Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p007393 Quercus lobata HOM05D003864 ORTHO05D004658 9.5e-59 229.9 114 100.0
Thecc.04G277700 Theobroma cacao HOM05D003864 ORTHO05D004658 2.4e-38 162.2 106 77.4
CiPaw.02G086600 Carya illinoinensis HOM05D003864 ORTHO05D004658 7.1e-38 160.6 86 86.0
COL.COLO4_13927 Corchorus olitorius HOM05D003864 ORTHO05D004658 9.2e-38 160.2 86 84.9
Lj6A670T81 Lonicera japonica HOM05D003864 ORTHO05D004658 1.6e-37 159.5 106 75.5
Gohir.A10G101440 Gossypium hirsutum HOM05D003864 ORTHO05D004658 2.1e-37 159.1 106 74.5
Gohir.D10G166700 Gossypium hirsutum HOM05D003864 ORTHO05D004658 2.1e-37 159.1 106 74.5
Gorai.011G185900 Gossypium raimondii HOM05D003864 ORTHO05D004658 2.1e-37 159.1 106 74.5
Haze_01063 Corylus avellana HOM05D003864 ORTHO05D004658 2.7e-37 158.7 86 83.7
Cfa015492 Carpinus fangiana HOM05D003864 ORTHO05D004658 4.6e-37 157.9 86 83.7
Ciclev10005325m.g Citrus clementina HOM05D003864 ORTHO05D004658 4.6e-37 157.9 106 73.6
Hma1.2p1_0150F.1_g066600 Hydrangea macrophylla HOM05D003864 ORTHO05D004658 4.6e-37 157.9 86 86.0
Nn4g25986 Nelumbo nucifera HOM05D003864 ORTHO05D004658 6.0e-37 157.5 86 84.9
Duzib151G0071 Durio zibethinus HOM05D003864 ORTHO05D004658 7.8e-37 157.1 106 74.5
Nitab4.5_0001054g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 1.3e-36 156.4 86 83.7
Rhsim02G0013600 Rhododendron simsii HOM05D003864 ORTHO05D004658 1.3e-36 156.4 87 81.6
PGSC0003DMG400030786 Solanum tuberosum HOM05D003864 ORTHO05D004658 1.3e-36 156.4 86 83.7
Potri.008G204700 Populus trichocarpa HOM05D003864 ORTHO05D004658 1.7e-36 156.0 84 86.9
TAR633G1069 Trochodendron aralioides HOM05D003864 ORTHO05D004658 1.7e-36 156.0 84 86.9
CAN.G256.9 Capsicum annuum HOM05D003864 ORTHO05D004658 2.3e-36 155.6 86 83.7
Sabra08G0157300 Salix brachista HOM05D003864 ORTHO05D004658 3.0e-36 155.2 84 85.7
Aqoxy2G03115 Aquilegia oxysepala HOM05D003864 ORTHO05D004658 5.1e-36 154.5 86 82.6
Nitab4.5_0000784g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 6.6e-36 154.1 104 74.0
Actinidia23428 Actinidia chinensis HOM05D003864 ORTHO05D004658 8.6e-36 153.7 106 71.7
Nn3g21324 Nelumbo nucifera HOM05D003864 ORTHO05D004658 8.6e-36 153.7 84 84.5
Manes.15G016900 Manihot esculenta HOM05D003864 ORTHO05D004658 1.1e-35 153.3 104 72.1
TAR362G0395 Trochodendron aralioides HOM05D003864 ORTHO05D004658 1.1e-35 153.3 84 86.9
vmacro08202 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 1.5e-35 152.9 86 80.2
ClCG06G005360 Citrullus lanatus HOM05D003864 ORTHO05D004658 1.9e-35 152.5 102 73.5
Cc03_g02350 Coffea canephora HOM05D003864 ORTHO05D004658 1.9e-35 152.5 104 74.0
Oeu044793.1 Olea europaea HOM05D003864 ORTHO05D004658 2.5e-35 152.1 86 82.6
