Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p004380 Quercus lobata HOM05D002012 ORTHO05D001992 5.1e-102 374.4 187 100.0
QL04p064492 Quercus lobata HOM05D002012 ORTHO05D001992 1.0e-30 137.5 80 86.2
QL09p042353 Quercus lobata HOM05D002012 ORTHO05D001992 3.4e-29 132.5 68 94.1
QL93p0869_0048 Quercus lobata HOM05D002012 ORTHO05D001992 2.2e-28 129.8 75 84.0
Cpa.g.sc87.50 Carica papaya HOM05D002012 ORTHO05D001992 8.1e-23 111.3 68 73.5
CiPaw.03G272000 Carya illinoinensis HOM05D002012 ORTHO05D001992 3.4e-21 105.9 68 72.1
Dinv43055 Davidia involucrata HOM05D002012 ORTHO05D001992 9.8e-21 104.4 68 67.6
Hma1.2p1_2051F.1_g312560 Hydrangea macrophylla HOM05D002012 ORTHO05D001992 9.8e-21 104.4 68 67.6
CiPaw.04G191100 Carya illinoinensis HOM05D002012 ORTHO05D001992 1.3e-20 104.0 69 68.1
Atru.chr5.1958 Acer truncatum HOM05D002012 ORTHO05D001992 1.7e-20 103.6 68 69.1
Cc01_g17700 Coffea canephora HOM05D002012 ORTHO05D001992 3.7e-20 102.4 68 63.2
Manes.13G038800 Manihot esculenta HOM05D002012 ORTHO05D001992 1.1e-19 100.9 88 54.5
Ciclev10018880m.g Citrus clementina HOM05D002012 ORTHO05D001992 1.4e-19 100.5 68 67.6
Sabra02G0194200 Salix brachista HOM05D002012 ORTHO05D001992 1.4e-19 100.5 66 69.7
TWI12G0950 Tripterygium wilfordii HOM05D002012 ORTHO05D001992 2.4e-19 99.8 85 60.0
ClCG06G001350 Citrullus lanatus HOM05D002012 ORTHO05D001992 4.1e-19 99.0 84 57.1
Rhsim13G0040500 Rhododendron simsii HOM05D002012 ORTHO05D001992 5.4e-19 98.6 68 67.6
Oeu052092.1 Olea europaea HOM05D002012 ORTHO05D001992 7.1e-19 98.2 68 64.7
MD05G1186700 Malus domestica HOM05D002012 ORTHO05D001992 1.6e-18 97.1 65 67.7
Potri.002G255500 Populus trichocarpa HOM05D002012 ORTHO05D001992 1.6e-18 97.1 66 68.2
Nn1g03012 Nelumbo nucifera HOM05D002012 ORTHO05D001992 2.1e-18 96.7 85 60.0
Peaxi162Scf00517g00034 Petunia axillaris HOM05D002012 ORTHO05D001992 4.6e-18 95.5 68 63.2
Thecc.01G248500 Theobroma cacao HOM05D002012 ORTHO05D001992 4.6e-18 95.5 68 61.8
Actinidia30117 Actinidia chinensis HOM05D002012 ORTHO05D001992 7.8e-18 94.7 68 63.2
CSS0050184 Camellia sinensis var. sinensis HOM05D002012 ORTHO05D001992 1.0e-17 94.4 70 60.0
MBI10_g39248_MAGBIO Magnolia biondii HOM05D002012 ORTHO05D001992 1.0e-17 94.4 68 61.8
CAN.G771.43 Capsicum annuum HOM05D002012 ORTHO05D001992 1.3e-17 94.0 68 60.3
Nitab4.5_0002538g0090 Nicotiana tabacum HOM05D002012 ORTHO05D001992 1.3e-17 94.0 68 58.8
Nitab4.5_0003167g0100 Nicotiana tabacum HOM05D002012 ORTHO05D001992 1.3e-17 94.0 68 58.8
