Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p006731 Quercus lobata HOM05D004069 ORTHO05D004699 3.7e-60 234.6 111 100.0
Sabra08G0163600 Salix brachista HOM05D004069 ORTHO05D004699 1.5e-48 196.1 105 83.8
PGR004G0388 Punica granatum HOM05D004069 ORTHO05D004699 2.5e-48 195.3 105 81.9
Cfa015517 Carpinus fangiana HOM05D004069 ORTHO05D004699 3.3e-48 194.9 105 82.9
Potri.008G196600 Populus trichocarpa HOM05D004069 ORTHO05D004699 9.6e-48 193.4 105 82.9
CSS0012120 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 1.2e-47 193.0 105 82.9
Eucgr.H03663 Eucalyptus grandis HOM05D004069 ORTHO05D004699 1.2e-47 193.0 105 81.9
CiPaw.01G155300 Carya illinoinensis HOM05D004069 ORTHO05D004699 2.8e-47 191.8 105 82.9
Ciclev10006197m.g Citrus clementina HOM05D004069 ORTHO05D004699 4.7e-47 191.0 104 80.8
TWI73G0788 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 4.7e-47 191.0 105 81.0
VMungo0331G0279 Vigna mungo HOM05D004069 ORTHO05D004699 4.7e-47 191.0 105 81.0
Potri.010G026000 Populus trichocarpa HOM05D004069 ORTHO05D004699 8.1e-47 190.3 105 81.0
TWI09G1514 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 8.1e-47 190.3 105 81.0
Atru.chr4.2722 Acer truncatum HOM05D004069 ORTHO05D004699 1.8e-46 189.1 105 81.0
Glyma.01G145000 Glycine max HOM05D004069 ORTHO05D004699 2.4e-46 188.7 105 81.0
Medtr8g035900 Medicago truncatula HOM05D004069 ORTHO05D004699 2.4e-46 188.7 105 81.0
GSVIVG01017834001 Vitis vinifera HOM05D004069 ORTHO05D004699 2.4e-46 188.7 105 80.0
vmacro08226 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 3.1e-46 188.3 105 80.0
Psat4g149640 Pisum sativum HOM05D004069 ORTHO05D004699 4.0e-46 188.0 107 79.4
Sabra10G0013600 Salix brachista HOM05D004069 ORTHO05D004699 5.2e-46 187.6 105 81.0
Cpa.g.sc16.88 Carica papaya HOM05D004069 ORTHO05D004699 6.9e-46 187.2 105 79.0
CiPaw.02G087900 Carya illinoinensis HOM05D004069 ORTHO05D004699 6.9e-46 187.2 105 79.0
Glyma.03G021800 Glycine max HOM05D004069 ORTHO05D004699 6.9e-46 187.2 105 80.0
Lj3g0025312 Lotus japonicus HOM05D004069 ORTHO05D004699 9.0e-46 186.8 105 79.0
arahy.Tifrunner.gnm1.ann1.EYX6XU Arachis hypogaea HOM05D004069 ORTHO05D004699 1.5e-45 186.0 105 79.0
CANSAT54G0205 Cannabis sativa HOM05D004069 ORTHO05D004699 1.5e-45 186.0 105 79.0
Lalb_Chr07g0189611 Lupinus albus HOM05D004069 ORTHO05D004699 1.5e-45 186.0 105 79.0
VMungo0331G0995 Vigna mungo HOM05D004069 ORTHO05D004699 1.5e-45 186.0 105 78.1
Manes.15G019000 Manihot esculenta HOM05D004069 ORTHO05D004699 2.0e-45 185.7 105 80.0
TPR.G36608 Trifolium pratense HOM05D004069 ORTHO05D004699 2.6e-45 185.3 107 78.5
arahy.Tifrunner.gnm1.ann1.J8E67M Arachis hypogaea HOM05D004069 ORTHO05D004699 3.4e-45 184.9 105 78.1
MD10G1048000 Malus domestica HOM05D004069 ORTHO05D004699 3.4e-45 184.9 104 78.8
Nn4g26079 Nelumbo nucifera HOM05D004069 ORTHO05D004699 3.4e-45 184.9 103 78.6
THA.LOC104818836 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 3.4e-45 184.9 105 76.2
CsaV3_1G037430 Cucumis sativus L. HOM05D004069 ORTHO05D004699 4.4e-45 184.5 105 76.2