Peaxi162Scf00033g01410 Petunia axillaris HOM05D003864 ORTHO05D004658 2.5e-35 152.1 86 83.7
THA.LOC104820237 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 2.5e-35 152.1 104 72.1
Eucgr.B01266 Eucalyptus grandis HOM05D003864 ORTHO05D004658 3.3e-35 151.8 86 79.1
Nitab4.5_0001459g0140 Nicotiana tabacum HOM05D003864 ORTHO05D004658 3.3e-35 151.8 86 81.4
GSVIVG01017804001 Vitis vinifera HOM05D003864 ORTHO05D004658 4.3e-35 151.4 82 84.1
MD13G1173800 Malus domestica HOM05D003864 ORTHO05D004658 5.6e-35 151.0 82 84.1
PGR031G0559 Punica granatum HOM05D003864 ORTHO05D004658 7.3e-35 150.6 84 81.0
Peaxi162Scf00386g00316 Petunia axillaris HOM05D003864 ORTHO05D004658 9.5e-35 150.2 89 76.4
DCAR_027110 Daucus carota HOM05D003864 ORTHO05D004658 1.6e-34 149.4 106 67.0
Migut.G00209 Erythranthe guttata HOM05D003864 ORTHO05D004658 1.6e-34 149.4 102 73.5
Sed0015457 Sechium edule HOM05D003864 ORTHO05D004658 1.6e-34 149.4 102 71.6
SGA_v2.0_scaffold57G20242 Striga asiatica HOM05D003864 ORTHO05D004658 1.6e-34 149.4 82 84.1
MD16G1174800 Malus domestica HOM05D003864 ORTHO05D004658 2.1e-34 149.1 82 82.9
TWI53G0015 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 2.1e-34 149.1 106 69.8
TWI53G1008 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 2.1e-34 149.1 106 69.8
CSS0001944 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 2.8e-34 148.7 86 79.1
CSS0038005 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 2.8e-34 148.7 86 79.1
vmacro15256 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 2.8e-34 148.7 87 77.0
vmacro22597 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 2.8e-34 148.7 87 77.0
Actinidia00050 Actinidia chinensis HOM05D003864 ORTHO05D004658 4.7e-34 147.9 86 76.7
Sed0008062 Sechium edule HOM05D003864 ORTHO05D004658 4.7e-34 147.9 102 70.6
Solyc01g067630.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 4.7e-34 147.9 104 71.2
CsaV3_6G017400 Cucumis sativus L. HOM05D003864 ORTHO05D004658 6.2e-34 147.5 102 70.6
PSO210G7573 Papaver somniferum HOM05D003864 ORTHO05D004658 6.2e-34 147.5 86 81.4
MELO3C021355.2 Cucumis melo HOM05D003864 ORTHO05D004658 8.1e-34 147.1 102 71.6
LjContig00389g0005087 Lotus japonicus HOM05D003864 ORTHO05D004658 8.1e-34 147.1 82 82.9
CiPaw.01G152900 Carya illinoinensis HOM05D003864 ORTHO05D004658 1.1e-33 146.7 86 77.9
Medtr2g020190 Medicago truncatula HOM05D003864 ORTHO05D004658 1.1e-33 146.7 82 81.7
Manes.03G191300 Manihot esculenta HOM05D003864 ORTHO05D004658 1.8e-33 146.0 84 78.6
PSO170G3769 Papaver somniferum HOM05D003864 ORTHO05D004658 1.8e-33 146.0 86 80.2
Prupe.1G142000 Prunus persica HOM05D003864 ORTHO05D004658 1.8e-33 146.0 82 81.7
