Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p007731 Quercus lobata HOM05D007775 ORTHO05D009858 3.1e-170 601.7 292 100.0
Cfa015361 Carpinus fangiana HOM05D007775 ORTHO05D009858 1.7e-115 419.9 289 73.4
CiPaw.02G085200 Carya illinoinensis HOM05D007775 ORTHO05D009858 2.7e-102 375.9 279 68.8
Dinv38311 Davidia involucrata HOM05D007775 ORTHO05D009858 7.5e-92 341.3 302 58.9
Prupe.1G140100 Prunus persica HOM05D007775 ORTHO05D009858 2.4e-90 336.3 282 61.0
RcHm_v2.0_Chr4g0421471 Rosa chinensis HOM05D007775 ORTHO05D009858 1.9e-87 326.6 295 58.0
MD13G1171700 Malus domestica HOM05D007775 ORTHO05D009858 4.2e-87 325.5 284 59.9
TAR362G1316 Trochodendron aralioides HOM05D007775 ORTHO05D009858 1.2e-86 323.9 288 56.9
Thecc.04G279800 Theobroma cacao HOM05D007775 ORTHO05D009858 4.7e-86 322.0 295 55.6
FvH4_4g17570 Fragaria vesca HOM05D007775 ORTHO05D009858 5.2e-85 318.5 297 57.2
COL.COLO4_13909 Corchorus olitorius HOM05D007775 ORTHO05D009858 8.8e-85 317.8 295 56.6
FAN07G2931 Fragaria x ananassa HOM05D007775 ORTHO05D009858 4.4e-84 315.5 296 57.1
ClCG06G005300 Citrullus lanatus HOM05D007775 ORTHO05D009858 7.5e-84 314.7 285 56.8
Ciclev10005542m.g Citrus clementina HOM05D007775 ORTHO05D009858 3.7e-83 312.4 300 56.7
TWI09G0118 Tripterygium wilfordii HOM05D007775 ORTHO05D009858 1.2e-81 307.4 283 58.7
MELO3C021348.2 Cucumis melo HOM05D007775 ORTHO05D009858 2.0e-81 306.6 299 54.2
PGR031G0649 Punica granatum HOM05D007775 ORTHO05D009858 4.5e-81 305.4 287 57.5
Aa31LG5G20500 Aethionema arabicum HOM05D007775 ORTHO05D009858 7.7e-81 304.7 288 54.9
Potri.008G215200 Populus trichocarpa HOM05D007775 ORTHO05D009858 1.3e-80 303.9 302 55.6
Sabra08G0155600 Salix brachista HOM05D007775 ORTHO05D009858 2.3e-80 303.1 298 56.0
GSVIVG01017782001 Vitis vinifera HOM05D007775 ORTHO05D009858 2.3e-80 303.1 269 58.7
Actinidia40242 Actinidia chinensis HOM05D007775 ORTHO05D009858 2.5e-79 299.7 295 53.6
CsaV3_6G017340 Cucumis sativus L. HOM05D007775 ORTHO05D009858 7.3e-79 298.1 295 54.2
THA.LOC104820248 Tarenaya hassleriana HOM05D007775 ORTHO05D009858 7.3e-79 298.1 286 52.1
AT2G39100 Arabidopsis thaliana HOM05D007775 ORTHO05D009858 3.0e-77 292.7 295 53.9
Gohir.D10G168200 Gossypium hirsutum HOM05D007775 ORTHO05D009858 3.0e-77 292.7 301 52.2
Rhsim04G0218300 Rhododendron simsii HOM05D007775 ORTHO05D009858 5.2e-77 292.0 306 53.9
CARHR133870 Cardamine hirsuta HOM05D007775 ORTHO05D009858 8.9e-77 291.2 282 54.3
Sp4g21450 Schrenkiella parvula HOM05D007775 ORTHO05D009858 1.5e-76 290.4 285 53.7
Gorai.011G187800 Gossypium raimondii HOM05D007775 ORTHO05D009858 2.0e-76 290.0 302 51.7
Nn3g16301 Nelumbo nucifera HOM05D007775 ORTHO05D009858 1.7e-75 287.0 290 54.8
