOM05D003565 ORTHO05D003943 7.7e-13 77.8 100 49.0
PSO210G5566 Papaver somniferum HOM05D003565 ORTHO05D003943 1.3e-12 77.0 103 47.6
HanXRQChr03g0088801 Helianthus annuus HOM05D003565 ORTHO05D003943 2.2e-12 76.3 119 38.7
AT3G16670 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 2.9e-12 75.9 101 47.5
RcHm_v2.0_Chr4g0422901 Rosa chinensis HOM05D003565 ORTHO05D003943 5.0e-12 75.1 114 43.0
TWI09G1223 Tripterygium wilfordii HOM05D003565 ORTHO05D003943 6.5e-12 74.7 103 44.7
CiPaw.02G059300 Carya illinoinensis HOM05D003565 ORTHO05D003943 8.5e-12 74.3 90 48.9
CsaV3_6G024110 Cucumis sativus L. HOM05D000549 ORTHO05D003943 8.5e-12 74.3 93 49.5
Prupe.1G133600 Prunus persica HOM05D003565 ORTHO05D003943 1.1e-11 73.9 99 47.5
AL3G29590 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 1.4e-11 73.6 101 45.5
BcaC09g48620 Brassica carinata HOM05D003565 ORTHO05D003943 1.4e-11 73.6 118 40.7
PSO832G2395 Papaver somniferum HOM05D003565 ORTHO05D003943 1.4e-11 73.6 103 45.6
Nitab4.5_0000513g0180 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.9e-11 73.2 104 42.3
Nitab4.5_0003949g0040 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.9e-11 73.2 84 51.2
HanXRQChr03g0089401 Helianthus annuus HOM05D003565 ORTHO05D003943 2.5e-11 72.8 112 42.9
Carub.0002s1293 Capsella rubella HOM05D003565 ORTHO05D003943 3.2e-11 72.4 112 44.6
Lj6g0014140 Lotus japonicus HOM05D003565 ORTHO05D003943 3.2e-11 72.4 114 42.1
Nitab4.5_0005362g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 3.2e-11 72.4 101 43.6
Carub.0003s1640 Capsella rubella HOM05D003565 ORTHO05D003943 4.2e-11 72.0 112 42.9
FAN12G0988 Fragaria x ananassa HOM05D003565 ORTHO05D003943 4.2e-11 72.0 103 43.7
Nitab4.5_0003949g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 4.2e-11 72.0 84 51.2
Nitab4.5_0000194g0050 Nicotiana tabacum HOM05D003565 ORTHO05D003943 7.2e-11 71.2 82 50.0
Nitab4.5_0000493g0090 Nicotiana tabacum HOM05D003565 ORTHO05D003943 9.4e-11 70.9 95 45.3
Oeu026321.1 Olea europaea HOM05D003565 ORTHO05D003943 9.4e-11 70.9 99 43.4
PGR004G2038 Punica granatum HOM05D003565 ORTHO05D003943 9.4e-11 70.9 107 40.2
HanXRQChr03g0088811 Helianthus annuus HOM05D003565 ORTHO05D003943 1.2e-10 70.5 87 46.0
Nitab4.5_0000493g0100 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.6e-10 70.1 90 46.7
Oeu027151.1 Olea europaea HOM05D003565 ORTHO05D003943 1.6e-10 70.1 116 43.1
Glyma.09G043500 Glycine max HOM05D003565 ORTHO05D003943 2.1e-10 69.7 112 39.3
FvH4_4g18430 Fragaria vesca HOM05D003565 ORTHO05D003943 2.7e-10 69.3 84 48.8
HPP92_006917 Vanilla planifolia HOM05D003565 ORTHO05D003943 2.7e-10 69.3 102 43.1
FAN12G2280 Fragaria x ananassa HOM05D003565 ORTHO05D003943 3.6e-10 68.9 102 43.1
HanXRQChr08g0214531 Helianthus annuus HOM05D003565 ORTHO05D003943 3.6e-10 68.9 110 43.6
CARHR091930 Cardamine hirsuta HOM05D003565 ORTHO05D003943 4.6e-10 68.6 89 48.3
CARHR150160 Cardamine hirsuta HOM05D003565 ORTHO05D003943 4.6e-10 68.6 107 44.9
arahy.Tifrunner.gnm1.ann1.Q570SP Arachis hypogaea HOM05D003565 ORTHO05D003943 7.9e-10 67.8 125 41.6