Atru.chr4.2755 Acer truncatum HOM05D003864 ORTHO05D004658 3.1e-33 145.2 81 82.7
Lalb_Chr07g0188241 Lupinus albus HOM05D003864 ORTHO05D004658 3.1e-33 145.2 82 80.5
Phvul.002G188400 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 3.1e-33 145.2 105 68.6
arahy.Tifrunner.gnm1.ann1.CLS5KG Arachis hypogaea HOM05D003864 ORTHO05D004658 4.0e-33 144.8 82 82.9
Phvul.006G161500 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 4.0e-33 144.8 82 81.7
THA.LOC104821766 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 4.0e-33 144.8 104 67.3
TPR.G1486 Trifolium pratense HOM05D003864 ORTHO05D004658 6.8e-33 144.1 82 79.3
VMungo0251G3051 Vigna mungo HOM05D003864 ORTHO05D004658 6.8e-33 144.1 94 70.2
AL4G36380 Arabidopsis lyrata HOM05D003864 ORTHO05D004658 8.9e-33 143.7 104 68.3
MSTRG.10054 Avicennia marina HOM05D003864 ORTHO05D004658 1.2e-32 143.3 82 80.5
FvH4_4g17200 Fragaria vesca HOM05D003864 ORTHO05D004658 1.5e-32 142.9 102 69.6
RcHm_v2.0_Chr4g0421021 Rosa chinensis HOM05D003864 ORTHO05D004658 1.5e-32 142.9 102 68.6
CARHR133840 Cardamine hirsuta HOM05D003864 ORTHO05D004658 2.0e-32 142.5 104 67.3
Thhalv10016876m.g Eutrema salsugineum HOM05D003864 ORTHO05D004658 2.0e-32 142.5 104 66.3
Lj4g0016445 Lotus japonicus HOM05D003864 ORTHO05D004658 2.0e-32 142.5 105 68.6
Ca_00573_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 2.6e-32 142.1 82 76.8
FAN22G0711 Fragaria x ananassa HOM05D003864 ORTHO05D004658 3.4e-32 141.7 82 78.0
FAN07G1078 Fragaria x ananassa HOM05D003864 ORTHO05D004658 4.4e-32 141.4 82 78.0
FAN17G0790 Fragaria x ananassa HOM05D003864 ORTHO05D004658 4.4e-32 141.4 82 78.0
Glyma.15G097900 Glycine max HOM05D003864 ORTHO05D004658 4.4e-32 141.4 83 80.7
Nitab4.5_0004537g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 4.4e-32 141.4 104 67.3
Hund20596 Selenicereus undatus HOM05D003864 ORTHO05D004658 4.4e-32 141.4 92 70.7
BcaB01g03648 Brassica carinata HOM05D003864 ORTHO05D004658 5.8e-32 141.0 104 65.4
C04p08680 Brassica napus HOM05D003864 ORTHO05D004658 5.8e-32 141.0 104 66.3
AT2G39080 Arabidopsis thaliana HOM05D003864 ORTHO05D004658 7.6e-32 140.6 104 67.3
C03p25940 Brassica napus HOM05D003864 ORTHO05D004658 9.9e-32 140.2 104 65.4
Psat1g187240 Pisum sativum HOM05D003864 ORTHO05D004658 9.9e-32 140.2 80 80.0
AUR62002937 Chenopodium quinoa HOM05D003864 ORTHO05D004658 1.3e-31 139.8 82 78.0
AUR62007746 Chenopodium quinoa HOM05D003864 ORTHO05D004658 1.3e-31 139.8 82 78.0
Glyma.13G215300 Glycine max HOM05D003864 ORTHO05D004658 1.3e-31 139.8 82 78.0
Cpa.g.sc1008.4 Carica papaya HOM05D003864 ORTHO05D004658 1.7e-31 139.4 112 64.3
Lalb_Chr20g0118111 Lupinus albus HOM05D003864 ORTHO05D004658 1.7e-31 139.4 82 76.8
