Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p006240 Quercus lobata HOM05D006695 ORTHO05D008239 1.8e-122 442.6 218 100.0
CiPaw.01G156500 Carya illinoinensis HOM05D006695 ORTHO05D008239 9.8e-113 410.2 218 91.3
Cfa015538 Carpinus fangiana HOM05D006695 ORTHO05D008239 2.0e-110 402.5 222 88.3
Haze_01012 Corylus avellana HOM05D006695 ORTHO05D008239 1.7e-109 399.4 222 88.3
Actinidia23450 Actinidia chinensis HOM05D006695 ORTHO05D008239 4.4e-105 384.8 214 86.4
GSVIVG01017849001 Vitis vinifera HOM05D006695 ORTHO05D008239 5.7e-105 384.4 217 86.6
Hma1.2p1_0643F.1_g194500 Hydrangea macrophylla HOM05D006695 ORTHO05D008239 9.8e-105 383.6 213 87.8
RcHm_v2.0_Chr4g0420161 Rosa chinensis HOM05D006695 ORTHO05D008239 4.9e-104 381.3 217 85.3
TAR362G0795 Trochodendron aralioides HOM05D006695 ORTHO05D008239 6.4e-104 380.9 216 84.7
CsaV3_3G013940 Cucumis sativus L. HOM05D006695 ORTHO05D008239 1.1e-103 380.2 217 84.3
MD13G1177300 Malus domestica HOM05D006695 ORTHO05D008239 1.4e-103 379.8 217 84.3
CSS0029139 Camellia sinensis var. sinensis HOM05D002837 ORTHO05D008239 1.8e-103 379.4 214 87.4
CANSAT78G2164 Cannabis sativa HOM05D006695 ORTHO05D008239 2.4e-103 379.0 217 85.3
DCAR_022857 Daucus carota HOM05D006695 ORTHO05D008239 3.2e-103 378.6 214 85.5
Cpa.g.sc16.75 Carica papaya HOM05D006695 ORTHO05D008239 5.4e-103 377.9 218 84.4
Prupe.1G146500 Prunus persica HOM05D006695 ORTHO05D008239 5.4e-103 377.9 217 84.3
Lj3A806T51 Lonicera japonica HOM05D006695 ORTHO05D008239 1.2e-102 376.7 214 86.4
FvH4_4g16710 Fragaria vesca HOM05D006695 ORTHO05D008239 3.5e-102 375.2 217 83.9
FAN07G1129 Fragaria x ananassa HOM05D006695 ORTHO05D008239 4.6e-102 374.8 217 83.9
FAN22G2065 Fragaria x ananassa HOM05D006695 ORTHO05D008239 1.3e-101 373.2 212 84.4
Sed0007686 Sechium edule HOM05D006695 ORTHO05D008239 1.3e-101 373.2 215 83.3
FAN17G3101 Fragaria x ananassa HOM05D006695 ORTHO05D008239 1.7e-101 372.9 217 82.9
Atru.chr4.2706 Acer truncatum HOM05D006695 ORTHO05D008239 2.3e-101 372.5 216 85.2
Cc03_g02720 Coffea canephora HOM05D006695 ORTHO05D008239 2.3e-101 372.5 212 83.5
TWI09G1388 Tripterygium wilfordii HOM05D006695 ORTHO05D008239 3.9e-101 371.7 218 81.7
MELO3C006586.2 Cucumis melo HOM05D006695 ORTHO05D008239 6.6e-101 370.9 232 78.4
Psat4g028960 Pisum sativum HOM05D006695 ORTHO05D008239 8.6e-101 370.5 218 81.2
Ciclev10006973m.g Citrus clementina HOM05D006695 ORTHO05D008239 1.5e-100 369.8 216 84.7
Oeu044811.1 Olea europaea HOM05D006695 ORTHO05D008239 3.3e-100 368.6 212 84.0
Peaxi162Scf00095g00413 Petunia axillaris HOM05D006695 ORTHO05D008239 1.2e-99 366.7 213 80.3
TPR.G28124 Trifolium pratense HOM05D006695 ORTHO05D008239 1.2e-99 366.7 217 80.6
Gorai.011G181900 Gossypium raimondii HOM05D006695 ORTHO05D008239 2.8e-99 365.5 218 81.2
Duzib151G0948 Durio zibethinus HOM05D006695 ORTHO05D008239 4.7e-99 364.8 218 81.7
Gohir.A10G105600 Gossypium hirsutum HOM05D006695 ORTHO05D008239 4.7e-99 364.8 218 80.7
Manes.03G188400 Manihot esculenta HOM05D006695 ORTHO05D008239 4.7e-99 364.8 217 82.0
