Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p004359 Quercus lobata HOM05D004860 ORTHO05D337479 2.4e-49 199.1 153 100.0
QL06p004255 Quercus lobata HOM05D004860 ORTHO05D006366 1.2e-24 117.1 80 97.5
CiPaw.02G092200 Carya illinoinensis HOM05D004860 ORTHO05D006366 5.2e-12 75.1 57 63.2
MELO3C006570.2 Cucumis melo HOM05D004860 ORTHO05D006366 1.2e-11 73.9 57 64.9
CsaV3_3G013760 Cucumis sativus L. HOM05D004860 ORTHO05D006366 1.2e-11 73.9 57 64.9
Haze_00965 Corylus avellana HOM05D004860 ORTHO05D006366 1.5e-11 73.6 56 62.5
ClCG05G005460 Citrullus lanatus HOM05D004860 ORTHO05D006366 2.6e-11 72.8 57 63.2
SGA_v2.0_scaffold166G38376 Striga asiatica HOM05D004860 ORTHO05D006366 2.6e-11 72.8 57 64.9
VMungo1215G0515 Vigna mungo HOM05D004860 ORTHO05D006366 2.2e-10 69.7 55 65.5
vmacro08274 Vaccinium macrocarpon HOM05D004860 ORTHO05D006366 3.8e-10 68.9 54 63.0
Dinv44480 Davidia involucrata HOM05D001530 ORTHO05D004168 4.9e-10 68.6 57 64.9
THA.LOC104818790 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 6.4e-10 68.2 85 67.1
Glyma.07G256800 Glycine max HOM05D004860 ORTHO05D006366 8.4e-10 67.8 55 65.5
Glyma.17G017300 Glycine max HOM05D004860 ORTHO05D006366 8.4e-10 67.8 55 65.5
Migut.N00151 Erythranthe guttata HOM05D004860 ORTHO05D006366 1.4e-09 67.0 61 60.7
MD13G1182900 Malus domestica HOM05D004860 ORTHO05D006366 1.4e-09 67.0 56 60.7
MD16G1183500 Malus domestica HOM05D004860 ORTHO05D006366 1.4e-09 67.0 56 60.7
Lj4g0005512 Lotus japonicus HOM05D004860 ORTHO05D006366 4.1e-09 65.5 57 63.2
Oeu029304.1 Olea europaea HOM05D004860 ORTHO05D006366 4.1e-09 65.5 58 62.1
BcaB08g36622 Brassica carinata HOM05D004860 ORTHO05D006366 5.4e-09 65.1 54 63.0
FAN07G1456 Fragaria x ananassa HOM05D004860 ORTHO05D006366 5.4e-09 65.1 56 58.9
FAN22G2324 Fragaria x ananassa HOM05D004860 ORTHO05D006366 5.4e-09 65.1 83 48.2
RcHm_v2.0_Chr4g0418381 Rosa chinensis HOM05D004860 ORTHO05D006366 5.4e-09 65.1 56 58.9
Sed0000368 Sechium edule HOM05D004860 ORTHO05D006366 5.4e-09 65.1 58 55.2
CANSAT78G2493 Cannabis sativa HOM05D004860 ORTHO05D006366 9.2e-09 64.3 84 67.9
Thhalv10013904m.g Eutrema salsugineum HOM05D004860 ORTHO05D006366 9.2e-09 64.3 57 63.2
Phvul.003G093000 Phaseolus vulgaris HOM05D004860 ORTHO05D006366 9.2e-09 64.3 53 62.3
Actinidia40192 Actinidia chinensis HOM05D004860 ORTHO05D006366 1.2e-08 63.9 57 59.6
arahy.Tifrunner.gnm1.ann1.PDW3QZ Arachis hypogaea HOM05D004860 ORTHO05D006366 1.2e-08 63.9 57 63.2
arahy.Tifrunner.gnm1.ann1.K193BP Arachis hypogaea HOM05D004860 ORTHO05D006366 1.6e-08 63.5 57 63.2
Carub.0006s1737 Capsella rubella HOM05D004860 ORTHO05D006366 1.6e-08 63.5 60 61.7
Nitab4.5_0001247g0010 Nicotiana tabacum HOM05D004860 ORTHO05D006366 1.6e-08 63.5 58 62.1
Actinidia12990 Actinidia chinensis HOM05D004860 ORTHO05D006366 2.1e-08 63.2 57 57.9
Ah.13g074180 Amaranthus hybridus HOM05D004860 ORTHO05D006366 2.1e-08 63.2 58 56.9
CARHR193940 Cardamine hirsuta HOM05D004860 ORTHO05D006366 2.1e-08 63.2 57 63.2
CAN.G183.30 Capsicum annuum HOM05D004860 ORTHO05D006366 2.7e-08 62.8 58 60.3
Potri.008G202300 Populus trichocarpa HOM05D004860 ORTHO05D006366 2.7e-08 62.8 57 61.4
PGR031G2771 Punica granatum HOM05D004860 ORTHO05D006366 2.7e-08 62.8 57 61.4
Sopen01g031920 Solanum pennellii HOM05D004860 ORTHO05D006366 3.5e-08 62.4 60 60.0
EL10Ac3g06352 Beta vulgaris HOM05D004860 ORTHO05D006366 4.6e-08 62.0 61 55.7
Sp6g25330 Schrenkiella parvula HOM05D004860 ORTHO05D006366 4.6e-08 62.0 57 61.4
AL6G30430 Arabidopsis lyrata HOM05D004860 ORTHO05D006366 6.0e-08 61.6 59 61.0