Manes.03G189600 Manihot esculenta HOM05D004069 ORTHO05D004699 4.4e-45 184.5 105 79.0
Actinidia23443 Actinidia chinensis HOM05D004069 ORTHO05D004699 5.8e-45 184.1 105 76.2
MD05G1041600 Malus domestica HOM05D004069 ORTHO05D004699 5.8e-45 184.1 104 79.8
Phvul.010G048500 Phaseolus vulgaris HOM05D004069 ORTHO05D004699 5.8e-45 184.1 105 77.1
Prupe.1G144300 Prunus persica HOM05D004069 ORTHO05D004699 5.8e-45 184.1 104 79.8
Hund07638 Selenicereus undatus HOM05D004069 ORTHO05D004699 5.8e-45 184.1 105 78.1
BcaB01g05275 Brassica carinata HOM05D004069 ORTHO05D004699 7.6e-45 183.7 105 78.1
BcaC03g13618 Brassica carinata HOM05D004069 ORTHO05D004699 7.6e-45 183.7 105 78.1
A03p09140 Brassica napus HOM05D004069 ORTHO05D004699 7.6e-45 183.7 105 78.1
A10p20810 Brassica napus HOM05D004069 ORTHO05D004699 7.6e-45 183.7 105 78.1
C03p10670 Brassica napus HOM05D004069 ORTHO05D004699 7.6e-45 183.7 105 78.1
BolC2t06916H Brassica oleracea HOM05D004069 ORTHO05D004699 7.6e-45 183.7 105 78.1
BolC3t13543H Brassica oleracea HOM05D004069 ORTHO05D004699 7.6e-45 183.7 105 78.1
BraA03t10237Z Brassica rapa HOM05D004069 ORTHO05D004699 7.6e-45 183.7 105 78.1
BraA10t44146Z Brassica rapa HOM05D004069 ORTHO05D004699 7.6e-45 183.7 105 78.1
Carub.0003s0574 Capsella rubella HOM05D004069 ORTHO05D004699 7.6e-45 183.7 105 77.1
MD16G1177400 Malus domestica HOM05D004069 ORTHO05D004699 7.6e-45 183.7 104 79.8
RcHm_v2.0_Chr4g0420511 Rosa chinensis HOM05D004069 ORTHO05D004699 7.6e-45 183.7 105 79.0
MD13G1175600 Malus domestica HOM05D004069 ORTHO05D004699 9.9e-45 183.3 104 78.8
PGR031G1560 Punica granatum HOM05D004069 ORTHO05D004699 9.9e-45 183.3 104 80.8
AL6G30150 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 1.3e-44 183.0 105 77.1
AT5G18800 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 1.3e-44 183.0 105 77.1
BcaC04g18646 Brassica carinata HOM05D004069 ORTHO05D004699 1.3e-44 183.0 105 77.1
BolC9t58640H Brassica oleracea HOM05D004069 ORTHO05D004699 1.3e-44 183.0 105 77.1
Carub.0006s1710 Capsella rubella HOM05D004069 ORTHO05D004699 1.3e-44 183.0 105 77.1
EL10Ac9g21174 Beta vulgaris HOM05D004069 ORTHO05D004699 2.2e-44 182.2 97 83.5
BcaB08g36643 Brassica carinata HOM05D004069 ORTHO05D004699 2.2e-44 182.2 105 77.1
Thhalv10015085m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 2.2e-44 182.2 105 77.1
Nn3g21235 Nelumbo nucifera HOM05D004069 ORTHO05D004699 2.2e-44 182.2 107 75.7
AL3G17240 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 2.9e-44 181.8 105 76.2
BcaB01g04889 Brassica carinata HOM05D004069 ORTHO05D004699 2.9e-44 181.8 103 78.6
C09p57690 Brassica napus HOM05D004069 ORTHO05D004699 2.9e-44 181.8 105 76.2
CARHR194200 Cardamine hirsuta HOM05D004069 ORTHO05D004699 3.8e-44 181.4 105 76.2
Cc03_g02560 Coffea canephora HOM05D004069 ORTHO05D004699 3.8e-44 181.4 103 78.6
Sp6g25590 Schrenkiella parvula HOM05D004069 ORTHO05D004699 3.8e-44 181.4 105 76.2
Sed0000717 Sechium edule HOM05D004069 ORTHO05D004699 3.8e-44 181.4 105 77.1
BraA02t05469Z Brassica rapa HOM05D004069 ORTHO05D004699 4.9e-44 181.0 105 76.2