Medtr4g118420 Medicago truncatula HOM05D006695 ORTHO05D008239 4.7e-99 364.8 217 80.2
Thecc.04G272900 Theobroma cacao HOM05D006695 ORTHO05D008239 6.2e-99 364.4 218 79.8
Eucgr.H03643 Eucalyptus grandis HOM05D006695 ORTHO05D008239 1.4e-98 363.2 218 81.2
Gohir.D10G163000 Gossypium hirsutum HOM05D006695 ORTHO05D008239 1.4e-98 363.2 218 80.7
PGR004G1570 Punica granatum HOM05D006695 ORTHO05D008239 1.4e-98 363.2 218 81.7
Sopen01g032270 Solanum pennellii HOM05D006695 ORTHO05D008239 2.3e-98 362.5 215 78.6
PGSC0003DMG400032106 Solanum tuberosum HOM05D006695 ORTHO05D008239 2.3e-98 362.5 215 78.6
Aqoxy5G00568 Aquilegia oxysepala HOM05D006695 ORTHO05D008239 3.1e-98 362.1 215 80.5
MSTRG.24766 Avicennia marina HOM05D006695 ORTHO05D008239 3.1e-98 362.1 212 80.7
VMungo1215G2645 Vigna mungo HOM05D006695 ORTHO05D008239 1.2e-97 360.1 217 81.1
ECA233G4227 Erigeron canadensis HOM05D006695 ORTHO05D008239 1.5e-97 359.8 216 81.5
THA.LOC104821758 Tarenaya hassleriana HOM05D006695 ORTHO05D008239 1.5e-97 359.8 216 81.0
Sc25g0004560 Simmondsia chinensis HOM05D006695 ORTHO05D008239 2.0e-97 359.4 218 80.7
Solyc01g080470.3 Solanum lycopersicum HOM05D006695 ORTHO05D008239 2.6e-97 359.0 215 78.1
Glyma.17G020700 Glycine max HOM05D006695 ORTHO05D008239 3.4e-97 358.6 217 81.6
Potri.008G198200 Populus trichocarpa HOM05D006695 ORTHO05D008239 3.4e-97 358.6 215 80.9
PSO832G0924 Papaver somniferum HOM05D006695 ORTHO05D008239 4.4e-97 358.2 216 78.2
Phvul.003G098300 Phaseolus vulgaris HOM05D006695 ORTHO05D008239 7.5e-97 357.5 217 80.2
CAN.G889.4 Capsicum annuum HOM05D006695 ORTHO05D008239 9.8e-97 357.1 215 77.7
Lalb_Chr12g0196371 Lupinus albus HOM05D006695 ORTHO05D008239 9.8e-97 357.1 218 80.3
PSO210G1829 Papaver somniferum HOM05D006695 ORTHO05D008239 2.9e-96 355.5 216 77.8
Nitab4.5_0000059g0220 Nicotiana tabacum HOM05D006695 ORTHO05D008239 6.4e-96 354.4 216 79.2
Aa31LG9G1920 Aethionema arabicum HOM05D006695 ORTHO05D008239 1.4e-95 353.2 209 80.4
ClCG05G005600 Citrullus lanatus HOM05D006695 ORTHO05D008239 4.1e-95 351.7 202 83.2
Thhalv10026193m.g Eutrema salsugineum HOM05D006695 ORTHO05D008239 4.1e-95 351.7 216 78.2
Sp7g13770 Schrenkiella parvula HOM05D006695 ORTHO05D008239 1.6e-94 349.7 213 78.4
A03p49160 Brassica napus HOM05D006695 ORTHO05D008239 2.0e-94 349.4 213 79.8
Carub.0007s2636 Capsella rubella HOM05D006695 ORTHO05D008239 2.0e-94 349.4 215 79.1
AT4G15520 Arabidopsis thaliana HOM05D006695 ORTHO05D008239 6.0e-94 347.8 215 79.1
Lsat_1_v5_gn_6_64520 Lactuca sativa HOM05D006695 ORTHO05D008239 6.0e-94 347.8 211 80.1
AL7G40000 Arabidopsis lyrata HOM05D006695 ORTHO05D008239 7.8e-94 347.4 215 79.5
CARHR222310 Cardamine hirsuta HOM05D006695 ORTHO05D008239 1.0e-93 347.1 213 79.3
SGA_v2.0_scaffold89G27581 Striga asiatica HOM05D006695 ORTHO05D008239 1.0e-93 347.1 212 76.9
HanXRQChr08g0235981 Helianthus annuus HOM05D006695 ORTHO05D008239 1.7e-93 346.3 216 76.4
Sabra08G0162200 Salix brachista HOM05D006695 ORTHO05D008239 1.7e-93 346.3 218 78.4