Sabra02G0194100 Salix brachista HOM05D002012 ORTHO05D001992 1.3e-17 94.0 109 46.8
Ca_08757_v3 Cicer arietinum L. HOM05D002012 ORTHO05D001992 1.7e-17 93.6 88 52.3
MD10G1174800 Malus domestica HOM05D002012 ORTHO05D001992 1.7e-17 93.6 65 64.6
THA.LOC104814537 Tarenaya hassleriana HOM05D002012 ORTHO05D001992 1.7e-17 93.6 68 58.8
Duzib138G0128 Durio zibethinus HOM05D002012 ORTHO05D001992 3.0e-17 92.8 68 57.4
vmacro02714 Vaccinium macrocarpon HOM05D002012 ORTHO05D001992 3.0e-17 92.8 71 63.4
MELO3C022397.2 Cucumis melo HOM05D002012 ORTHO05D001992 3.9e-17 92.4 84 56.0
CsaV3_6G007290 Cucumis sativus L. HOM05D002012 ORTHO05D001992 5.1e-17 92.0 84 54.8
Sc17g0002730 Simmondsia chinensis HOM05D002012 ORTHO05D001992 5.1e-17 92.0 69 59.4
PGR044G2406 Punica granatum HOM05D002012 ORTHO05D001992 6.6e-17 91.7 100 50.0
BcaB03g16819 Brassica carinata HOM05D002012 ORTHO05D001992 1.5e-16 90.5 76 51.3
BcaB07g31600 Brassica carinata HOM05D002012 ORTHO05D001992 1.5e-16 90.5 68 55.9
A07p00390 Brassica napus HOM05D002012 ORTHO05D001992 1.5e-16 90.5 76 51.3
C07p00810 Brassica napus HOM05D002012 ORTHO05D001992 1.5e-16 90.5 76 51.3
BraA07t27831Z Brassica rapa HOM05D002012 ORTHO05D001992 1.5e-16 90.5 76 51.3
BraA09t36925Z Brassica rapa HOM05D002012 ORTHO05D001992 1.5e-16 90.5 68 55.9
Sp3g33560 Schrenkiella parvula HOM05D002012 ORTHO05D001992 1.5e-16 90.5 68 55.9
AUR62008816 Chenopodium quinoa HOM05D002012 ORTHO05D001992 1.9e-16 90.1 68 60.3
Solyc06g083710.3 Solanum lycopersicum HOM05D002012 ORTHO05D001992 1.9e-16 90.1 68 55.9
Sopen06g035130 Solanum pennellii HOM05D002012 ORTHO05D001992 1.9e-16 90.1 68 55.9
SHI26793 Sapria himalayana HOM05D000105 ORTHO05D000023 2.5e-16 89.7 67 64.2
GSVIVG01028445001 Vitis vinifera HOM05D002012 ORTHO05D001992 2.5e-16 89.7 69 66.7
Aqoxy5G00110 Aquilegia oxysepala HOM05D002012 ORTHO05D001992 3.3e-16 89.4 68 61.8
AL3G53270 Arabidopsis lyrata HOM05D002012 ORTHO05D001992 3.3e-16 89.4 68 55.9
BcaNung04797 Brassica carinata HOM05D002012 ORTHO05D001992 3.3e-16 89.4 68 54.4
C09p15180 Brassica napus HOM05D002012 ORTHO05D001992 3.3e-16 89.4 68 54.4
BolC9t54424H Brassica oleracea HOM05D002012 ORTHO05D001992 3.3e-16 89.4 68 54.4
THA.LOC104820065 Tarenaya hassleriana HOM05D002012 ORTHO05D001992 4.3e-16 89.0 68 55.9
A09p12820 Brassica napus HOM05D002012 ORTHO05D001992 5.6e-16 88.6 68 54.4
AUR62025424 Chenopodium quinoa HOM05D002012 ORTHO05D001992 5.6e-16 88.6 68 60.3