AT5G19050 Arabidopsis thaliana HOM05D004860 ORTHO05D006366 6.0e-08 61.6 59 61.0
Dinv38393 Davidia involucrata HOM05D001530 ORTHO05D004168 6.0e-08 61.6 57 59.6
Rhsim04G0207200 Rhododendron simsii HOM05D004860 ORTHO05D006366 6.0e-08 61.6 56 60.7
Solyc01g080140.3 Solanum lycopersicum HOM05D004860 ORTHO05D006366 6.0e-08 61.6 60 60.0
TWI73G0632 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 6.0e-08 61.6 57 57.9
FvH4_4g14470 Fragaria vesca HOM05D004860 ORTHO05D006366 7.8e-08 61.2 56 55.4
FAN12G3962 Fragaria x ananassa HOM05D004860 ORTHO05D006366 7.8e-08 61.2 56 55.4
SalBow5G0733 Salvia bowleyana HOM05D004860 ORTHO05D006366 7.8e-08 61.2 56 60.7
SalBow5G4413 Salvia bowleyana HOM05D004860 ORTHO05D006366 7.8e-08 61.2 56 60.7
A10p20640 Brassica napus HOM05D004860 ORTHO05D006366 1.0e-07 60.8 56 57.1
Lsat_1_v5_gn_7_67361 Lactuca sativa HOM05D004860 ORTHO05D006366 1.0e-07 60.8 55 52.7
Sc13g0003950 Simmondsia chinensis HOM05D004860 ORTHO05D006366 1.0e-07 60.8 54 59.3
Ah.07g203980 Amaranthus hybridus HOM05D004860 ORTHO05D006366 1.7e-07 60.1 58 51.7
CSS0038220 Camellia sinensis var. sinensis HOM05D004860 ORTHO05D006366 1.7e-07 60.1 57 57.9
THA.LOC104822311 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 1.7e-07 60.1 58 58.6
Thecc.04G221400 Theobroma cacao HOM05D004860 ORTHO05D006366 1.7e-07 60.1 58 58.6
BcaC04g18624 Brassica carinata HOM05D004860 ORTHO05D006366 2.3e-07 59.7 55 60.0
C09p57430 Brassica napus HOM05D004860 ORTHO05D006366 2.3e-07 59.7 55 60.0
Duzib268G1873 Durio zibethinus HOM05D004860 ORTHO05D006366 2.3e-07 59.7 57 59.6
A03p09270 Brassica napus HOM05D004860 ORTHO05D006366 3.0e-07 59.3 58 58.6
BraA03t10247Z Brassica rapa HOM05D004860 ORTHO05D006366 3.0e-07 59.3 58 58.6
Aa31LG11G10670 Aethionema arabicum HOM05D004860 ORTHO05D006366 3.9e-07 58.9 57 57.9
Manes.15G022900 Manihot esculenta HOM05D004860 ORTHO05D006366 3.9e-07 58.9 83 48.2
TWI53G0789 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 3.9e-07 58.9 55 61.8
BcaB01g05289 Brassica carinata HOM05D004860 ORTHO05D006366 5.1e-07 58.5 58 58.6
C03p10800 Brassica napus HOM05D004860 ORTHO05D006366 5.1e-07 58.5 58 58.6
BolC3t13554H Brassica oleracea HOM05D004860 ORTHO05D006366 5.1e-07 58.5 58 58.6
Cpa.g.sc16.26 Carica papaya HOM05D004860 ORTHO05D006366 5.1e-07 58.5 54 55.6
CiPaw.01G159800 Carya illinoinensis HOM05D004860 ORTHO05D006366 5.1e-07 58.5 83 63.9
MSTRG.24756 Avicennia marina HOM05D004860 ORTHO05D006366 6.6e-07 58.2 59 52.5
Medtr4g117310 Medicago truncatula HOM05D004860 ORTHO05D006366 6.6e-07 58.2 55 56.4
TAR636G2819 Trochodendron aralioides HOM05D004860 ORTHO05D006366 6.6e-07 58.2 57 56.1
BolC9t58612H Brassica oleracea HOM05D004860 ORTHO05D006366 8.6e-07 57.8 55 58.2
BraA10t44127Z Brassica rapa HOM05D004860 ORTHO05D006366 8.6e-07 57.8 56 55.4
Gohir.A05G316600 Gossypium hirsutum HOM05D004860 ORTHO05D006366 8.6e-07 57.8 58 56.9
Gohir.D05G318100 Gossypium hirsutum HOM05D004860 ORTHO05D006366 8.6e-07 57.8 58 56.9
Peaxi162Scf01766g00011 Petunia axillaris HOM05D004860 ORTHO05D006366 8.6e-07 57.8 56 57.1
TPR.G20138 Trifolium pratense HOM05D004860 ORTHO05D006366 8.6e-07 57.8 58 55.2
Gorai.009G340700 Gossypium raimondii HOM05D004860 ORTHO05D006366 1.1e-06 57.4 57 57.9
MBI17_g12009_MAGBIO Magnolia biondii HOM05D004860 ORTHO05D006366 1.1e-06 57.4 53 60.4
Manes.03G184900 Manihot esculenta HOM05D004860 ORTHO05D006366 1.1e-06 57.4 88 64.8
Eucgr.D02658 Eucalyptus grandis HOM05D004860 ORTHO05D006366 1.5e-06 57.0 56 58.9


User provided reference genes

Program Settings