FAN12G2546 Fragaria x ananassa HOM05D007775 ORTHO05D009858 1.1e-74 284.3 276 55.8
Duzib151G1205 Durio zibethinus HOM05D007775 ORTHO05D009858 1.4e-74 283.9 274 54.0
Eucgr.B01278 Eucalyptus grandis HOM05D007775 ORTHO05D009858 1.8e-74 283.5 290 54.5
Thhalv10017000m.g Eutrema salsugineum HOM05D007775 ORTHO05D009858 4.1e-74 282.3 302 52.0
Cc03_g02150 Coffea canephora HOM05D007775 ORTHO05D009858 1.0e-72 277.7 300 49.0
Cpa.g.sc197.12 Carica papaya HOM05D007775 ORTHO05D009858 1.3e-72 277.3 264 53.8
CANSAT78G0244 Cannabis sativa HOM05D007775 ORTHO05D009858 3.0e-72 276.2 269 53.2
Carub.0004s2115 Capsella rubella HOM05D007775 ORTHO05D009858 5.0e-72 275.4 284 51.8
Sed0017003 Sechium edule HOM05D007775 ORTHO05D009858 5.0e-72 275.4 272 54.0
C04p67030 Brassica napus HOM05D007775 ORTHO05D009858 4.3e-71 272.3 280 51.8
BraA04t18439Z Brassica rapa HOM05D007775 ORTHO05D009858 4.3e-71 272.3 280 51.8
PGSC0003DMG400030783 Solanum tuberosum HOM05D007775 ORTHO05D009858 4.3e-71 272.3 279 52.7
Solyc06g054580.4 Solanum lycopersicum HOM05D007775 ORTHO05D009858 1.2e-70 270.8 279 53.0
BolC4t28205H Brassica oleracea HOM05D007775 ORTHO05D009858 1.6e-70 270.4 282 51.8
Atru.chr4.2786 Acer truncatum HOM05D007775 ORTHO05D009858 2.1e-70 270.0 269 52.4
MBI19_g01943_MAGBIO Magnolia biondii HOM05D007775 ORTHO05D009858 1.8e-69 266.9 279 50.9
Manes.15G015200 Manihot esculenta HOM05D007775 ORTHO05D009858 6.8e-69 265.0 271 57.2
Sopen06g019650 Solanum pennellii HOM05D007775 ORTHO05D009858 6.8e-69 265.0 279 52.0
Lsat_1_v5_gn_5_52881 Lactuca sativa HOM05D007775 ORTHO05D009858 1.2e-68 264.2 291 48.5
Lj6A671T60 Lonicera japonica HOM05D007775 ORTHO05D009858 3.4e-68 262.7 280 52.1
arahy.Tifrunner.gnm1.ann1.J8QG6N Arachis hypogaea HOM05D007775 ORTHO05D009858 3.5e-65 252.7 299 47.8
arahy.Tifrunner.gnm1.ann1.KJPE0P Arachis hypogaea HOM05D007775 ORTHO05D009858 2.3e-64 250.0 308 46.8
Gohir.A10G161700 Gossypium hirsutum HOM05D007775 ORTHO05D009858 5.0e-64 248.8 280 50.0
CAN.G256.16 Capsicum annuum HOM05D007775 ORTHO05D009858 3.6e-62 242.7 274 50.0
HanXRQChr03g0080871 Helianthus annuus HOM05D007775 ORTHO05D009858 1.8e-61 240.4 301 47.5
PSO210G6602 Papaver somniferum HOM05D007775 ORTHO05D009858 3.1e-61 239.6 309 44.0
Ah.13g074550 Amaranthus hybridus HOM05D007775 ORTHO05D009858 1.5e-60 237.3 296 45.3
Oeu021116.1 Olea europaea HOM05D007775 ORTHO05D009858 1.5e-60 237.3 255 48.2
Nitab4.5_0002148g0040 Nicotiana tabacum HOM05D007775 ORTHO05D009858 5.8e-60 235.3 257 50.6
Lalb_Chr13g0303771 Lupinus albus HOM05D007775 ORTHO05D009858 1.3e-59 234.2 299 44.8
Nitab4.5_0001459g0060 Nicotiana tabacum HOM05D007775 ORTHO05D009858 1.7e-59 233.8 254 50.4
