Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p004212 Quercus lobata HOM05D007677 ORTHO05D009728 4.0e-98 361.3 167 100.0
CiPaw.01G160100 Carya illinoinensis HOM05D007677 ORTHO05D009728 3.3e-84 315.1 167 86.2
Ciclev10006064m.g Citrus clementina HOM05D007677 ORTHO05D009728 9.9e-81 303.5 169 82.8
Thecc.04G221700 Theobroma cacao HOM05D007677 ORTHO05D009728 2.9e-80 302.0 167 82.0
Duzib212G0325 Durio zibethinus HOM05D001530 ORTHO05D003676 7.3e-76 287.3 162 80.9
COL.COLO4_21648 Corchorus olitorius HOM05D007677 ORTHO05D009728 1.2e-75 286.6 151 86.1
Prupe.1G151500 Prunus persica HOM05D007677 ORTHO05D009728 1.2e-75 286.6 169 79.9
Cfa015583 Carpinus fangiana HOM05D007677 ORTHO05D009728 2.1e-75 285.8 167 80.8
CiPaw.02G092500 Carya illinoinensis HOM05D007677 ORTHO05D009728 1.1e-74 283.5 148 87.2
CANSAT78G2143 Cannabis sativa HOM05D007677 ORTHO05D009728 4.0e-74 281.6 175 77.1
Manes.03G184600 Manihot esculenta HOM05D007677 ORTHO05D009728 9.0e-74 280.4 149 85.9
Gohir.A02G031000 Gossypium hirsutum HOM05D007677 ORTHO05D009728 2.0e-73 279.3 168 77.4
FvH4_4g14500 Fragaria vesca HOM05D007677 ORTHO05D009728 5.8e-73 277.7 168 78.0
FAN12G4178 Fragaria x ananassa HOM05D007677 ORTHO05D009728 5.8e-73 277.7 168 78.0
MD13G1183200 Malus domestica HOM05D007677 ORTHO05D009728 1.7e-72 276.2 173 76.3
FAN07G0089 Fragaria x ananassa HOM05D007677 ORTHO05D009728 6.4e-72 274.2 168 76.8
RcHm_v2.0_Chr4g0418331 Rosa chinensis HOM05D007677 ORTHO05D009728 6.4e-72 274.2 168 76.8
MD16G1184100 Malus domestica HOM05D007677 ORTHO05D009728 1.1e-71 273.5 173 76.3
Gorai.005G041800 Gossypium raimondii HOM05D007677 ORTHO05D009728 1.4e-71 273.1 173 74.6
Gohir.D02G037900 Gossypium hirsutum HOM05D007677 ORTHO05D009728 1.9e-71 272.7 168 76.2
Haze_00962 Corylus avellana HOM05D007677 ORTHO05D009728 2.1e-70 269.2 148 85.1
Phvul.003G092600 Phaseolus vulgaris HOM05D007677 ORTHO05D009728 6.0e-70 267.7 150 80.7
ClCG05G005440 Citrullus lanatus HOM05D007677 ORTHO05D009728 7.8e-70 267.3 148 81.8
CsaV3_3G013730 Cucumis sativus L. HOM05D007677 ORTHO05D009728 7.8e-70 267.3 148 81.8
MELO3C006567.2 Cucumis melo HOM05D007677 ORTHO05D009728 1.0e-69 266.9 148 81.1
VMungo1215G2604 Vigna mungo HOM05D007677 ORTHO05D009728 1.1e-68 263.5 150 80.0
TWI09G0567 Tripterygium wilfordii HOM05D007677 ORTHO05D009728 3.3e-68 261.9 153 79.7
Glyma.17G017000 Glycine max HOM05D007677 ORTHO05D009728 7.3e-68 260.8 150 80.0
Lj4g0019321 Lotus japonicus HOM05D007677 ORTHO05D009728 4.8e-67 258.1 158 75.9
Sabra10G0011000 Salix brachista HOM05D001530 ORTHO05D004168 6.2e-67 257.7 151 78.8
Sed0011127 Sechium edule HOM05D007677 ORTHO05D009728 6.2e-67 257.7 148 78.4
Phvul.006G153800 Phaseolus vulgaris HOM05D007677 ORTHO05D009728 8.1e-67 257.3 150 78.7
Glyma.15G104100 Glycine max HOM05D007677 ORTHO05D009728 1.2e-65 253.4 157 74.5
