Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p005538 Quercus lobata HOM05D003606 ORTHO05D004650 2.3e-162 575.9 367 100.0
Ciclev10015115m.g Citrus clementina HOM05D003606 ORTHO05D004650 1.0e-138 497.3 360 77.5
Cfa010803 Carpinus fangiana HOM05D003606 ORTHO05D004650 5.1e-138 495.0 366 89.1
CiPaw.05G162700 Carya illinoinensis HOM05D003606 ORTHO05D004650 1.1e-137 493.8 363 88.7
Cpa.g.sc19.249 Carica papaya HOM05D003606 ORTHO05D004650 2.5e-137 492.7 359 80.8
Haze_03155 Corylus avellana HOM05D003606 ORTHO05D004650 2.5e-137 492.7 366 88.8
Sabra09G0042600 Salix brachista HOM05D003606 ORTHO05D004650 5.3e-135 485.0 356 86.5
Actinidia02534 Actinidia chinensis HOM05D000009 ORTHO05D004650 2.6e-134 482.6 366 83.1
Nn5g28763 Nelumbo nucifera HOM05D003606 ORTHO05D004650 4.5e-134 481.9 363 81.0
MELO3C023992.2 Cucumis melo HOM05D003606 ORTHO05D004650 5.8e-134 481.5 359 88.6
CsaV3_3G031990 Cucumis sativus L. HOM05D003606 ORTHO05D004650 5.8e-134 481.5 359 88.6
Atru.chr11.2590 Acer truncatum HOM05D003606 ORTHO05D004650 3.8e-133 478.8 360 88.1
Cc02_g29020 Coffea canephora HOM05D003606 ORTHO05D004650 1.1e-132 477.2 360 86.1
TWI32G0899 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 1.4e-132 476.9 363 85.4
HanXRQChr17g0563081 Helianthus annuus HOM05D003606 ORTHO05D004650 7.1e-132 474.6 366 81.4
Potri.009G058000 Populus trichocarpa HOM05D003606 ORTHO05D004650 7.1e-132 474.6 356 88.2
Nitab4.5_0001284g0090 Nicotiana tabacum HOM05D003606 ORTHO05D004650 4.6e-131 471.9 362 77.6
RcHm_v2.0_Chr1g0317321 Rosa chinensis HOM05D003606 ORTHO05D004650 1.0e-130 470.7 359 79.4
SalBow4G1900 Salvia bowleyana HOM05D003606 ORTHO05D004650 1.3e-130 470.3 367 72.5
Phvul.004G092500 Phaseolus vulgaris HOM05D003606 ORTHO05D004650 1.8e-130 469.9 359 86.4
COL.COLO4_04879 Corchorus olitorius HOM05D003606 ORTHO05D004650 3.0e-130 469.2 359 86.6
Ca_19553_v3 Cicer arietinum L. HOM05D003606 ORTHO05D004650 5.1e-130 468.4 359 77.2
CiPaw.05G024300 Carya illinoinensis HOM05D003606 ORTHO05D004650 6.7e-130 468.0 361 87.0
Gohir.A08G142700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 6.7e-130 468.0 359 87.2
Gohir.D08G163700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 8.7e-130 467.6 359 87.2
Dinv09318 Davidia involucrata HOM05D003606 ORTHO05D004650 1.5e-129 466.8 363 84.6
Medtr1g054300 Medicago truncatula HOM05D003606 ORTHO05D004650 1.5e-129 466.8 360 77.2
Gorai.004G170600 Gossypium raimondii HOM05D003606 ORTHO05D004650 1.9e-129 466.5 359 86.9
Duzib138G0203 Durio zibethinus HOM05D003606 ORTHO05D004650 2.5e-129 466.1 359 86.4
TWI34G0860 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 2.5e-129 466.1 363 85.4
Lj5g0022697 Lotus japonicus HOM05D003606 ORTHO05D004650 4.3e-129 465.3 359 85.5
Lalb_Chr21g0315701 Lupinus albus HOM05D003606 ORTHO05D004650 4.3e-129 465.3 359 85.5
Eucgr.G03357 Eucalyptus grandis HOM05D003606 ORTHO05D004650 9.6e-129 464.2 363 84.6
