Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p004255 Quercus lobata HOM05D004860 ORTHO05D006366 3.6e-186 654.8 348 100.0
CiPaw.02G092200 Carya illinoinensis HOM05D004860 ORTHO05D006366 5.8e-160 567.8 324 86.7
MD16G1183500 Malus domestica HOM05D004860 ORTHO05D006366 1.0e-159 567.0 324 86.7
ClCG05G005460 Citrullus lanatus HOM05D004860 ORTHO05D006366 1.4e-158 563.1 325 84.3
MELO3C006570.2 Cucumis melo HOM05D004860 ORTHO05D006366 1.9e-158 562.8 325 84.0
Potri.008G202300 Populus trichocarpa HOM05D004860 ORTHO05D006366 1.6e-157 559.7 325 85.8
CsaV3_3G013760 Cucumis sativus L. HOM05D004860 ORTHO05D006366 6.1e-157 557.8 325 83.4
PGR031G2771 Punica granatum HOM05D004860 ORTHO05D006366 7.9e-157 557.4 325 85.5
MD13G1182900 Malus domestica HOM05D004860 ORTHO05D006366 6.7e-156 554.3 324 84.6
CANSAT78G2493 Cannabis sativa HOM05D004860 ORTHO05D006366 1.9e-155 552.7 352 84.4
TWI73G0632 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 9.7e-155 550.4 325 85.5
CSS0038220 Camellia sinensis var. sinensis HOM05D004860 ORTHO05D006366 1.3e-154 550.1 324 85.5
Eucgr.D02658 Eucalyptus grandis HOM05D004860 ORTHO05D006366 1.3e-154 550.1 324 85.2
TAR636G2819 Trochodendron aralioides HOM05D004860 ORTHO05D006366 1.6e-154 549.7 325 84.6
Actinidia40192 Actinidia chinensis HOM05D004860 ORTHO05D006366 2.8e-154 548.9 324 84.3
FAN07G1456 Fragaria x ananassa HOM05D004860 ORTHO05D006366 2.8e-154 548.9 324 83.3
Sed0000368 Sechium edule HOM05D004860 ORTHO05D006366 4.8e-154 548.1 326 82.5
Thecc.04G221400 Theobroma cacao HOM05D004860 ORTHO05D006366 4.8e-154 548.1 325 84.6
Haze_00965 Corylus avellana HOM05D004860 ORTHO05D006366 8.2e-154 547.4 401 71.3
RcHm_v2.0_Chr4g0418381 Rosa chinensis HOM05D004860 ORTHO05D006366 1.4e-153 546.6 324 83.0
FAN22G2324 Fragaria x ananassa HOM05D004860 ORTHO05D006366 5.3e-153 544.7 351 78.6
Duzib268G1873 Durio zibethinus HOM05D004860 ORTHO05D006366 9.0e-153 543.9 324 84.6
FvH4_4g14470 Fragaria vesca HOM05D004860 ORTHO05D006366 1.2e-152 543.5 324 83.0
FAN12G3962 Fragaria x ananassa HOM05D004860 ORTHO05D006366 2.0e-152 542.7 324 83.0
THA.LOC104818790 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 2.6e-152 542.3 360 81.7
Nn4g26191 Nelumbo nucifera HOM05D004860 ORTHO05D006366 5.9e-152 541.2 324 84.0
Gohir.A05G316600 Gossypium hirsutum HOM05D004860 ORTHO05D006366 1.3e-151 540.0 325 84.0
Ah.07g203980 Amaranthus hybridus HOM05D004860 ORTHO05D006366 6.5e-151 537.7 325 81.5
Cfa015580 Carpinus fangiana HOM05D004860 ORTHO05D006366 1.1e-150 537.0 307 86.6
GSVIVG01017886001 Vitis vinifera HOM05D004860 ORTHO05D006366 1.1e-150 537.0 303 88.1