BcaB04g20866 Brassica carinata HOM05D003565 ORTHO05D003943 1.0e-09 67.4 101 43.6
A01p37210 Brassica napus HOM05D003565 ORTHO05D003943 1.8e-09 66.6 83 48.2
Ciclev10006885m.g Citrus clementina HOM05D003565 ORTHO05D003943 1.8e-09 66.6 122 39.3
Phvul.009G249400 Phaseolus vulgaris HOM05D003565 ORTHO05D003943 1.8e-09 66.6 113 38.9
CARHR091920 Cardamine hirsuta HOM05D003565 ORTHO05D003943 2.3e-09 66.2 111 43.2
HanXRQChr03g0089391 Helianthus annuus HOM05D003565 ORTHO05D003943 2.3e-09 66.2 68 58.8
BcaB04g18928 Brassica carinata HOM05D003565 ORTHO05D003943 3.0e-09 65.9 90 42.2
QL06p009817 Quercus lobata HOM05D003565 ORTHO05D003943 3.0e-09 65.9 108 42.6
arahy.Tifrunner.gnm1.ann1.VE1P60 Arachis hypogaea HOM05D003565 ORTHO05D003943 3.9e-09 65.5 99 46.5
HanXRQChr01g0002181 Helianthus annuus HOM05D003565 ORTHO05D003943 3.9e-09 65.5 107 40.2
Oeu027152.1 Olea europaea HOM05D003565 ORTHO05D003943 3.9e-09 65.5 107 43.0
CARHR150150 Cardamine hirsuta HOM05D003565 ORTHO05D003943 5.1e-09 65.1 90 45.6
Ciclev10006409m.g Citrus clementina HOM05D003565 ORTHO05D003943 5.1e-09 65.1 105 42.9
VMungo1309G1767 Vigna mungo HOM05D003565 ORTHO05D003943 5.1e-09 65.1 104 40.4
A01p37230 Brassica napus HOM05D003565 ORTHO05D003943 6.7e-09 64.7 83 47.0
DCAR_022430 Daucus carota HOM05D003565 ORTHO05D003943 8.8e-09 64.3 106 39.6
DCAR_030517 Daucus carota HOM05D003565 ORTHO05D003943 1.1e-08 63.9 117 41.9
Zm00001eb111390 Zea mays HOM05D003565 ORTHO05D003943 1.1e-08 63.9 102 41.2
A03p40060 Brassica napus HOM05D003565 ORTHO05D003943 1.5e-08 63.5 100 41.0
BraA03t13156Z Brassica rapa HOM05D003565 ORTHO05D003943 1.5e-08 63.5 100 41.0
HanXRQChr05g0130321 Helianthus annuus HOM05D003565 ORTHO05D003943 3.3e-08 62.4 107 39.3
HanXRQChr03g0089351 Helianthus annuus HOM05D003565 ORTHO05D003943 7.4e-08 61.2 89 42.7
Os07g0674500 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 7.4e-08 61.2 104 42.3
FAN17G0998 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.3e-07 60.5 108 38.0
C03p48610 Brassica napus HOM05D003565 ORTHO05D003943 2.2e-07 59.7 100 39.0
DCAR_002472 Daucus carota HOM05D003565 ORTHO05D003943 2.8e-07 59.3 101 38.6
Os07g0674400 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 4.8e-07 58.5 103 38.8
DCAR_027061 Daucus carota HOM05D003565 ORTHO05D003943 1.1e-06 57.4 108 39.8
Os03g0341600 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 1.8e-06 56.6 83 39.8
DCAR_030515 Daucus carota HOM05D003565 ORTHO05D003943 3.1e-06 55.8 87 42.5
Nitab4.5_0000930g0010 Nicotiana tabacum HOM05D003565 ORTHO05D003943 3.1e-06 55.8 83 45.8
Zm00001eb016410 Zea mays HOM05D003565 ORTHO05D003943 3.1e-06 55.8 109 35.8
Os03g0342100 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 5.3e-06 55.1 110 32.7
QL06p009834 Quercus lobata HOM05D003565 ORTHO05D003943 5.3e-06 55.1 103 35.0
BcaC01g03788 Brassica carinata HOM05D003565 ORTHO05D003943 6.9e-06 54.7 100 37.0
ECA247G1649 Erigeron canadensis HOM05D023078 ORTHO05D003943 9.1e-06 54.3 73 45.2
Zm00001eb016390 Zea mays HOM05D003565 ORTHO05D003943 9.1e-06 54.3 78 41.0


User provided reference genes

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