Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p009701 Quercus lobata HOM05D003565 ORTHO05D003943 8.2e-71 270.4 147 100.0
QL93p0060_0019 Quercus lobata HOM05D003565 ORTHO05D003943 8.2e-71 270.4 147 100.0
QL93p0060_0047 Quercus lobata HOM05D003565 ORTHO05D003943 4.0e-70 268.1 147 99.3
QL06p009754 Quercus lobata HOM05D003565 ORTHO05D003943 2.0e-69 265.8 147 98.6
QL06p009790 Quercus lobata HOM05D003565 ORTHO05D003943 1.4e-67 259.6 147 96.6
QL93p0060_0003 Quercus lobata HOM05D003565 ORTHO05D003943 2.3e-65 252.3 147 94.6
QL06p009717 Quercus lobata HOM05D003565 ORTHO05D003943 3.0e-65 251.9 147 93.9
QL06p009778 Quercus lobata HOM05D003565 ORTHO05D003943 3.0e-65 251.9 147 93.9
QL93p0060_0027 Quercus lobata HOM05D003565 ORTHO05D003943 6.7e-65 250.8 147 94.6
QL06p009739 Quercus lobata HOM05D003565 ORTHO05D003943 1.4e-62 243.0 147 92.5
QL06p009796 Quercus lobata HOM05D003565 ORTHO05D003943 7.6e-61 237.3 136 93.4
QL06p009664 Quercus lobata HOM05D003565 ORTHO05D003943 2.2e-52 209.1 147 81.6
QL06p009725 Quercus lobata HOM05D003565 ORTHO05D003943 1.6e-50 203.0 110 95.5
QL06p009759 Quercus lobata HOM05D003565 ORTHO05D003943 1.7e-31 139.8 82 95.1
Thecc.04G287000 Theobroma cacao HOM05D003565 ORTHO05D003943 9.1e-22 107.5 160 46.9
Dinv29764 Davidia involucrata HOM05D003565 ORTHO05D003943 2.0e-21 106.3 153 47.7
Prupe.1G133700 Prunus persica HOM05D003565 ORTHO05D003943 6.6e-20 101.3 153 47.1
Rhsim02G0008000 Rhododendron simsii HOM05D003565 ORTHO05D003943 2.5e-19 99.4 146 45.2
Hma1.2p1_1807F.1_g303350 Hydrangea macrophylla HOM05D003565 ORTHO05D003943 3.3e-19 99.0 151 45.7
vmacro15222 Vaccinium macrocarpon HOM05D003565 ORTHO05D003943 3.3e-19 99.0 154 46.1
Cfa015405 Carpinus fangiana HOM05D003565 ORTHO05D003943 7.2e-19 97.8 156 44.9
Actinidia28386 Actinidia chinensis HOM05D003565 ORTHO05D003943 1.6e-18 96.7 159 43.4
Peaxi162Scf00246g01219 Petunia axillaris HOM05D003565 ORTHO05D003943 2.1e-18 96.3 111 50.5
SalBow2G2654 Salvia bowleyana HOM05D003565 ORTHO05D003943 3.6e-18 95.5 161 42.9
Gorai.011G191400 Gossypium raimondii HOM05D003565 ORTHO05D003943 6.1e-18 94.7 156 44.2
CiPaw.02G081300 Carya illinoinensis HOM05D003565 ORTHO05D003943 3.0e-17 92.4 153 45.8
Duzib151G1023 Durio zibethinus HOM05D003565 ORTHO05D003943 5.2e-17 91.7 155 46.5
FAN12G1574 Fragaria x ananassa HOM05D003565 ORTHO05D003943 5.2e-17 91.7 158 41.8
Gohir.D10G171300 Gossypium hirsutum HOM05D003565 ORTHO05D003943 5.2e-17 91.7 156 44.2
Cfa015408 Carpinus fangiana HOM05D003565 ORTHO05D003943 6.8e-17 91.3 156 45.5
CiPaw.02G081400 Carya illinoinensis HOM05D003565 ORTHO05D003943 6.8e-17 91.3 152 44.7
CiPaw.02G081500 Carya illinoinensis HOM05D003565 ORTHO05D003943 6.8e-17 91.3 152 44.7