Glyma.13G208700 Glycine max HOM05D007677 ORTHO05D009728 1.5e-65 253.1 150 77.3
Eucgr.H03598 Eucalyptus grandis HOM05D007677 ORTHO05D009728 1.7e-64 249.6 149 77.9
arahy.Tifrunner.gnm1.ann1.PDVV0K Arachis hypogaea HOM05D007677 ORTHO05D009728 3.8e-64 248.4 152 76.3
Nn1g02165 Nelumbo nucifera HOM05D007677 ORTHO05D009728 4.9e-64 248.1 148 76.4
Glyma.07G257100 Glycine max HOM05D007677 ORTHO05D009728 6.4e-64 247.7 150 76.7
arahy.Tifrunner.gnm1.ann1.UI8DPT Arachis hypogaea HOM05D007677 ORTHO05D009728 9.3e-63 243.8 152 75.0
TPR.G30685 Trifolium pratense HOM05D007677 ORTHO05D009728 9.3e-63 243.8 150 74.0
Medtr2g022190 Medicago truncatula HOM05D007677 ORTHO05D009728 2.1e-62 242.7 150 75.3
DCAR_030598 Daucus carota HOM05D007677 ORTHO05D009728 4.6e-62 241.5 165 67.3
Medtr4g117270 Medicago truncatula HOM05D007677 ORTHO05D009728 7.9e-62 240.7 161 70.2
Lalb_Chr18g0056081 Lupinus albus HOM05D007677 ORTHO05D009728 3.9e-61 238.4 164 69.5
Ca_00644_v3 Cicer arietinum L. HOM05D007677 ORTHO05D009728 6.7e-61 237.7 150 73.3
VMungo0540G0472 Vigna mungo HOM05D007677 ORTHO05D009728 8.7e-61 237.3 150 75.3
Cc03_g03130 Coffea canephora HOM05D007677 ORTHO05D009728 1.1e-60 236.9 149 73.2
SGA_v2.0_scaffold237G43825 Striga asiatica HOM05D007677 ORTHO05D009728 1.1e-60 236.9 155 72.3
CSS0026660 Camellia sinensis var. sinensis HOM05D007677 ORTHO05D009728 1.5e-60 236.5 149 73.8
Lj6g0003442 Lotus japonicus HOM05D007677 ORTHO05D009728 1.9e-60 236.1 151 72.8
Aqoxy2G03269 Aquilegia oxysepala HOM05D007677 ORTHO05D009728 2.5e-60 235.7 149 73.2
Ca_21594_v3 Cicer arietinum L. HOM05D007677 ORTHO05D009728 3.3e-60 235.3 150 70.7
TPR.G20115 Trifolium pratense HOM05D007677 ORTHO05D009728 4.3e-60 235.0 155 71.0
Oeu037682.1 Olea europaea HOM05D007677 ORTHO05D009728 4.8e-59 231.5 139 76.3
Peaxi162Scf00196g00106 Petunia axillaris HOM05D007677 ORTHO05D009728 1.8e-58 229.6 148 73.6
Psat1g183560 Pisum sativum HOM05D007677 ORTHO05D009728 2.4e-58 229.2 149 71.8
PGSC0003DMG400033121 Solanum tuberosum HOM05D007677 ORTHO05D009728 2.4e-58 229.2 145 71.0
Psat4g031560 Pisum sativum HOM05D007677 ORTHO05D009728 3.1e-58 228.8 155 68.4
Sopen01g031880 Solanum pennellii HOM05D007677 ORTHO05D009728 5.3e-58 228.0 145 72.4
PSO407G0046 Papaver somniferum HOM05D007677 ORTHO05D009728 2.0e-57 226.1 153 71.9
Solyc01g080100.3 Solanum lycopersicum HOM05D007677 ORTHO05D009728 2.6e-57 225.7 145 71.7
PSO170G6325 Papaver somniferum HOM05D007677 ORTHO05D009728 4.5e-57 224.9 153 71.2
TAR633G1088 Trochodendron aralioides HOM05D007677 ORTHO05D009728 9.9e-57 223.8 156 67.9
PGR004G0596 Punica granatum HOM05D007677 ORTHO05D009728 1.3e-56 223.4 140 75.7
CSS0045125 Camellia sinensis var. sinensis HOM05D007677 ORTHO05D009728 3.8e-56 221.9 158 67.1
vmacro08279 Vaccinium macrocarpon HOM05D007677 ORTHO05D009728 3.8e-56 221.9 157 68.2