A04p29770 Brassica napus HOM05D007775 ORTHO05D009858 1.1e-55 221.1 243 49.0
Peaxi162Scf00033g01324 Petunia axillaris HOM05D007775 ORTHO05D009858 7.3e-55 218.4 275 45.8
QL06p007898 Quercus lobata HOM05D007775 ORTHO05D009858 9.9e-52 208.0 118 89.8
DCAR_024553 Daucus carota HOM05D007775 ORTHO05D009858 2.9e-51 206.5 232 46.1
AL4G36400 Arabidopsis lyrata HOM05D007775 ORTHO05D009858 3.8e-51 206.1 218 52.3
Aqoxy2G03074 Aquilegia oxysepala HOM05D007775 ORTHO05D009858 3.3e-47 193.0 218 50.0
FAN12G2785 Fragaria x ananassa HOM05D007775 ORTHO05D009858 7.3e-47 191.8 205 52.7
BcaC02g12905 Brassica carinata HOM05D007775 ORTHO05D009858 9.6e-47 191.4 273 42.9
ECA240G4119 Erigeron canadensis HOM05D007775 ORTHO05D009858 1.1e-45 188.0 255 41.6
Haze_01245 Corylus avellana HOM05D007775 ORTHO05D009858 2.0e-44 183.7 624 28.5
Sc06g0007440 Simmondsia chinensis HOM05D007775 ORTHO05D009858 3.2e-42 176.4 271 39.5
ATR0706G202 Amborella trichopoda HOM05D007775 ORTHO05D009858 1.9e-39 167.2 221 44.3
AL92U10060 Arabidopsis lyrata HOM05D007775 ORTHO05D009858 2.9e-35 153.3 188 47.9
SMO147G0036 Selaginella moellendorffii HOM05D007775 ORTHO05D009858 5.4e-34 149.1 316 32.3
Pp3c21_11960 Physcomitrium patens HOM05D007775 ORTHO05D009858 1.9e-31 140.6 306 31.7
vmacro08108 Vaccinium macrocarpon HOM05D007775 ORTHO05D009858 5.8e-28 129.0 90 66.7
CSS0035717 Camellia sinensis var. sinensis HOM05D007775 ORTHO05D009858 1.9e-23 114.0 96 59.4
CSS0050081 Camellia sinensis var. sinensis HOM05D007775 ORTHO05D009858 2.5e-23 113.6 84 65.5
SEGI_15450 Sequoiadendron giganteum HOM05D007775 ORTHO05D009858 2.1e-22 110.5 127 44.1
CSS0036115 Camellia sinensis var. sinensis HOM05D007775 ORTHO05D009858 6.2e-22 109.0 96 58.3
Prupe.8G004900 Prunus persica HOM05D007775 ORTHO05D009858 3.4e-20 103.2 85 60.0
MSTRG.10078 Avicennia marina HOM05D007775 ORTHO05D009858 1.6e-17 94.4 117 41.9
COL.COLO4_10908 Corchorus olitorius HOM05D007775 ORTHO05D009858 5.1e-16 89.4 76 59.2
SEGI_08073 Sequoiadendron giganteum HOM05D007775 ORTHO05D009858 2.8e-14 83.6 147 34.7
QL03p005837 Quercus lobata HOM05D006625 ORTHO05D008060 5.7e-07 59.3 88 36.4
arahy.Tifrunner.gnm1.ann1.P1SK02 Arachis hypogaea HOM05D006625 ORTHO05D008060 6.3e-06 55.8 278 23.0
HPP92_006725 Vanilla planifolia HOM05D004084 ORTHO05D004662 6.3e-06 55.8 59 44.1
arahy.Tifrunner.gnm1.ann1.A4Z4CH Arachis hypogaea HOM05D006625 ORTHO05D008060 8.2e-06 55.5 278 22.7
CDE11G0350 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 8.2e-06 55.5 56 44.6
Thhalv10014482m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 8.2e-06 55.5 51 45.1
HPP92_012047 Vanilla planifolia HOM05D000187 ORTHO05D000230 8.2e-06 55.5 44 43.2


User provided reference genes

Program Settings