Solyc03g112530.3 Solanum lycopersicum HOM05D003606 ORTHO05D004650 1.6e-128 463.4 358 80.7
Sopen03g031590 Solanum pennellii HOM05D003606 ORTHO05D004650 1.6e-128 463.4 358 80.7
SGA_v2.0_scaffold1G00601 Striga asiatica HOM05D003606 ORTHO05D004650 1.6e-128 463.4 365 83.0
Thecc.01G407200 Theobroma cacao HOM05D003606 ORTHO05D004650 1.6e-128 463.4 359 86.1
Glyma.02G080600 Glycine max HOM05D003606 ORTHO05D004650 2.1e-128 463.0 359 85.8
PGSC0003DMG400018107 Solanum tuberosum HOM05D003606 ORTHO05D004650 2.8e-128 462.6 358 80.7
THA.LOC104819092 Tarenaya hassleriana HOM05D003606 ORTHO05D004650 3.7e-128 462.2 359 74.4
VMungo0464G1676 Vigna mungo HOM05D003606 ORTHO05D004650 4.8e-128 461.8 359 85.2
MSTRG.2635 Avicennia marina HOM05D003606 ORTHO05D004650 6.2e-128 461.5 358 83.5
Glyma.16G165100 Glycine max HOM05D003606 ORTHO05D004650 6.2e-128 461.5 359 84.4
Sc23g0005910 Simmondsia chinensis HOM05D003606 ORTHO05D004650 1.1e-127 460.7 358 84.4
TPR.G14490 Trifolium pratense HOM05D003606 ORTHO05D004650 1.4e-127 460.3 359 76.6
PSO675G6796 Papaver somniferum HOM05D003606 ORTHO05D004650 2.4e-127 459.5 365 78.4
PSO541G2647 Papaver somniferum HOM05D003606 ORTHO05D004650 4.0e-127 458.8 365 78.1
GSVIVG01032166001 Vitis vinifera HOM05D003606 ORTHO05D004650 9.0e-127 457.6 363 83.7
Manes.10G139000 Manihot esculenta HOM05D003606 ORTHO05D004650 2.6e-126 456.1 356 85.1
Sed0024972 Sechium edule HOM05D003606 ORTHO05D004650 2.6e-126 456.1 359 85.5
Dinv43413 Davidia involucrata HOM05D003606 ORTHO05D004650 4.5e-126 455.3 363 83.7
AUR62029807 Chenopodium quinoa HOM05D003606 ORTHO05D004650 5.8e-126 454.9 384 70.3
HanXRQChr16g0524861 Helianthus annuus HOM05D003606 ORTHO05D004650 5.8e-126 454.9 366 82.5
CAN.G338.7 Capsicum annuum HOM05D003606 ORTHO05D004650 7.6e-126 454.5 364 81.6
Psat6g110240 Pisum sativum HOM05D003606 ORTHO05D004650 7.6e-126 454.5 368 74.7
ECA234G3512 Erigeron canadensis HOM05D003606 ORTHO05D004650 9.9e-126 454.1 366 79.5
Migut.D00412 Erythranthe guttata HOM05D003606 ORTHO05D004650 1.3e-125 453.8 361 83.7
Lj3A990T71 Lonicera japonica HOM05D003606 ORTHO05D004650 2.2e-125 453.0 366 82.2
CDE02G3858 Ceratophyllum demersum HOM05D003606 ORTHO05D004650 2.9e-125 452.6 359 82.5
AUR62023088 Chenopodium quinoa HOM05D003606 ORTHO05D004650 2.9e-125 452.6 384 70.1
MD02G1305600 Malus domestica HOM05D003606 ORTHO05D004650 3.8e-125 452.2 366 78.1
Prupe.2G020500 Prunus persica HOM05D003606 ORTHO05D004650 7.1e-124 448.0 359 83.3
Rhsim07G0058400 Rhododendron simsii HOM05D003606 ORTHO05D004650 7.1e-124 448.0 367 83.4
FvH4_7g01500 Fragaria vesca HOM05D003606 ORTHO05D004650 6.0e-123 444.9 357 77.3
PGR031G1688 Punica granatum HOM05D003606 ORTHO05D004650 6.0e-123 444.9 363 79.3
FAN01G0800 Fragaria x ananassa HOM05D003606 ORTHO05D004650 1.3e-122 443.7 360 76.7
FAN03G2659 Fragaria x ananassa HOM05D003606 ORTHO05D004650 1.3e-122 443.7 360 76.7
FAN10G3084 Fragaria x ananassa HOM05D003606 ORTHO05D004650 1.3e-122 443.7 360 76.7