Lj6P565T22 Lonicera japonica HOM05D007677 ORTHO05D009728 9.3e-55 217.2 148 68.2
Migut.G00291 Erythranthe guttata HOM05D007677 ORTHO05D009728 6.0e-54 214.5 139 73.4
Nitab4.5_0001247g0090 Nicotiana tabacum HOM05D007677 ORTHO05D009728 4.3e-52 208.4 134 73.1
Dinv38394 Davidia involucrata HOM05D007677 ORTHO05D009728 2.6e-49 199.1 135 72.6
CSS0000052 Camellia sinensis var. sinensis HOM05D007677 ORTHO05D009728 3.4e-49 198.7 148 65.5
Sc13g0003990 Simmondsia chinensis HOM05D007677 ORTHO05D009728 8.4e-48 194.1 140 65.0
AUR62030087 Chenopodium quinoa HOM05D007677 ORTHO05D007693 1.6e-46 189.9 131 68.7
THA.LOC104820106 Tarenaya hassleriana HOM05D001407 ORTHO05D001314 1.5e-44 183.3 159 57.9
TAR362G0152 Trochodendron aralioides HOM05D007677 ORTHO05D009728 2.5e-44 182.6 112 74.1
AL3G17000 Arabidopsis lyrata HOM05D007677 ORTHO05D009728 8.5e-40 167.5 138 59.4
BcaNung06667 Brassica carinata HOM05D007677 ORTHO05D009728 1.9e-39 166.4 152 55.3
BcaC05g30051 Brassica carinata HOM05D007677 ORTHO05D009728 2.5e-39 166.0 138 58.7
AT3G06145 Arabidopsis thaliana HOM05D007677 ORTHO05D009728 4.2e-39 165.2 138 58.0
A05p41840 Brassica napus HOM05D007677 ORTHO05D009728 5.5e-39 164.9 138 58.0
BraA05t22903Z Brassica rapa HOM05D007677 ORTHO05D009728 5.5e-39 164.9 138 58.0
Thhalv10021653m.g Eutrema salsugineum HOM05D007677 ORTHO05D009728 7.2e-39 164.5 138 58.0
C05p61090 Brassica napus HOM05D007677 ORTHO05D009728 9.3e-39 164.1 138 58.0
BolC5t34766H Brassica oleracea HOM05D007677 ORTHO05D009728 9.3e-39 164.1 138 58.0
Carub.0003s0558 Capsella rubella HOM05D007677 ORTHO05D009728 1.6e-38 163.3 138 57.2
Sp3g05100 Schrenkiella parvula HOM05D007677 ORTHO05D009728 1.6e-38 163.3 152 54.6
CARHR080660 Cardamine hirsuta HOM05D007677 ORTHO05D009728 1.0e-37 160.6 138 57.2
Aa31LG5G16660 Aethionema arabicum HOM05D007677 ORTHO05D009728 1.1e-36 157.1 165 49.7
ATR0626G325 Amborella trichopoda HOM05D007677 ORTHO05D009728 2.8e-35 152.5 137 54.7
SHI00378 Sapria himalayana HOM05D007677 ORTHO05D009728 8.2e-35 151.0 166 47.6
Atru.chr4.2568 Acer truncatum HOM05D007677 ORTHO05D009728 1.5e-33 146.7 80 88.8
SEGI_19260 Sequoiadendron giganteum HOM05D007677 ORTHO05D009728 1.9e-31 139.8 127 53.5
Potri.010G030701 Populus trichocarpa HOM05D007677 ORTHO05D009728 7.9e-30 134.4 96 69.8
Lsat_1_v5_gn_7_41320 Lactuca sativa HOM05D007677 ORTHO05D009728 2.6e-25 119.4 74 73.0
MBI17_g34455_MAGBIO Magnolia biondii HOM05D002055 ORTHO05D002120 3.9e-21 105.5 62 74.2
EL10Ac3g06358 Beta vulgaris HOM05D007677 ORTHO05D009728 3.3e-20 102.4 71 73.2
SEGI_22306 Sequoiadendron giganteum HOM05D007677 ORTHO05D009728 4.5e-17 92.0 119 42.0
SEGI_22697 Sequoiadendron giganteum HOM05D007677 ORTHO05D009728 8.5e-16 87.8 119 40.3


User provided reference genes

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