FvH4_4g18480 Fragaria vesca HOM05D003565 ORTHO05D003943 6.8e-17 91.3 158 41.1
FAN12G0358 Fragaria x ananassa HOM05D003565 ORTHO05D003943 6.8e-17 91.3 158 41.8
Gohir.A10G165200 Gossypium hirsutum HOM05D003565 ORTHO05D003943 6.8e-17 91.3 156 42.3
PGR004G2879 Punica granatum HOM05D003565 ORTHO05D003943 6.8e-17 91.3 108 52.8
COL.COLO4_13836 Corchorus olitorius HOM05D003565 ORTHO05D003943 1.2e-16 90.5 162 43.8
GSVIVG01035140001 Vitis vinifera HOM05D003565 ORTHO05D003943 1.2e-16 90.5 152 42.8
CAN.G261.3 Capsicum annuum HOM05D003565 ORTHO05D003943 1.5e-16 90.1 157 43.3
Haze_01182 Corylus avellana HOM05D003565 ORTHO05D003943 1.5e-16 90.1 138 47.1
Potri.010G012400 Populus trichocarpa HOM05D003565 ORTHO05D003943 2.6e-16 89.4 158 44.9
SGA_v2.0_scaffold18G08345 Striga asiatica HOM05D003565 ORTHO05D003943 2.6e-16 89.4 164 39.0
ClCG05G006170 Citrullus lanatus HOM05D003565 ORTHO05D003943 3.4e-16 89.0 156 41.7
MSTRG.10106 Avicennia marina HOM05D003565 ORTHO05D003943 4.4e-16 88.6 158 41.1
MBI18_g24867_MAGBIO Magnolia biondii HOM05D003565 ORTHO05D003943 5.7e-16 88.2 150 42.0
Sabra10G0007900 Salix brachista HOM05D003565 ORTHO05D003943 5.7e-16 88.2 158 44.3
CsaV3_3G014750 Cucumis sativus L. HOM05D003565 ORTHO05D003943 7.5e-16 87.8 110 46.4
MELO3C035189.2 Cucumis melo HOM05D003565 ORTHO05D003943 1.7e-15 86.7 97 52.6
FAN17G2113 Fragaria x ananassa HOM05D003565 ORTHO05D003943 2.2e-15 86.3 157 39.5
Sopen01g028300 Solanum pennellii HOM05D003565 ORTHO05D003943 2.8e-15 85.9 142 45.1
PGSC0003DMG400011334 Solanum tuberosum HOM05D003565 ORTHO05D003943 3.7e-15 85.5 147 42.2
Oeu064291.1 Olea europaea HOM05D003565 ORTHO05D003943 4.9e-15 85.1 169 39.1
PGR004G0277 Punica granatum HOM05D003565 ORTHO05D003943 4.9e-15 85.1 108 50.9
SalBow2G0621 Salvia bowleyana HOM05D003565 ORTHO05D003943 4.9e-15 85.1 105 49.5
Cpa.g.sc16.191 Carica papaya HOM05D003565 ORTHO05D003943 6.3e-15 84.7 154 38.3
Migut.O00777 Erythranthe guttata HOM05D003565 ORTHO05D003943 6.3e-15 84.7 156 41.0
TAR362G0267 Trochodendron aralioides HOM05D003565 ORTHO05D003943 6.3e-15 84.7 154 40.3
THA.LOC104820292 Tarenaya hassleriana HOM05D003565 ORTHO05D003943 1.1e-14 84.0 145 44.1
Cfa021269 Carpinus fangiana HOM05D003565 ORTHO05D003943 1.4e-14 83.6 155 38.7
PGR004G2171 Punica granatum HOM05D003565 ORTHO05D003943 1.8e-14 83.2 107 50.5
Solyc01g066680.3 Solanum lycopersicum HOM05D003565 ORTHO05D003943 1.8e-14 83.2 141 44.7
Nitab4.5_0000194g0060 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.4e-14 82.8 148 43.2
AL3G29580 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 3.1e-14 82.4 108 49.1