BcaNung00267 Brassica carinata HOM05D006695 ORTHO05D008239 3.9e-93 345.1 213 77.9
Migut.N00136 Erythranthe guttata HOM05D006695 ORTHO05D008239 3.9e-93 345.1 212 77.4
SalBow5G4654 Salvia bowleyana HOM05D006695 ORTHO05D008239 3.9e-93 345.1 212 79.7
SalBow5G4989 Salvia bowleyana HOM05D006695 ORTHO05D008239 3.9e-93 345.1 212 79.7
BraA03t14010Z Brassica rapa HOM05D006695 ORTHO05D008239 8.6e-93 344.0 217 78.3
C01p27440 Brassica napus HOM05D006695 ORTHO05D008239 2.5e-92 342.4 216 76.9
Lj4g0002890 Lotus japonicus HOM05D006695 ORTHO05D008239 3.3e-92 342.0 219 77.2
A01p22050 Brassica napus HOM05D006695 ORTHO05D008239 4.3e-92 341.7 213 77.5
BraA01t02111Z Brassica rapa HOM05D006695 ORTHO05D008239 4.3e-92 341.7 213 77.5
BolC1t02683H Brassica oleracea HOM05D006695 ORTHO05D008239 7.3e-92 340.9 213 77.0
EL10Ac3g06533 Beta vulgaris HOM05D006695 ORTHO05D008239 9.5e-92 340.5 213 76.1
BcaC06g32939 Brassica carinata HOM05D006695 ORTHO05D008239 1.2e-91 340.1 218 75.7
BcaC09g50242 Brassica carinata HOM05D006695 ORTHO05D008239 1.6e-91 339.7 213 77.0
BcaC09g50247 Brassica carinata HOM05D006695 ORTHO05D008239 1.6e-91 339.7 213 77.0
AUR62040724 Chenopodium quinoa HOM05D006695 ORTHO05D008239 3.1e-90 335.5 210 76.2
Sed0005422 Sechium edule HOM05D006695 ORTHO05D008239 4.9e-88 328.2 201 79.6
CDE02G2295 Ceratophyllum demersum HOM05D006695 ORTHO05D008239 1.4e-87 326.6 204 76.5
unitig_8.g3083 Utricularia gibba HOM05D006695 ORTHO05D008239 2.1e-86 322.8 213 75.1
SEGI_18217 Sequoiadendron giganteum HOM05D006695 ORTHO05D008239 6.6e-85 317.8 204 72.5
HPP92_016066 Vanilla planifolia HOM05D006695 ORTHO05D008239 2.5e-84 315.8 212 69.8
Nitab4.5_0006860g0010 Nicotiana tabacum HOM05D006695 ORTHO05D008239 3.3e-84 315.5 213 73.2
BcaC06g33413 Brassica carinata HOM05D006695 ORTHO05D008239 1.2e-83 313.5 217 73.3
ATR0580G301 Amborella trichopoda HOM05D006695 ORTHO05D008239 8.9e-82 307.4 205 72.2
Os05g0141400 Oryza sativa ssp. japonica HOM05D006695 ORTHO05D008239 3.8e-80 302.0 217 68.2
SHI00328 Sapria himalayana HOM05D006695 ORTHO05D008239 2.4e-79 299.3 217 69.1
C07p47200 Brassica napus HOM05D006695 ORTHO05D008239 3.2e-79 298.9 193 76.2
Zm00001eb108650 Zea mays HOM05D006695 ORTHO05D008239 3.2e-79 298.9 218 68.8
AagrBONN_evm.TU.Sc2ySwM_228.600 Anthoceros agrestis HOM05D006695 ORTHO05D008239 3.0e-77 292.4 186 71.0
CDE08G0351 Ceratophyllum demersum HOM05D006695 ORTHO05D008239 7.3e-76 287.7 219 66.2
BolC7t45242H Brassica oleracea HOM05D006695 ORTHO05D008239 1.2e-75 287.0 188 75.5
Mapoly0001s0064 Marchantia polymorpha HOM05D006695 ORTHO05D008239 2.6e-73 279.3 192 68.2
SMO347G0043 Selaginella moellendorffii HOM05D006695 ORTHO05D008239 7.6e-73 277.7 199 66.8
Dinv38348 Davidia involucrata HOM05D006695 ORTHO05D008239 2.9e-72 275.8 149 86.6
FAN12G3773 Fragaria x ananassa HOM05D006695 ORTHO05D008239 2.4e-71 272.7 263 58.2
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 2.3e-69 266.2 144 88.2
Pp3c22_4480 Physcomitrium patens HOM05D006695 ORTHO05D008239 4.3e-68 261.9 191 66.0