FAN06G2132 Fragaria x ananassa HOM05D003606 ORTHO05D004650 1.8e-122 443.4 357 72.3
vmacro13693 Vaccinium macrocarpon HOM05D003606 ORTHO05D004650 3.9e-122 442.2 365 82.5
ATR0626G036 Amborella trichopoda HOM05D003606 ORTHO05D004650 9.6e-121 437.6 357 69.2
ClCG10G012220 Citrullus lanatus HOM05D003606 ORTHO05D004650 4.8e-120 435.3 374 78.9
DCAR_003761 Daucus carota HOM05D003606 ORTHO05D004650 8.2e-120 434.5 363 81.8
Aqoxy2G00153 Aquilegia oxysepala HOM05D003606 ORTHO05D004650 1.2e-118 430.6 354 81.4
Lsat_1_v5_gn_4_31941 Lactuca sativa HOM05D003606 ORTHO05D004650 2.6e-118 429.5 366 80.3
MD17G1287700 Malus domestica HOM05D003606 ORTHO05D004650 3.4e-118 429.1 360 82.2
SGA_v2.0_scaffold138G35254 Striga asiatica HOM05D003606 ORTHO05D004650 4.5e-118 428.7 364 77.5
Ah.10g038660 Amaranthus hybridus HOM05D003606 ORTHO05D004650 1.0e-114 417.5 370 67.3
BcaB05g21983 Brassica carinata HOM05D003606 ORTHO05D004650 1.5e-113 413.7 358 76.5
CARHR265750 Cardamine hirsuta HOM05D003606 ORTHO05D004650 2.5e-113 412.9 360 72.2
Thhalv10013442m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 3.3e-113 412.5 353 77.3
BcaC03g14497 Brassica carinata HOM05D003606 ORTHO05D004650 4.3e-113 412.1 354 76.8
C02p19350 Brassica napus HOM05D003606 ORTHO05D004650 4.3e-113 412.1 354 76.8
BolC2t08070H Brassica oleracea HOM05D003606 ORTHO05D004650 4.3e-113 412.1 354 76.8
Sp6g14980 Schrenkiella parvula HOM05D003606 ORTHO05D004650 7.4e-113 411.4 350 78.3
Peaxi162Scf00089g01530 Petunia axillaris HOM05D003606 ORTHO05D004650 2.8e-112 409.5 366 78.4
TAR633G2243 Trochodendron aralioides HOM05D003606 ORTHO05D004650 3.7e-112 409.1 482 61.0
Nitab4.5_0012005g0010 Nicotiana tabacum HOM05D003606 ORTHO05D004650 1.8e-111 406.8 363 70.0
arahy.Tifrunner.gnm1.ann1.V59V4E Arachis hypogaea HOM05D003606 ORTHO05D004650 2.4e-111 406.4 367 78.5
arahy.Tifrunner.gnm1.ann1.F9F3MK Arachis hypogaea HOM05D003606 ORTHO05D004650 9.0e-111 404.4 367 78.7
A02p11600 Brassica napus HOM05D003606 ORTHO05D004650 9.0e-111 404.4 354 76.0
BraA02t06222Z Brassica rapa HOM05D003606 ORTHO05D004650 9.0e-111 404.4 354 76.0
AT5G52820 Arabidopsis thaliana HOM05D003606 ORTHO05D004650 2.0e-110 403.3 351 76.9
arahy.Tifrunner.gnm1.ann1.GAUK41 Arachis hypogaea HOM05D003606 ORTHO05D004650 2.6e-110 402.9 367 78.2
Os11g0594200 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 3.4e-110 402.5 368 75.3
SGA_v2.0_scaffold90G27689 Striga asiatica HOM05D003606 ORTHO05D004650 3.4e-110 402.5 313 87.5
Carub.0008s1298 Capsella rubella HOM05D003606 ORTHO05D004650 1.0e-109 401.0 351 76.9
AL8G27260 Arabidopsis lyrata HOM05D003606 ORTHO05D004650 1.7e-109 400.2 351 76.4
Aa31LG3G9060 Aethionema arabicum HOM05D003606 ORTHO05D004650 5.0e-109 398.7 351 76.4
SHI00285 Sapria himalayana HOM05D003606 ORTHO05D004650 2.5e-108 396.4 388 64.4
Manes.07G008500 Manihot esculenta HOM05D003606 ORTHO05D004650 4.2e-108 395.6 356 79.2
Hund21610 Selenicereus undatus HOM05D003606 ORTHO05D004650 1.2e-107 394.0 390 65.6