CiPaw.02G081600 Carya illinoinensis HOM05D003565 ORTHO05D003943 3.1e-14 82.4 119 44.5
Actinidia14291 Actinidia chinensis HOM05D003565 ORTHO05D003943 4.1e-14 82.0 150 43.3
DCAR_027062 Daucus carota HOM05D003565 ORTHO05D003943 4.1e-14 82.0 100 49.0
DCAR_027064 Daucus carota HOM05D003565 ORTHO05D003943 4.1e-14 82.0 100 49.0
AT3G16660 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 5.4e-14 81.6 108 49.1
Carub.0003s1639 Capsella rubella HOM05D003565 ORTHO05D003943 5.4e-14 81.6 108 50.9
Cc03_g01690 Coffea canephora HOM05D003565 ORTHO05D003943 7.0e-14 81.3 151 41.1
HanXRQChr08g0214541 Helianthus annuus HOM05D003565 ORTHO05D003943 9.2e-14 80.9 147 43.5
CARHR091910 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.2e-13 80.5 101 50.5
CiPaw.02G059200 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.6e-13 80.1 151 43.0
RcHm_v2.0_Chr4g0422991 Rosa chinensis HOM05D003565 ORTHO05D003943 1.6e-13 80.1 157 39.5
Sed0026730 Sechium edule HOM05D003565 ORTHO05D003943 2.0e-13 79.7 110 43.6
Psat1g155160 Pisum sativum HOM05D003565 ORTHO05D003943 5.9e-13 78.2 106 42.5
TWI09G1223 Tripterygium wilfordii HOM05D003565 ORTHO05D003943 5.9e-13 78.2 152 41.4
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 7.8e-13 77.8 94 51.1
HanXRQChr03g0088801 Helianthus annuus HOM05D003565 ORTHO05D003943 7.8e-13 77.8 145 37.2
Aa31LG8G3780 Aethionema arabicum HOM05D003565 ORTHO05D003943 1.0e-12 77.4 104 49.0
ECA240G0767 Erigeron canadensis HOM05D003565 ORTHO05D003943 1.0e-12 77.4 150 41.3
CiPaw.02G058900 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.3e-12 77.0 152 44.1
MD00G1127800 Malus domestica HOM05D003565 ORTHO05D003943 1.7e-12 76.6 158 41.1
CANSAT78G1552 Cannabis sativa HOM05D003565 ORTHO05D003943 2.3e-12 76.3 102 49.0
CSS0008161 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 3.8e-12 75.5 155 40.0
CiPaw.02G059300 Carya illinoinensis HOM05D003565 ORTHO05D003943 3.8e-12 75.5 133 45.9
Lalb_Chr15g0083411 Lupinus albus HOM05D003565 ORTHO05D003943 5.0e-12 75.1 154 39.0
CsaV3_6G023960 Cucumis sativus L. HOM05D000549 ORTHO05D001527 6.6e-12 74.7 93 50.5
Thhalv10021522m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 6.6e-12 74.7 101 46.5
HPP92_006917 Vanilla planifolia HOM05D003565 ORTHO05D003943 8.6e-12 74.3 105 46.7
HanXRQChr13g0420001 Helianthus annuus HOM05D003565 ORTHO05D003943 1.1e-11 73.9 150 38.7
Medtr2g436350 Medicago truncatula HOM05D003565 ORTHO05D003943 1.1e-11 73.9 102 43.1
BcaC09g48620 Brassica carinata HOM05D003565 ORTHO05D003943 1.5e-11 73.6 106 44.3
HanXRQChr03g0089401 Helianthus annuus HOM05D003565 ORTHO05D003943 1.9e-11 73.2 153 37.3
Lsat_1_v5_gn_6_95321 Lactuca sativa HOM05D003565 ORTHO05D003943 1.9e-11 73.2 152 38.2