Psat3g052200 Pisum sativum HOM05D002012 ORTHO05D001992 5.6e-16 88.6 68 58.8
Aa31LG8G17310 Aethionema arabicum HOM05D002012 ORTHO05D001992 7.3e-16 88.2 68 54.4
MSTRG.17526 Avicennia marina HOM05D002012 ORTHO05D001992 7.3e-16 88.2 68 57.4
Carub.0003s3466 Capsella rubella HOM05D002012 ORTHO05D001992 7.3e-16 88.2 68 54.4
Medtr7g099030 Medicago truncatula HOM05D002012 ORTHO05D001992 7.3e-16 88.2 88 50.0
Sed0023546 Sechium edule HOM05D002012 ORTHO05D001992 9.5e-16 87.8 84 53.6
AT2G20320 Arabidopsis thaliana HOM05D002012 ORTHO05D001992 1.2e-15 87.4 68 54.4
CARHR110850 Cardamine hirsuta HOM05D002012 ORTHO05D001992 1.2e-15 87.4 68 54.4
Thhalv10001892m.g Eutrema salsugineum HOM05D002012 ORTHO05D001992 1.2e-15 87.4 68 54.4
Lj1C76G4 Lonicera japonica HOM05D002012 ORTHO05D001992 1.2e-15 87.4 68 61.8
Hund18299 Selenicereus undatus HOM05D002012 ORTHO05D001992 1.2e-15 87.4 67 59.7
TPR.G30853 Trifolium pratense HOM05D002012 ORTHO05D001992 1.2e-15 87.4 68 57.4
Lj1g0010723 Lotus japonicus HOM05D002012 ORTHO05D001992 1.6e-15 87.0 88 51.1
EL10Ac7g17707 Beta vulgaris HOM05D002012 ORTHO05D001992 2.1e-15 86.7 68 57.4
BcaC06g36715 Brassica carinata HOM05D002012 ORTHO05D001992 2.8e-15 86.3 76 50.0
BolC7t40520H Brassica oleracea HOM05D002012 ORTHO05D001992 2.8e-15 86.3 76 50.0
Manes.12G041101 Manihot esculenta HOM05D002012 ORTHO05D001992 2.8e-15 86.3 68 52.9
Prupe.8G213500 Prunus persica HOM05D002012 ORTHO05D001992 2.8e-15 86.3 68 58.8
PSO832G4575 Papaver somniferum HOM05D002012 ORTHO05D001992 4.7e-15 85.5 65 63.1
PSO210G6626 Papaver somniferum HOM05D002012 ORTHO05D001992 8.1e-15 84.7 65 63.1
ATR0787G023 Amborella trichopoda HOM05D002012 ORTHO05D001992 1.1e-14 84.3 67 56.7
Gohir.A11G134100 Gossypium hirsutum HOM05D002012 ORTHO05D001992 1.1e-14 84.3 68 54.4
Gohir.D11G140200 Gossypium hirsutum HOM05D002012 ORTHO05D001992 1.1e-14 84.3 68 54.4
Gorai.007G150400 Gossypium raimondii HOM05D002012 ORTHO05D001992 1.1e-14 84.3 68 54.4
Glyma.03G168600 Glycine max HOM05D002012 ORTHO05D001992 1.8e-14 83.6 68 60.3
MBI07_g21078_MAGBIO Magnolia biondii HOM05D002012 ORTHO05D001992 2.3e-14 83.2 68 55.9
Glyma.19G170000 Glycine max HOM05D002012 ORTHO05D001992 4.0e-14 82.4 64 62.5
Lalb_Chr01g0019471 Lupinus albus HOM05D002012 ORTHO05D001992 4.0e-14 82.4 88 47.7
Hund05494 Selenicereus undatus HOM05D002012 ORTHO05D001992 4.0e-14 82.4 68 57.4
Ah.08g213680 Amaranthus hybridus HOM05D002012 ORTHO05D001992 6.8e-14 81.6 68 55.9