Ciclev10005293m.g Citrus clementina HOM05D004860 ORTHO05D006366 1.9e-150 536.2 357 82.9
Lj4g0005512 Lotus japonicus HOM05D004860 ORTHO05D006366 2.5e-150 535.8 325 82.2
Solyc01g080140.3 Solanum lycopersicum HOM05D004860 ORTHO05D006366 2.5e-150 535.8 328 81.7
Manes.15G022900 Manihot esculenta HOM05D004860 ORTHO05D006366 3.2e-150 535.4 350 78.0
Sopen01g031920 Solanum pennellii HOM05D004860 ORTHO05D006366 3.2e-150 535.4 328 81.7
Dinv38393 Davidia involucrata HOM05D001530 ORTHO05D004168 4.2e-150 535.0 319 85.9
Glyma.07G256800 Glycine max HOM05D004860 ORTHO05D006366 1.6e-149 533.1 322 82.6
Glyma.17G017300 Glycine max HOM05D004860 ORTHO05D006366 1.6e-149 533.1 322 82.6
Duzib212G0960 Durio zibethinus HOM05D004860 ORTHO05D006366 6.1e-149 531.2 330 82.4
Nitab4.5_0001247g0010 Nicotiana tabacum HOM05D004860 ORTHO05D006366 2.3e-148 529.3 326 82.2
TAR365G0160 Trochodendron aralioides HOM05D004860 ORTHO05D006366 2.3e-148 529.3 321 83.2
AT5G19050 Arabidopsis thaliana HOM05D004860 ORTHO05D006366 3.0e-148 528.9 326 81.9
Gorai.009G340700 Gossypium raimondii HOM05D004860 ORTHO05D006366 5.1e-148 528.1 339 80.5
Oeu029304.1 Olea europaea HOM05D004860 ORTHO05D006366 5.1e-148 528.1 325 81.5
Migut.N00151 Erythranthe guttata HOM05D004860 ORTHO05D006366 6.7e-148 527.7 328 80.8
arahy.Tifrunner.gnm1.ann1.PDW3QZ Arachis hypogaea HOM05D004860 ORTHO05D006366 1.1e-147 526.9 325 81.5
Phvul.003G093000 Phaseolus vulgaris HOM05D004860 ORTHO05D006366 1.1e-147 526.9 320 81.6
THA.LOC104822311 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 1.1e-147 526.9 325 80.9
Thhalv10013904m.g Eutrema salsugineum HOM05D004860 ORTHO05D006366 1.5e-147 526.6 324 81.8
arahy.Tifrunner.gnm1.ann1.K193BP Arachis hypogaea HOM05D004860 ORTHO05D006366 2.0e-147 526.2 325 81.8
Carub.0006s1737 Capsella rubella HOM05D004860 ORTHO05D006366 3.3e-147 525.4 327 81.0
CARHR193940 Cardamine hirsuta HOM05D004860 ORTHO05D006366 4.3e-147 525.0 324 81.2
Ah.13g074180 Amaranthus hybridus HOM05D004860 ORTHO05D006366 5.7e-147 524.6 325 80.0
Atru.chr4.2574 Acer truncatum HOM05D004860 ORTHO05D006366 1.3e-146 523.5 321 79.4
Sp6g25330 Schrenkiella parvula HOM05D004860 ORTHO05D006366 1.3e-146 523.5 324 81.2
BcaB08g36622 Brassica carinata HOM05D004860 ORTHO05D006366 2.2e-146 522.7 321 80.7
A10p20640 Brassica napus HOM05D004860 ORTHO05D006366 2.2e-146 522.7 323 80.5
Medtr4g117310 Medicago truncatula HOM05D004860 ORTHO05D006366 2.2e-146 522.7 322 80.4
BolC3t13554H Brassica oleracea HOM05D004860 ORTHO05D006366 2.8e-146 522.3 325 80.6
Aa31LG11G10670 Aethionema arabicum HOM05D004860 ORTHO05D006366 3.7e-146 521.9 335 79.7