Lalb_Chr13g0291661 Lupinus albus HOM05D004069 ORTHO05D004699 4.9e-44 181.0 105 76.2
CARHR080830 Cardamine hirsuta HOM05D004069 ORTHO05D004699 6.4e-44 180.6 108 73.1
Sc11g0003950 Simmondsia chinensis HOM05D004069 ORTHO05D004699 6.4e-44 180.6 104 76.9
Aa31LG11G10890 Aethionema arabicum HOM05D004069 ORTHO05D004699 8.4e-44 180.3 105 77.1
Hma1.2p1_1671F.1_g296710 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 8.4e-44 180.3 102 78.4
Actinidia40204 Actinidia chinensis HOM05D004069 ORTHO05D004699 1.1e-43 179.9 105 74.3
Eucgr.B01248 Eucalyptus grandis HOM05D004069 ORTHO05D004699 1.1e-43 179.9 108 75.9
Thhalv10021810m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 1.1e-43 179.9 104 76.0
FAN07G2596 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.1e-43 179.9 105 77.1
FAN22G1255 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.1e-43 179.9 105 77.1
Hma1.2p1_0078F.1_g040910 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 1.4e-43 179.5 102 78.4
AT3G06310 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 1.9e-43 179.1 105 74.3
Sp3g05220 Schrenkiella parvula HOM05D004069 ORTHO05D004699 1.9e-43 179.1 105 74.3
Ah.01g005950 Amaranthus hybridus HOM05D004069 ORTHO05D004699 2.4e-43 178.7 97 81.4
FvH4_4g16930 Fragaria vesca HOM05D004069 ORTHO05D004699 2.4e-43 178.7 105 76.2
FAN12G1790 Fragaria x ananassa HOM05D004069 ORTHO05D004699 2.4e-43 178.7 105 76.2
FAN12G4073 Fragaria x ananassa HOM05D004069 ORTHO05D004699 2.4e-43 178.7 105 76.2
FAN17G0096 Fragaria x ananassa HOM05D004069 ORTHO05D004699 2.4e-43 178.7 105 77.1
Nitab4.5_0009882g0010 Nicotiana tabacum HOM05D004069 ORTHO05D004699 2.4e-43 178.7 103 77.7
ATR0208G034 Amborella trichopoda HOM05D004069 ORTHO05D004699 3.2e-43 178.3 104 77.9
HanXRQChr13g0410171 Helianthus annuus HOM05D004069 ORTHO05D004699 4.2e-43 177.9 104 75.0
Nitab4.5_0001714g0140 Nicotiana tabacum HOM05D004069 ORTHO05D004699 4.2e-43 177.9 109 75.2
Actinidia32378 Actinidia chinensis HOM05D004069 ORTHO05D004699 5.4e-43 177.6 105 73.3
Eucgr.B01240 Eucalyptus grandis HOM05D004069 ORTHO05D004699 5.4e-43 177.6 108 75.0
PGR031G3162 Punica granatum HOM05D004069 ORTHO05D004699 5.4e-43 177.6 109 75.2
Sc19g0004820 Simmondsia chinensis HOM05D004069 ORTHO05D004699 7.1e-43 177.2 105 77.1
Gorai.006G256800 Gossypium raimondii HOM05D004069 ORTHO05D004699 9.3e-43 176.8 105 73.3
Gohir.A09G232800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 1.2e-42 176.4 105 72.4
Hund24899 Selenicereus undatus HOM05D004069 ORTHO05D004699 1.6e-42 176.0 97 79.4
A02p05100 Brassica napus HOM05D000415 ORTHO05D002707 2.1e-42 175.6 101 78.2
C02p10150 Brassica napus HOM05D000415 ORTHO05D002707 2.1e-42 175.6 101 78.2
Sed0022789 Sechium edule HOM05D004069 ORTHO05D004699 2.1e-42 175.6 104 76.0
Aqoxy2G03156 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 2.7e-42 175.3 101 77.2
Gohir.D09G233900 Gossypium hirsutum HOM05D004069 ORTHO05D004699 2.7e-42 175.3 105 72.4
DCAR_002434 Daucus carota HOM05D004069 ORTHO05D004699 3.5e-42 174.9 104 76.0
Actinidia00062 Actinidia chinensis HOM05D004069 ORTHO05D004699 4.6e-42 174.5 108 69.4