Zm00001eb297740 Zea mays HOM05D003606 ORTHO05D004650 6.1e-107 391.7 350 76.6
Oeu025828.1 Olea europaea HOM05D003606 ORTHO05D004650 2.3e-106 389.8 483 59.8
BcaB08g35635 Brassica carinata HOM05D003606 ORTHO05D004650 6.7e-106 388.3 356 61.0
Os10g0104500 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 8.2e-104 381.3 368 72.6
arahy.Tifrunner.gnm1.ann1.ZXEF1Z Arachis hypogaea HOM05D003606 ORTHO05D004650 1.4e-103 380.6 367 64.6
Thhalv10025051m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 9.1e-103 377.9 350 63.4
CANSAT01G2566 Cannabis sativa HOM05D003606 ORTHO05D004650 1.2e-102 377.5 366 72.4
SEGI_00890 Sequoiadendron giganteum HOM05D003606 ORTHO05D004650 2.6e-102 376.3 365 66.8
PSO541G4704 Papaver somniferum HOM05D003606 ORTHO05D004650 6.5e-101 371.7 358 62.0
BolC7t45366H Brassica oleracea HOM05D003606 ORTHO05D004650 9.4e-100 367.9 360 61.7
BcaNung04664 Brassica carinata HOM05D003606 ORTHO05D004650 1.7e-96 357.1 360 61.7
BcaC06g33533 Brassica carinata HOM05D003606 ORTHO05D004650 2.4e-95 353.2 382 58.1
C07p48580 Brassica napus HOM05D003606 ORTHO05D004650 5.3e-95 352.1 394 56.6
BcaNung04849 Brassica carinata HOM05D003606 ORTHO05D004650 1.5e-94 350.5 365 60.0
BolC9t59770H Brassica oleracea HOM05D003606 ORTHO05D004650 1.5e-94 350.5 365 60.0
C09p70260 Brassica napus HOM05D003606 ORTHO05D004650 1.0e-93 347.8 375 58.7
Pp3c1_35350 Physcomitrium patens HOM05D003606 ORTHO05D004650 1.3e-93 347.4 354 67.8
AagrBONN_evm.TU.Sc2ySwM_344.4930 Anthoceros agrestis HOM05D003606 ORTHO05D004650 4.2e-92 342.4 355 65.4
MD09G1280600 Malus domestica HOM05D003606 ORTHO05D004650 2.1e-91 340.1 320 70.0
Hund00228 Selenicereus undatus HOM05D003606 ORTHO05D004650 5.7e-89 332.0 365 57.3
Mapoly0082s0085 Marchantia polymorpha HOM05D003606 ORTHO05D004650 7.4e-89 331.6 354 64.7
BcaC04g20537 Brassica carinata HOM05D003606 ORTHO05D004650 1.7e-88 330.5 372 53.2
unitig_26.g10141 Utricularia gibba HOM05D003606 ORTHO05D004650 2.2e-88 330.1 381 56.4
CBR_g38286 Chara braunii HOM05D003606 ORTHO05D004650 2.8e-88 329.7 357 56.3
HPP92_026819 Vanilla planifolia HOM05D003606 ORTHO05D004650 1.3e-85 320.9 419 45.1
AUR62009405 Chenopodium quinoa HOM05D003606 ORTHO05D004650 3.0e-82 309.7 363 62.5
A10p29890 Brassica napus HOM05D003606 ORTHO05D004650 2.2e-80 303.5 375 52.0
SMO259G0032 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 7.0e-79 298.5 370 50.8
TPR.G7603 Trifolium pratense HOM05D003606 ORTHO05D004650 9.1e-79 298.1 297 64.6
MCO05G213 Micromonas commoda HOM05D003606 ORTHO05D004650 1.2e-75 287.7 356 50.6
BraA10t45027Z Brassica rapa HOM05D003606 ORTHO05D004650 8.8e-74 281.6 257 66.5
BcaC06g32566 Brassica carinata HOM05D003606 ORTHO05D004650 2.8e-72 276.6 366 46.2
COL.COLO4_04880 Corchorus olitorius HOM05D003606 ORTHO05D004650 1.9e-68 263.8 292 70.5
BcaNung05838 Brassica carinata HOM05D003606 ORTHO05D004650 2.8e-67 260.0 359 43.5
BraA10t43107Z Brassica rapa HOM05D003606 ORTHO05D004650 3.1e-63 246.5 261 57.5