AL6G30430 Arabidopsis lyrata HOM05D004860 ORTHO05D006366 4.8e-146 521.5 326 81.0
COL.COLO4_21645 Corchorus olitorius HOM05D004860 ORTHO05D006366 6.3e-146 521.2 304 84.2
BcaB01g05289 Brassica carinata HOM05D004860 ORTHO05D006366 1.4e-145 520.0 325 80.3
SalBow5G0733 Salvia bowleyana HOM05D004860 ORTHO05D006366 1.4e-145 520.0 330 79.7
SalBow5G4413 Salvia bowleyana HOM05D004860 ORTHO05D006366 1.4e-145 520.0 330 79.7
BcaC04g18624 Brassica carinata HOM05D004860 ORTHO05D006366 1.8e-145 519.6 322 80.7
BolC9t58612H Brassica oleracea HOM05D004860 ORTHO05D006366 1.8e-145 519.6 322 80.7
BraA10t44127Z Brassica rapa HOM05D004860 ORTHO05D006366 1.8e-145 519.6 323 80.2
TPR.G20138 Trifolium pratense HOM05D004860 ORTHO05D006366 1.8e-145 519.6 326 79.1
Cc03_g03100 Coffea canephora HOM05D004860 ORTHO05D006366 2.4e-145 519.2 306 84.3
Lalb_Chr07g0177321 Lupinus albus HOM05D004860 ORTHO05D006366 2.4e-145 519.2 321 79.1
C09p57430 Brassica napus HOM05D004860 ORTHO05D006366 3.1e-145 518.8 322 80.7
MBI17_g12009_MAGBIO Magnolia biondii HOM05D004860 ORTHO05D006366 3.1e-145 518.8 320 81.9
BraA03t10247Z Brassica rapa HOM05D004860 ORTHO05D006366 4.1e-145 518.5 325 80.3
EL10Ac3g06352 Beta vulgaris HOM05D004860 ORTHO05D006366 6.9e-145 517.7 366 72.4
BcaB01g04878 Brassica carinata HOM05D004860 ORTHO05D006366 4.5e-144 515.0 325 80.0
MSTRG.24756 Avicennia marina HOM05D004860 ORTHO05D006366 1.7e-143 513.1 326 78.5
Psat4g031440 Pisum sativum HOM05D004860 ORTHO05D006366 2.9e-143 512.3 325 78.8
PSO407G0112 Papaver somniferum HOM05D004860 ORTHO05D006366 3.8e-143 511.9 328 79.3
ECA240G4413 Erigeron canadensis HOM05D004860 ORTHO05D006366 5.0e-143 511.5 300 83.0
Ca_21591_v3 Cicer arietinum L. HOM05D004860 ORTHO05D006366 8.5e-143 510.8 307 81.4
PSO170G1688 Papaver somniferum HOM05D004860 ORTHO05D006366 1.4e-142 510.0 328 79.0
Lj3C761T9 Lonicera japonica HOM05D004860 ORTHO05D006366 1.0e-140 503.8 319 77.7
C03p10800 Brassica napus HOM05D004860 ORTHO05D006366 1.4e-140 503.4 319 79.9
HanXRQChr09g0248101 Helianthus annuus HOM05D004860 ORTHO05D006366 1.8e-140 503.1 290 84.1
Aqoxy2G03261 Aquilegia oxysepala HOM05D004860 ORTHO05D006366 8.8e-140 500.7 288 84.4
Prupe.1G151200 Prunus persica HOM05D004860 ORTHO05D006366 1.5e-139 500.0 269 90.0
CiPaw.01G159800 Carya illinoinensis HOM05D004860 ORTHO05D006366 5.7e-139 498.0 350 79.1
AUR62030079 Chenopodium quinoa HOM05D004860 ORTHO05D006366 5.7e-139 498.0 283 85.2
CAN.G183.30 Capsicum annuum HOM05D004860 ORTHO05D006366 7.4e-139 497.7 326 78.5
Peaxi162Scf01766g00011 Petunia axillaris HOM05D004860 ORTHO05D006366 1.3e-138 496.9 324 78.1