Os03g0145500 Oryza sativa ssp. japonica HOM05D002012 ORTHO05D001992 1.2e-13 80.9 68 54.4
FvH4_2g20280 Fragaria vesca HOM05D002012 ORTHO05D001992 1.5e-13 80.5 64 57.8
FAN24G3044 Fragaria x ananassa HOM05D002012 ORTHO05D001992 1.5e-13 80.5 64 57.8
FAN27G2338 Fragaria x ananassa HOM05D002012 ORTHO05D001992 1.5e-13 80.5 64 57.8
FAN15G2348 Fragaria x ananassa HOM05D002012 ORTHO05D001992 2.0e-13 80.1 64 56.2
Gohir.A07G203700 Gossypium hirsutum HOM05D002012 ORTHO05D001992 2.0e-13 80.1 68 50.0
Gohir.D07G209700 Gossypium hirsutum HOM05D002012 ORTHO05D001992 2.0e-13 80.1 68 50.0
Gorai.001G237100 Gossypium raimondii HOM05D002012 ORTHO05D001992 2.0e-13 80.1 68 50.0
Ah.15g091510 Amaranthus hybridus HOM05D002012 ORTHO05D001992 2.6e-13 79.7 68 55.9
VMungo1383G3347 Vigna mungo HOM05D002012 ORTHO05D001992 9.9e-13 77.8 68 54.4
Zm00001eb402960 Zea mays HOM05D002012 ORTHO05D001992 9.9e-13 77.8 68 54.4
Haze_24719 Corylus avellana HOM05D002012 ORTHO05D001992 2.9e-12 76.3 46 76.1
RcHm_v2.0_Chr6g0286081 Rosa chinensis HOM05D002012 ORTHO05D001992 8.4e-12 74.7 65 52.3
arahy.Tifrunner.gnm1.ann1.NDA83R Arachis hypogaea HOM05D002012 ORTHO05D001992 1.1e-11 74.3 69 49.3
arahy.Tifrunner.gnm1.ann1.NJ6SD5 Arachis hypogaea HOM05D002012 ORTHO05D001992 1.1e-11 74.3 52 57.7
HanXRQChr01g0014901 Helianthus annuus HOM05D002012 ORTHO05D001992 1.1e-11 74.3 97 42.3
Migut.N02235 Erythranthe guttata HOM05D002012 ORTHO05D001992 1.4e-11 73.9 101 39.6
ECA248G2013 Erigeron canadensis HOM05D002012 ORTHO05D001992 1.9e-11 73.6 89 42.7
Lalb_Chr25g0289771 Lupinus albus HOM05D002012 ORTHO05D001992 1.9e-11 73.6 68 52.9
Phvul.001G167000 Phaseolus vulgaris HOM05D002012 ORTHO05D001992 2.4e-11 73.2 68 50.0
SMO228G0209 Selaginella moellendorffii HOM05D002012 ORTHO05D001992 5.4e-11 72.0 63 52.4
HPP92_022098 Vanilla planifolia HOM05D002012 ORTHO05D001992 1.2e-10 70.9 71 45.1
SalBow6G1269 Salvia bowleyana HOM05D002012 ORTHO05D001992 2.7e-10 69.7 64 53.1
SEGI_14720 Sequoiadendron giganteum HOM05D002012 ORTHO05D001992 5.1e-09 65.5 66 47.0
Mapoly0083s0022 Marchantia polymorpha HOM05D002012 ORTHO05D001992 8.6e-09 64.7 64 54.7
DCAR_026766 Daucus carota HOM05D002012 ORTHO05D001992 1.5e-08 63.9 64 45.3
SGA_v2.0_scaffold138G35174 Striga asiatica HOM05D002012 ORTHO05D001992 4.3e-08 62.4 131 32.1
AagrBONN_evm.TU.Sc2ySwM_117.1253 Anthoceros agrestis HOM05D002012 ORTHO05D001992 1.6e-07 60.5 65 44.6


User provided reference genes

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