A10p10270 Brassica napus HOM05D003606 ORTHO05D004650 4.5e-62 242.7 261 57.1
Ca_22822_v3 Cicer arietinum L. HOM05D003606 ORTHO05D000002 1.1e-60 238.0 159 71.1
PRCOL_00003575 Prasinoderma coloniale HOM05D003606 ORTHO05D004650 2.6e-57 226.9 373 46.1
Cre01.g000600 Chlamydomonas reinhardtii HOM05D003606 ORTHO05D004650 1.6e-54 217.6 361 48.8
Haze_26363 Corylus avellana HOM05D003606 ORTHO05D004650 2.7e-54 216.9 346 42.8
Sc03g0002540 Simmondsia chinensis HOM05D003606 ORTHO05D004650 8.3e-48 195.3 128 74.2
HanXRQChr15g0491881 Helianthus annuus HOM05D003606 ORTHO05D004650 4.6e-46 189.5 151 62.3
TAR636G3369 Trochodendron aralioides HOM05D003606 ORTHO05D003127 3.3e-36 156.8 151 57.0
Oeu060950.1 Olea europaea HOM05D003606 ORTHO05D016710 2.2e-32 144.1 186 44.6
CSS0037178 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 3.5e-30 136.7 66 95.5
BolC9t57121H Brassica oleracea HOM05D003606 ORTHO05D004650 3.6e-27 126.7 256 34.4
CSS0009389 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 6.2e-27 125.9 138 51.4
AUR62034729 Chenopodium quinoa HOM05D003606 ORTHO05D004650 6.2e-27 125.9 66 87.9
Cfa026891 Carpinus fangiana HOM05D003606 ORTHO05D004650 1.4e-26 124.8 359 32.9
C09p42410 Brassica napus HOM05D003606 ORTHO05D004650 3.4e-25 120.2 256 34.0
BolC9t57120H Brassica oleracea HOM05D003606 ORTHO05D033191 2.2e-24 117.5 88 64.8
CSS0038697 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D016710 1.4e-23 114.8 57 84.2
TPR.G39665 Trifolium pratense HOM05D003606 ORTHO05D033191 4.2e-23 113.2 73 71.2
Medtr0421s0030 Medicago truncatula HOM05D003606 ORTHO05D004650 6.6e-21 105.9 67 76.1
C09p42400 Brassica napus HOM05D003606 ORTHO05D033191 9.6e-20 102.1 77 62.3
BcaC06g33525 Brassica carinata HOM05D003606 ORTHO05D004650 2.4e-18 97.4 67 68.7
CANSAT51G0014 Cannabis sativa HOM05D003606 ORTHO05D004650 9.0e-18 95.5 83 56.6
Manes.07G009860 Manihot esculenta HOM05D003606 ORTHO05D004650 9.9e-17 92.0 45 91.1
BcaC01g02187 Brassica carinata HOM05D003606 ORTHO05D016710 1.9e-15 87.8 120 60.8
BcaNung04851 Brassica carinata HOM05D003606 ORTHO05D004650 3.5e-14 83.6 70 64.3
CSS0009074 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D043277 7.9e-14 82.4 43 86.0
CSS0037126 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D043277 7.9e-14 82.4 43 86.0
C02p14020 Brassica napus HOM05D003606 ORTHO05D016710 5.1e-13 79.7 164 32.3
BolC2t07520H Brassica oleracea HOM05D003606 ORTHO05D016710 1.8e-10 71.2 46 63.0
BraA10t45028Z Brassica rapa HOM05D003606 ORTHO05D004650 2.4e-10 70.9 57 64.9
CSS0046585 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 9.9e-09 65.5 56 62.5
SalBow4G2833 Salvia bowleyana HOM05D003606 ORTHO05D004650 2.2e-08 64.3 113 51.3
MD09G1280700 Malus domestica HOM05D003606 ORTHO05D004650 6.0e-06 56.2 28 85.7
QL11p012377 Quercus lobata HOM05D003606 ORTHO05D337401 7.9e-06 55.8 37 70.3


User provided reference genes

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