Cpa.g.sc16.26 Carica papaya HOM05D004860 ORTHO05D006366 4.8e-138 495.0 323 77.4
CDE02G3435 Ceratophyllum demersum HOM05D004860 ORTHO05D006366 6.3e-138 494.6 325 75.1
Lsat_1_v5_gn_7_67361 Lactuca sativa HOM05D004860 ORTHO05D006366 2.4e-137 492.7 322 76.7
SEGI_28969 Sequoiadendron giganteum HOM05D004860 ORTHO05D006366 3.8e-135 485.3 290 80.7
A03p09270 Brassica napus HOM05D004860 ORTHO05D006366 1.1e-134 483.8 310 79.7
Gohir.D05G318100 Gossypium hirsutum HOM05D004860 ORTHO05D006366 1.9e-134 483.0 325 77.2
Zm00001eb303280 Zea mays HOM05D004860 ORTHO05D006366 2.1e-133 479.6 336 72.0
Os07g0211800 Oryza sativa ssp. japonica HOM05D004860 ORTHO05D006366 4.0e-132 475.3 286 80.4
unitig_8.g2879 Utricularia gibba HOM05D004860 ORTHO05D006366 3.3e-131 472.2 307 76.2
Hund12197 Selenicereus undatus HOM05D004860 ORTHO05D000105 1.1e-129 467.2 270 84.1
AUR62038223 Chenopodium quinoa HOM05D004860 ORTHO05D006366 2.4e-129 466.1 269 84.8
Dinv44480 Davidia involucrata HOM05D001530 ORTHO05D004168 9.1e-129 464.2 316 77.8
Actinidia12990 Actinidia chinensis HOM05D004860 ORTHO05D006366 7.7e-128 461.1 341 71.8
Migut.G00288 Erythranthe guttata HOM05D004860 ORTHO05D006366 3.8e-127 458.8 324 73.5
Sabra08G0159200 Salix brachista HOM05D004860 ORTHO05D006366 4.0e-124 448.7 244 89.3
Lj6A565G28 Lonicera japonica HOM05D004860 ORTHO05D006366 2.8e-122 442.6 282 80.1
vmacro08274 Vaccinium macrocarpon HOM05D004860 ORTHO05D006366 6.3e-122 441.4 298 76.5
Rhsim04G0207200 Rhododendron simsii HOM05D004860 ORTHO05D006366 1.9e-118 429.9 315 73.0
AagrBONN_evm.TU.Sc2ySwM_117.2400 Anthoceros agrestis HOM05D004860 ORTHO05D006366 6.1e-117 424.9 316 66.5
Pp3c4_4720 Physcomitrium patens HOM05D004860 ORTHO05D006366 1.4e-116 423.7 293 67.6
TWI53G0789 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 4.0e-116 422.2 257 84.4
SMO119G0283 Selaginella moellendorffii HOM05D004860 ORTHO05D006366 9.8e-115 417.5 285 72.3
Nn1g02160 Nelumbo nucifera HOM05D004860 ORTHO05D006366 2.2e-114 416.4 279 77.4
Mapoly0095s0018 Marchantia polymorpha HOM05D004860 ORTHO05D006366 7.7e-112 407.9 270 71.5
Manes.03G184900 Manihot esculenta HOM05D004860 ORTHO05D006366 5.0e-111 405.2 291 79.0
SGA_v2.0_scaffold166G38376 Striga asiatica HOM05D004860 ORTHO05D006366 1.8e-108 396.7 279 74.6
ATR0626G115 Amborella trichopoda HOM05D004860 ORTHO05D006366 7.5e-107 391.3 252 78.2
SalBow2G3077 Salvia bowleyana HOM05D004860 ORTHO05D006366 8.3e-98 361.3 318 61.6
Oeu017197.2 Olea europaea HOM05D004860 ORTHO05D006366 2.8e-93 346.3 226 77.9
Sc13g0003950 Simmondsia chinensis HOM05D004860 ORTHO05D006366 6.8e-92 341.7 216 81.9