PSO210G5566 Papaver somniferum HOM05D003565 ORTHO05D003943 2.5e-11 72.8 152 43.4
TPR.G31280 Trifolium pratense HOM05D003565 ORTHO05D003943 2.5e-11 72.8 110 41.8
MELO3C006673.2 Cucumis melo HOM05D003565 ORTHO05D003943 3.3e-11 72.4 162 39.5
Prupe.1G133600 Prunus persica HOM05D003565 ORTHO05D003943 3.3e-11 72.4 156 40.4
Sed0004032 Sechium edule HOM05D003565 ORTHO05D003943 4.3e-11 72.0 162 37.0
HanXRQChr08g0214531 Helianthus annuus HOM05D003565 ORTHO05D003943 7.3e-11 71.2 151 39.7
CARHR150160 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.6e-10 70.1 127 45.7
PSO832G2395 Papaver somniferum HOM05D003565 ORTHO05D003943 1.6e-10 70.1 151 41.7
RcHm_v2.0_Chr4g0422901 Rosa chinensis HOM05D003565 ORTHO05D003943 1.6e-10 70.1 162 37.7
CARHR091930 Cardamine hirsuta HOM05D003565 ORTHO05D003943 2.8e-10 69.3 125 43.2
CsaV3_6G024110 Cucumis sativus L. HOM05D000549 ORTHO05D003943 2.8e-10 69.3 93 48.4
HanXRQChr03g0088811 Helianthus annuus HOM05D003565 ORTHO05D003943 2.8e-10 69.3 127 39.4
Nitab4.5_0005362g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.8e-10 69.3 152 36.8
Nitab4.5_0000493g0090 Nicotiana tabacum HOM05D003565 ORTHO05D003943 4.7e-10 68.6 93 45.2
Nitab4.5_0000194g0050 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.0e-09 67.4 127 40.9
Nitab4.5_0000513g0180 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.0e-09 67.4 158 34.2
AT3G16670 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 1.4e-09 67.0 145 37.2
Glyma.09G043500 Glycine max HOM05D003565 ORTHO05D003943 1.4e-09 67.0 109 39.4
Nitab4.5_0003949g0040 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.8e-09 66.6 150 38.0
QL06p009817 Quercus lobata HOM05D003565 ORTHO05D003943 2.3e-09 66.2 154 39.6
FvH4_4g18430 Fragaria vesca HOM05D003565 ORTHO05D003943 3.1e-09 65.9 147 39.5
Zm00001eb111390 Zea mays HOM05D003565 ORTHO05D003943 3.1e-09 65.9 111 41.4
Nitab4.5_0003949g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 4.0e-09 65.5 150 38.0
Oeu027151.1 Olea europaea HOM05D003565 ORTHO05D003943 6.8e-09 64.7 134 39.6
BcaB04g20866 Brassica carinata HOM05D003565 ORTHO05D003943 8.9e-09 64.3 101 42.6
Lj6g0014140 Lotus japonicus HOM05D003565 ORTHO05D003943 1.2e-08 63.9 156 34.0
Nitab4.5_0000493g0100 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.2e-08 63.9 148 36.5
Ciclev10006409m.g Citrus clementina HOM05D003565 ORTHO05D003943 1.5e-08 63.5 154 37.7
CARHR091920 Cardamine hirsuta HOM05D003565 ORTHO05D003943 2.0e-08 63.2 133 39.1
CARHR150150 Cardamine hirsuta HOM05D003565 ORTHO05D003943 2.0e-08 63.2 133 37.6
PGR004G2038 Punica granatum HOM05D003565 ORTHO05D003943 2.0e-08 63.2 155 36.8