Duzib151G0641 Durio zibethinus HOM05D004069 ORTHO05D004699 4.6e-42 174.5 105 71.4
Gohir.D10G164800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 4.6e-42 174.5 105 70.5
Gorai.011G184000 Gossypium raimondii HOM05D004069 ORTHO05D004699 4.6e-42 174.5 105 70.5
AUR62022250 Chenopodium quinoa HOM05D004069 ORTHO05D004699 6.0e-42 174.1 97 79.4
Os03g0295500 Oryza sativa ssp. japonica HOM05D004069 ORTHO05D004699 1.0e-41 173.3 104 72.1
Solyc08g080240.3 Solanum lycopersicum HOM05D004069 ORTHO05D004699 1.0e-41 173.3 103 74.8
Sopen08g028590 Solanum pennellii HOM05D004069 ORTHO05D004699 1.0e-41 173.3 103 74.8
PGSC0003DMG400022739 Solanum tuberosum HOM05D004069 ORTHO05D004699 1.0e-41 173.3 103 73.8
THA.LOC104827125 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 1.0e-41 173.3 105 74.3
CAN.G981.42 Capsicum annuum HOM05D004069 ORTHO05D004699 1.3e-41 172.9 102 74.5
Peaxi162Scf00620g00918 Petunia axillaris HOM05D004069 ORTHO05D004699 1.3e-41 172.9 103 74.8
HPP92_001127 Vanilla planifolia HOM05D004069 ORTHO05D004699 1.3e-41 172.9 104 73.1
Zm00001eb396890 Zea mays HOM05D004069 ORTHO05D004699 1.3e-41 172.9 104 73.1
TAR362G0867 Trochodendron aralioides HOM05D004069 ORTHO05D004699 1.7e-41 172.6 104 75.0
Duzib052G0156 Durio zibethinus HOM05D004069 ORTHO05D004699 2.3e-41 172.2 105 69.5
Lsat_1_v5_gn_5_49720 Lactuca sativa HOM05D004069 ORTHO05D004699 2.3e-41 172.2 104 73.1
vmacro15276 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 2.3e-41 172.2 107 72.0
ECA240G0933 Erigeron canadensis HOM05D004069 ORTHO05D004699 3.0e-41 171.8 104 73.1
Thecc.04G274500 Theobroma cacao HOM05D004069 ORTHO05D004699 3.0e-41 171.8 105 71.4
Gohir.A10G103600 Gossypium hirsutum HOM05D004069 ORTHO05D004699 3.9e-41 171.4 105 69.5
HanXRQChr03g0079731 Helianthus annuus HOM05D004069 ORTHO05D004699 3.9e-41 171.4 104 73.1
Zm00001eb013640 Zea mays HOM05D004069 ORTHO05D004699 1.1e-40 169.9 110 70.9
Duzib212G0467 Durio zibethinus HOM05D004069 ORTHO05D004699 2.5e-40 168.7 104 69.2
Aqoxy5G00598 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 5.6e-40 167.5 105 72.4
PSO832G3814 Papaver somniferum HOM05D004069 ORTHO05D004699 5.6e-40 167.5 99 75.8
PSO210G4490 Papaver somniferum HOM05D004069 ORTHO05D004699 9.6e-40 166.8 99 74.7
Migut.F02022 Erythranthe guttata HOM05D004069 ORTHO05D004699 1.3e-39 166.4 98 72.4
Hma1.2p1_0643F.1_g194630 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 1.6e-39 166.0 109 72.5
Rhsim04G0214300 Rhododendron simsii HOM05D004069 ORTHO05D004699 2.8e-39 165.2 171 51.5
unitig_46.g18583 Utricularia gibba HOM05D004069 ORTHO05D004699 8.1e-39 163.7 98 72.4
TAR633G1540 Trochodendron aralioides HOM05D004069 ORTHO05D004699 1.1e-38 163.3 87 79.3
MSTRG.9205 Avicennia marina HOM05D004069 ORTHO05D004699 1.8e-38 162.5 98 70.4
CDE09G1375 Ceratophyllum demersum HOM05D004069 ORTHO05D004699 1.8e-38 162.5 100 70.0
Oeu007709.1 Olea europaea HOM05D004069 ORTHO05D004699 1.8e-38 162.5 105 67.6
Rhsim02G0014600 Rhododendron simsii HOM05D004069 ORTHO05D004699 9.0e-38 160.2 111 65.8