VMungo1215G0515 Vigna mungo HOM05D004860 ORTHO05D006366 1.4e-89 334.0 217 78.8
Eucgr.B01143 Eucalyptus grandis HOM05D004860 ORTHO05D006366 6.9e-68 261.9 152 81.6
Actinidia23474 Actinidia chinensis HOM05D004860 ORTHO05D006366 2.2e-66 256.9 326 48.8
FAN17G0307 Fragaria x ananassa HOM05D004860 ORTHO05D006366 5.1e-63 245.7 138 83.3
SHI00370 Sapria himalayana HOM05D004860 ORTHO05D000023 2.1e-61 240.4 139 85.6
HPP92_027344 Vanilla planifolia HOM05D004860 ORTHO05D006366 2.8e-61 240.0 167 72.5
Nitab4.5_0002954g0030 Nicotiana tabacum HOM05D004860 ORTHO05D006366 6.7e-55 218.8 150 77.3
Hund22791 Selenicereus undatus HOM05D004860 ORTHO05D006366 1.1e-54 218.0 130 79.2
VMungo1215G0712 Vigna mungo HOM05D004860 ORTHO05D006366 5.8e-51 205.7 107 86.9
Cc02_g31730 Coffea canephora HOM05D004860 ORTHO05D006366 3.2e-49 199.9 106 84.9
PRCOL_00003006 Prasinoderma coloniale HOM05D004860 ORTHO05D006366 3.9e-39 166.4 277 43.0
CBR_g23274 Chara braunii HOM05D004860 ORTHO05D006366 2.5e-38 163.7 129 60.5
Cc09_g08330 Coffea canephora HOM05D004860 ORTHO05D006366 3.1e-36 156.8 110 69.1
Cre06.g283034 Chlamydomonas reinhardtii HOM05D004860 ORTHO05D006366 1.9e-33 147.5 305 32.8
Cc01_g03740 Coffea canephora HOM05D004860 ORTHO05D006366 3.6e-32 143.3 115 62.6
SHI00369 Sapria himalayana HOM05D004860 ORTHO05D006366 2.6e-27 127.1 124 54.8
QL06p004359 Quercus lobata HOM05D004860 ORTHO05D337479 2.1e-24 117.5 80 97.5
DCAR_002416 Daucus carota HOM05D004860 ORTHO05D006366 1.4e-23 114.8 84 65.5
Mapoly0174s0021 Marchantia polymorpha HOM05D004860 ORTHO05D006366 8.8e-23 112.1 87 62.1
Cfa023854 Carpinus fangiana HOM05D004860 ORTHO05D126341 1.5e-22 111.3 287 31.7
A02p05180 Brassica napus HOM05D004860 ORTHO05D006366 4.5e-19 99.8 92 60.9
BraA02t05478Z Brassica rapa HOM05D004860 ORTHO05D006366 5.9e-19 99.4 93 61.3
THA.LOC104820105 Tarenaya hassleriana HOM05D001530 ORTHO05D004168 2.2e-18 97.4 53 90.6
DCAR_030597 Daucus carota HOM05D004860 ORTHO05D006366 8.5e-18 95.5 50 86.0
HPP92_027343 Vanilla planifolia HOM05D004860 ORTHO05D006366 8.5e-18 95.5 71 66.2
Lj6C565T4 Lonicera japonica HOM05D004860 ORTHO05D006366 1.2e-16 91.7 51 76.5
CBR_g23273 Chara braunii HOM05D004860 ORTHO05D006366 8.0e-16 89.0 79 54.4
Cc00_g00380 Coffea canephora HOM05D004860 ORTHO05D006366 8.8e-15 85.5 51 76.5
Cc11_g00440 Coffea canephora HOM05D004860 ORTHO05D005444 2.2e-10 70.9 37 81.1
BcaB07g33046 Brassica carinata HOM05D004860 ORTHO05D005738 2.6e-06 57.4 50 62.0
HPP92_017189 Vanilla planifolia HOM05D004860 ORTHO05D006366 2.6e-06 57.4 31 83.9


User provided reference genes

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