arahy.Tifrunner.gnm1.ann1.858I9V Arachis hypogaea HOM05D003864 ORTHO05D004658 2.2e-31 139.0 82 76.8
A03p21870 Brassica napus HOM05D003864 ORTHO05D004658 2.2e-31 139.0 104 64.4
BraA03t11423Z Brassica rapa HOM05D003864 ORTHO05D004658 2.2e-31 139.0 104 64.4
CDE05G0625 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 2.2e-31 139.0 84 73.8
Sc19g0004950 Simmondsia chinensis HOM05D003864 ORTHO05D004658 2.2e-31 139.0 105 66.7
EL10Ac6g14524 Beta vulgaris HOM05D003864 ORTHO05D004658 2.9e-31 138.7 86 75.6
Glyma.08G088600 Glycine max HOM05D003864 ORTHO05D004658 2.9e-31 138.7 82 76.8
ATR0706G015 Amborella trichopoda HOM05D003864 ORTHO05D004658 3.8e-31 138.3 86 75.6
BcaB02g09145 Brassica carinata HOM05D003864 ORTHO05D004658 3.8e-31 138.3 107 65.4
PGR004G1016 Punica granatum HOM05D003864 ORTHO05D004658 3.8e-31 138.3 84 71.4
A05p07200 Brassica napus HOM05D003864 ORTHO05D004658 4.9e-31 137.9 107 62.6
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 4.9e-31 137.9 107 62.6
BraA05t19685Z Brassica rapa HOM05D003864 ORTHO05D004658 4.9e-31 137.9 107 62.6
DCAR_002443 Daucus carota HOM05D003864 ORTHO05D004658 4.9e-31 137.9 86 73.3
BcaC02g12030 Brassica carinata HOM05D003864 ORTHO05D004658 6.4e-31 137.5 104 65.4
BcaC02g12038 Brassica carinata HOM05D003864 ORTHO05D004658 6.4e-31 137.5 107 63.6
Carub.0004s2113 Capsella rubella HOM05D003864 ORTHO05D004658 6.4e-31 137.5 104 63.5
CDE12G0314 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 6.4e-31 137.5 104 67.3
arahy.Tifrunner.gnm1.ann1.WPBE4U Arachis hypogaea HOM05D003864 ORTHO05D004658 8.4e-31 137.1 82 76.8
SGA_v2.0_scaffold89G27550 Striga asiatica HOM05D003864 ORTHO05D004658 8.4e-31 137.1 82 76.8
Lsat_1_v5_gn_5_56881 Lactuca sativa HOM05D003864 ORTHO05D004658 1.4e-30 136.3 84 73.8
Medtr4g094742 Medicago truncatula HOM05D003864 ORTHO05D004658 1.4e-30 136.3 105 64.8
Aa31LG5G20520 Aethionema arabicum HOM05D003864 ORTHO05D004658 2.4e-30 135.6 104 57.7
Glyma.05G133900 Glycine max HOM05D003864 ORTHO05D004658 2.4e-30 135.6 105 64.8
Sp4g21430 Schrenkiella parvula HOM05D003864 ORTHO05D004658 2.4e-30 135.6 104 64.4
Lalb_Chr18g0055711 Lupinus albus HOM05D003864 ORTHO05D004658 3.2e-30 135.2 82 74.4
C04p08610 Brassica napus HOM05D003864 ORTHO05D004658 4.1e-30 134.8 84 71.4
Ah.12g064180 Amaranthus hybridus HOM05D003864 ORTHO05D004658 5.4e-30 134.4 82 75.6
Os01g0367400 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 7.1e-30 134.0 84 69.0
unitig_748.g8370 Utricularia gibba HOM05D003864 ORTHO05D004658 7.1e-30 134.0 102 62.7
TPR.G23836 Trifolium pratense HOM05D003864 ORTHO05D004658 1.6e-29 132.9 105 63.8
arahy.Tifrunner.gnm1.ann1.ZU35GG Arachis hypogaea HOM05D003864 ORTHO05D004658 2.1e-29 132.5 75 81.3