AL3G29590 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 2.6e-08 62.8 145 35.2
HanXRQChr03g0089391 Helianthus annuus HOM05D003565 ORTHO05D003943 3.4e-08 62.4 111 45.0
Oeu026321.1 Olea europaea HOM05D003565 ORTHO05D003943 4.4e-08 62.0 145 35.2
A01p37210 Brassica napus HOM05D003565 ORTHO05D003943 5.8e-08 61.6 83 45.8
Oeu027152.1 Olea europaea HOM05D003565 ORTHO05D003943 5.8e-08 61.6 147 36.7
Carub.0002s1293 Capsella rubella HOM05D003565 ORTHO05D003943 7.5e-08 61.2 145 35.9
Zm00001eb016410 Zea mays HOM05D003565 ORTHO05D003943 7.5e-08 61.2 101 40.6
BcaB04g18928 Brassica carinata HOM05D003565 ORTHO05D003943 9.8e-08 60.8 134 36.6
Phvul.009G249400 Phaseolus vulgaris HOM05D003565 ORTHO05D003943 9.8e-08 60.8 152 35.5
VMungo1309G1767 Vigna mungo HOM05D003565 ORTHO05D003943 9.8e-08 60.8 104 38.5
DCAR_002472 Daucus carota HOM05D003565 ORTHO05D003943 1.3e-07 60.5 137 35.0
A01p37230 Brassica napus HOM05D003565 ORTHO05D003943 2.2e-07 59.7 83 44.6
A03p40060 Brassica napus HOM05D003565 ORTHO05D003943 2.2e-07 59.7 144 38.2
BraA03t13156Z Brassica rapa HOM05D003565 ORTHO05D003943 2.2e-07 59.7 144 38.2
Ciclev10006885m.g Citrus clementina HOM05D003565 ORTHO05D003943 2.9e-07 59.3 152 34.2
HanXRQChr03g0089351 Helianthus annuus HOM05D003565 ORTHO05D003943 2.9e-07 59.3 144 36.1
Os07g0674500 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 2.9e-07 59.3 155 37.4
arahy.Tifrunner.gnm1.ann1.VE1P60 Arachis hypogaea HOM05D003565 ORTHO05D003943 3.7e-07 58.9 98 44.9
Carub.0003s1640 Capsella rubella HOM05D003565 ORTHO05D003943 4.9e-07 58.5 145 34.5
FAN17G0998 Fragaria x ananassa HOM05D003565 ORTHO05D003943 8.3e-07 57.8 158 33.5
Os07g0674400 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 1.1e-06 57.4 148 36.5
QL06p009834 Quercus lobata HOM05D003565 ORTHO05D003943 1.1e-06 57.4 154 34.4
arahy.Tifrunner.gnm1.ann1.Q570SP Arachis hypogaea HOM05D003565 ORTHO05D003943 3.2e-06 55.8 149 36.9
DCAR_030517 Daucus carota HOM05D003565 ORTHO05D003943 3.2e-06 55.8 157 35.7
Thhalv10021613m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 3.2e-06 55.8 106 41.5
HanXRQChr01g0002181 Helianthus annuus HOM05D003565 ORTHO05D003943 3.2e-06 55.8 149 32.9
DCAR_022430 Daucus carota HOM05D003565 ORTHO05D003943 4.1e-06 55.5 160 33.8
ECA247G1649 Erigeron canadensis HOM05D023078 ORTHO05D003943 4.1e-06 55.5 125 39.2
Os03g0341600 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 5.4e-06 55.1 126 34.9
C03p48610 Brassica napus HOM05D003565 ORTHO05D003943 7.0e-06 54.7 143 36.4
DCAR_027061 Daucus carota HOM05D003565 ORTHO05D003943 7.0e-06 54.7 108 39.8


User provided reference genes

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