Hma1.2p1_0643F.1_g194510 Hydrangea macrophylla HOM05D006695 ORTHO05D008239 1.3e-67 260.4 148 83.8
vmacro08234 Vaccinium macrocarpon HOM05D006695 ORTHO05D008239 8.1e-67 257.7 149 82.6
MD16G1178900 Malus domestica HOM05D006695 ORTHO05D008239 1.7e-64 250.0 147 81.6
Cre05.g238950 Chlamydomonas reinhardtii HOM05D006695 ORTHO05D008239 4.9e-56 221.9 176 58.5
MCO16G273 Micromonas commoda HOM05D006695 ORTHO05D008239 3.1e-50 202.6 191 51.3
FAN12G1880 Fragaria x ananassa HOM05D006695 ORTHO05D008239 1.2e-46 190.7 103 89.3
PRCOL_00001113 Prasinoderma coloniale HOM05D006695 ORTHO05D008239 5.7e-36 155.2 209 44.5
SEGI_22589 Sequoiadendron giganteum HOM05D006695 ORTHO05D008239 1.4e-29 134.0 94 66.0
Glyma.06G247300 Glycine max HOM05D006695 ORTHO05D008239 8.2e-27 124.8 85 70.6
arahy.Tifrunner.gnm1.ann1.5C91KI Arachis hypogaea HOM05D006695 ORTHO05D008239 3.1e-26 122.9 71 83.1
CBR_g29509 Chara braunii HOM05D006695 ORTHO05D008239 5.0e-24 115.5 98 57.1
CBR_g29507 Chara braunii HOM05D006695 ORTHO05D008239 5.5e-23 112.1 87 62.1
ATR0235G001 Amborella trichopoda HOM05D006695 ORTHO05D008239 1.2e-22 110.9 67 76.1
MD13G1177100 Malus domestica HOM05D006695 ORTHO05D008239 5.2e-21 105.5 67 74.6
Oeu037660.1 Olea europaea HOM05D006695 ORTHO05D008239 7.2e-15 85.1 143 39.9
arahy.Tifrunner.gnm1.ann1.A7EL5Y Arachis hypogaea HOM05D003181 ORTHO05D003689 1.3e-08 64.3 41 68.3
C09p61730 Brassica napus HOM05D006539 ORTHO05D008694 2.9e-08 63.2 142 28.2
BcaC04g24242 Brassica carinata HOM05D006539 ORTHO05D008694 3.8e-08 62.8 142 27.5
A10p23500 Brassica napus HOM05D006539 ORTHO05D008694 3.8e-08 62.8 142 27.5
BolC9t59012H Brassica oleracea HOM05D006539 ORTHO05D008694 8.5e-08 61.6 142 27.5
ECA232G1677 Erigeron canadensis HOM05D006539 ORTHO05D008694 1.5e-07 60.8 142 27.5
AT5G15390 Arabidopsis thaliana HOM05D006539 ORTHO05D008694 4.2e-07 59.3 183 26.8
Thhalv10013964m.g Eutrema salsugineum HOM05D006539 ORTHO05D008694 4.2e-07 59.3 183 26.8
Lsat_1_v5_gn_4_170180 Lactuca sativa HOM05D006539 ORTHO05D008694 7.2e-07 58.5 177 25.4
Sp6g28700 Schrenkiella parvula HOM05D006539 ORTHO05D008694 7.2e-07 58.5 205 26.3
TAR371G0397 Trochodendron aralioides HOM05D006539 ORTHO05D008694 9.4e-07 58.2 142 28.2
TAR371G0750 Trochodendron aralioides HOM05D006539 ORTHO05D008694 9.4e-07 58.2 142 28.2
Carub.0006s1356 Capsella rubella HOM05D006539 ORTHO05D008694 1.2e-06 57.8 142 27.5
Cpa.g.sc14.138 Carica papaya HOM05D006539 ORTHO05D008694 1.2e-06 57.8 142 28.9
THA.LOC104822345 Tarenaya hassleriana HOM05D006539 ORTHO05D008694 1.2e-06 57.8 142 28.9
BraA10t44417Z Brassica rapa HOM05D006539 ORTHO05D008694 2.1e-06 57.0 151 27.2
CARHR197920 Cardamine hirsuta HOM05D006539 ORTHO05D008694 2.1e-06 57.0 142 28.2
HanXRQChr09g0264131 Helianthus annuus HOM05D006539 ORTHO05D008694 2.7e-06 56.6 142 26.1
MELO3C013239.2 Cucumis melo HOM05D000031 ORTHO05D000030 3.6e-06 56.2 32 75.0


User provided reference genes

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