ECA240G1720 Erigeron canadensis HOM05D003864 ORTHO05D004658 2.1e-29 132.5 84 71.4
Os01g0367100 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 2.1e-29 132.5 94 64.9
Rhsim04G0216400 Rhododendron simsii HOM05D003864 ORTHO05D004658 2.7e-29 132.1 131 51.9
CDE01G0506 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 3.5e-29 131.7 104 62.5
Zm00001eb131760 Zea mays HOM05D003864 ORTHO05D004658 3.5e-29 131.7 94 64.9
HPP92_017180 Vanilla planifolia HOM05D003864 ORTHO05D004658 4.6e-29 131.3 84 66.7
Ca_18234_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 7.8e-29 130.6 82 72.0
HanXRQChr13g0411221 Helianthus annuus HOM05D003864 ORTHO05D004658 1.3e-28 129.8 86 69.8
Mapoly0090s0075 Marchantia polymorpha HOM05D003864 ORTHO05D004658 1.1e-27 126.7 84 65.5
MBI19_g26585_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 1.9e-27 125.9 86 72.1
Zm00001eb341670 Zea mays HOM05D003864 ORTHO05D004658 9.6e-27 123.6 104 59.6
BolC4t22460H Brassica oleracea HOM05D003864 ORTHO05D004658 1.3e-23 113.2 90 64.4
Pp3c12_8620 Physcomitrium patens HOM05D003864 ORTHO05D004658 1.4e-22 109.8 82 56.1
AagrBONN_evm.TU.Sc2ySwM_344.1910 Anthoceros agrestis HOM05D003864 ORTHO05D004658 6.0e-21 104.4 81 56.8
Dinv38324 Davidia involucrata HOM05D003864 ORTHO05D004658 7.8e-21 104.0 76 69.7
Pp3c13_19760 Physcomitrium patens HOM05D003864 ORTHO05D004658 7.8e-21 104.0 82 52.4
RcHm_v2.0_Chr4g0421081 Rosa chinensis HOM05D003864 ORTHO05D004658 1.1e-17 93.6 56 75.0
CSS0015623 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 1.8e-17 92.8 51 82.4
SHI00297 Sapria himalayana HOM05D003864 ORTHO05D004658 1.8e-17 92.8 161 37.9
VMungo0540G0878 Vigna mungo HOM05D006883 ORTHO05D008624 1.8e-17 92.8 53 83.0
SMO356G0587 Selaginella moellendorffii HOM05D003864 ORTHO05D004658 6.9e-17 90.9 86 48.8
CBR_g37156 Chara braunii HOM05D003864 ORTHO05D004658 1.1e-14 83.6 82 42.7
FAN12G3853 Fragaria x ananassa HOM05D003864 ORTHO05D004658 2.7e-13 79.0 51 72.5
Zm00001eb400060 Zea mays HOM05D003864 ORTHO05D004658 6.0e-13 77.8 57 64.9
Dinv02075 Davidia involucrata HOM05D003864 ORTHO05D035062 7.4e-11 70.9 52 63.5
Dinv08007 Davidia involucrata HOM05D003864 ORTHO05D035062 4.8e-10 68.2 50 64.0
MCO15G076 Micromonas commoda HOM05D003864 ORTHO05D004658 6.9e-09 64.3 97 32.0
PRCOL_00006073 Prasinoderma coloniale HOM05D003864 ORTHO05D004658 2.0e-08 62.8 90 33.3
Cre13.g608000 Chlamydomonas reinhardtii HOM05D003864 ORTHO05D004658 3.4e-08 62.0 102 37.3
MBI19_g44903_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 6.4e-07 57.8 84 45.2
SEGI_13555 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 4.2e-06 55.1 66 45.5


User provided reference genes

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