unitig_37.g12295 Utricularia gibba HOM05D004069 ORTHO05D004699 9.0e-38 160.2 97 70.1
HanXRQChr03g0080011 Helianthus annuus HOM05D004069 ORTHO05D004699 4.5e-37 157.9 87 75.9
SEGI_25177 Sequoiadendron giganteum HOM05D004069 ORTHO05D004699 5.8e-37 157.5 96 69.8
Haze_01035 Corylus avellana HOM05D004069 ORTHO05D004699 2.4e-35 152.1 86 80.2
Pp3c10_17050 Physcomitrium patens HOM05D004069 ORTHO05D004699 6.7e-33 144.1 104 62.5
CBR_g31386 Chara braunii HOM05D004069 ORTHO05D004699 2.1e-31 139.0 101 62.4
Pp3c4_6220 Physcomitrium patens HOM05D004069 ORTHO05D004699 2.1e-31 139.0 102 60.8
Pp3c3_33480 Physcomitrium patens HOM05D004069 ORTHO05D004699 6.2e-31 137.5 102 60.8
Mapoly0119s0025 Marchantia polymorpha HOM05D004069 ORTHO05D004699 1.4e-30 136.3 95 61.1
Lsat_1_v5_gn_5_51221 Lactuca sativa HOM05D004069 ORTHO05D004699 2.4e-30 135.6 76 72.4
THA.LOC104802732 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 9.0e-30 133.7 79 73.4
Dinv38340 Davidia involucrata HOM05D004069 ORTHO05D004699 2.6e-29 132.1 101 60.4
Dinv44442 Davidia involucrata HOM05D004069 ORTHO05D004699 2.6e-29 132.1 71 76.1
CDE02G1037 Ceratophyllum demersum HOM05D003181 ORTHO05D003689 1.1e-27 126.7 77 71.4
SMO146G0136 Selaginella moellendorffii HOM05D004069 ORTHO05D004699 6.0e-26 120.9 98 50.0
CSS0016731 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 4.0e-22 108.2 72 68.1
Ca_23836_v3 Cicer arietinum L. HOM05D004069 ORTHO05D004699 9.0e-22 107.1 62 80.6
PGSC0003DMG400012496 Solanum tuberosum HOM05D004069 ORTHO05D004699 2.2e-20 102.4 69 66.7
ClCG03G006350 Citrullus lanatus HOM05D004069 ORTHO05D004699 2.5e-19 99.0 66 66.7
MELO3C035505.2 Cucumis melo HOM05D004069 ORTHO05D004699 4.2e-19 98.2 62 69.4
CANSAT54G1967 Cannabis sativa HOM05D004069 ORTHO05D004699 5.5e-19 97.8 58 75.9
MCO10G196 Micromonas commoda HOM05D004069 ORTHO05D004699 3.5e-18 95.1 92 43.5
AUR62031965 Chenopodium quinoa HOM05D004069 ORTHO05D004699 6.0e-18 94.4 54 81.5
Oeu055049.1 Olea europaea HOM05D005940 ORTHO05D007027 6.7e-17 90.9 68 63.2
SGA_v2.0_scaffold122G33247 Striga asiatica HOM05D002362 ORTHO05D002465 1.5e-16 89.7 58 72.4
PRCOL_00002240 Prasinoderma coloniale HOM05D004069 ORTHO05D004699 1.9e-16 89.4 92 41.3
Ah.01g017190 Amaranthus hybridus HOM05D004069 ORTHO05D004699 2.5e-16 89.0 48 83.3
HanXRQChr05g0152631 Helianthus annuus HOM05D001685 ORTHO05D007488 2.5e-16 89.0 59 69.5
VMungo0251G3681 Vigna mungo HOM05D039118 ORTHO05D004699 2.2e-15 85.9 45 80.0
Solyc08g007805.1 Solanum lycopersicum HOM05D004069 ORTHO05D004699 2.8e-15 85.5 54 66.7
Ah.01g017180 Amaranthus hybridus HOM05D004069 ORTHO05D004699 3.7e-15 85.1 54 64.8
Lsat_1_v5_gn_5_162901 Lactuca sativa HOM05D004069 ORTHO05D004699 6.3e-15 84.3 62 62.9
VMungo0720G1128 Vigna mungo HOM05D004069 ORTHO05D004699 8.2e-15 84.0 64 62.5
MBI18_g15803_MAGBIO Magnolia biondii HOM05D004069 ORTHO05D004699 1.1e-14 83.6 41 82.9
Cfa025682 Carpinus fangiana HOM05D004069 ORTHO05D122540 2.2e-07 59.3 86 34.9


User provided reference genes

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