Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p003820 Quercus lobata HOM05D008417 ORTHO05D010741 3.0e-122 441.8 217 100.0
QL04p086741 Quercus lobata HOM05D008417 ORTHO05D010741 4.6e-30 135.6 117 54.7
QL04p086924 Quercus lobata HOM05D008417 ORTHO05D010741 4.6e-30 135.6 117 54.7
QL05p031699 Quercus lobata HOM05D002097 ORTHO05D002248 9.1e-18 94.7 99 49.5
QL01p046212 Quercus lobata HOM05D008417 ORTHO05D010741 1.1e-15 87.8 109 40.4
QL02p095363 Quercus lobata HOM05D008417 ORTHO05D010741 2.5e-15 86.7 109 40.4
QL05p009220 Quercus lobata HOM05D008417 ORTHO05D010741 2.5e-15 86.7 104 40.4
QL06p036222 Quercus lobata HOM05D008417 ORTHO05D010741 5.5e-15 85.5 109 39.4
MD13G1185400 Malus domestica HOM05D000043 ORTHO05D001371 3.6e-14 82.8 70 60.0
QL11p016914 Quercus lobata HOM05D008417 ORTHO05D010741 1.0e-13 81.3 103 39.8
GSVIVG01017904001 Vitis vinifera HOM05D000043 ORTHO05D001371 1.0e-13 81.3 70 57.1
Cfa015599 Carpinus fangiana HOM05D000043 ORTHO05D001371 1.4e-13 80.9 72 59.7
Haze_00945 Corylus avellana HOM05D004849 ORTHO05D005955 1.4e-13 80.9 72 59.7
QL03p059859 Quercus lobata HOM05D000003 ORTHO05D010741 1.4e-13 80.9 108 39.8
Prupe.1G153100 Prunus persica HOM05D000043 ORTHO05D001371 3.0e-13 79.7 71 60.6
QL01p037305 Quercus lobata HOM05D008417 ORTHO05D010741 3.0e-13 79.7 80 45.0
QL06p036576 Quercus lobata HOM05D000003 ORTHO05D000004 5.1e-13 79.0 108 39.8
QL09p047229 Quercus lobata HOM05D008417 ORTHO05D010741 6.7e-13 78.6 106 35.8
QL09p021330 Quercus lobata HOM05D008417 ORTHO05D010741 1.5e-12 77.4 108 36.1
RcHm_v2.0_Chr4g0417821 Rosa chinensis HOM05D000043 ORTHO05D001371 1.5e-12 77.4 69 60.9
Dinv44491 Davidia involucrata HOM05D000043 ORTHO05D001371 3.3e-12 76.3 70 52.9
QL05p055405 Quercus lobata HOM05D000148 ORTHO05D000081 3.3e-12 76.3 106 34.9
CiPaw.01G161300 Carya illinoinensis HOM05D000043 ORTHO05D001371 4.4e-12 75.9 70 55.7
FvH4_4g14780 Fragaria vesca HOM05D000043 ORTHO05D001371 4.4e-12 75.9 70 55.7
FAN12G3061 Fragaria x ananassa HOM05D000043 ORTHO05D001371 4.4e-12 75.9 70 55.7
QL04p013586 Quercus lobata HOM05D008417 ORTHO05D010741 5.7e-12 75.5 119 31.9
QL06p003798 Quercus lobata HOM05D000043 ORTHO05D001371 7.4e-12 75.1 88 50.0
FAN07G1248 Fragaria x ananassa HOM05D004849 ORTHO05D005955 1.7e-11 73.9 70 54.3
FAN22G0535 Fragaria x ananassa HOM05D000043 ORTHO05D001371 1.7e-11 73.9 70 54.3
QL06p046348 Quercus lobata HOM05D000003 ORTHO05D000004 2.2e-11 73.6 103 36.9
MD16G1186300 Malus domestica HOM05D000043 ORTHO05D001371 4.8e-11 72.4 70 55.7
QL04p086684 Quercus lobata HOM05D008417 ORTHO05D010741 4.8e-11 72.4 125 33.6
QL04p019975 Quercus lobata HOM05D008417 ORTHO05D010741 6.3e-11 72.0 103 36.9
Thecc.04G224500 Theobroma cacao HOM05D000043 ORTHO05D001371 1.1e-10 71.2 70 51.4
COL.COLO4_26628 Corchorus olitorius HOM05D000043 ORTHO05D001371 2.4e-10 70.1 70 50.0
QL04p004279 Quercus lobata HOM05D008417 ORTHO05D010741 3.1e-10 69.7 122 28.7
QL05p010241 Quercus lobata HOM05D008417 ORTHO05D010741 5.3e-10 68.9 99 34.3
QL02p078700 Quercus lobata HOM05D008417 ORTHO05D010741 9.1e-10 68.2 109 31.2
QL04p073059 Quercus lobata HOM05D002031 ORTHO05D010741 9.1e-10 68.2 118 28.0
TWI09G0454 Tripterygium wilfordii HOM05D000043 ORTHO05D001371 9.1e-10 68.2 70 48.6
TAR633G1612 Trochodendron aralioides HOM05D000043 ORTHO05D001371 9.1e-10 68.2 77 45.5
QL02p071008 Quercus lobata HOM05D005517 ORTHO05D006760 1.2e-09 67.8 110 34.5
QL03p019159 Quercus lobata HOM05D008417 ORTHO05D010741 1.2e-09 67.8 84 41.7
Actinidia36989 Actinidia chinensis HOM05D000043 ORTHO05D001371 4.5e-09 65.9 70 47.1
QL06p003742 Quercus lobata HOM05D008417 ORTHO05D000004 5.9e-09 65.5 111 27.9
Hma1.2p1_0995F.1_g245800 Hydrangea macrophylla HOM05D000043 ORTHO05D001371 1.3e-08 64.3 73 47.9
CSS0048132 Camellia sinensis var. sinensis HOM05D000043 ORTHO05D001371 2.2e-08 63.5 70 47.1
Manes.15G024500 Manihot esculenta HOM05D000043 ORTHO05D001371 2.2e-08 63.5 73 46.6
QL05p032702 Quercus lobata HOM05D008417 ORTHO05D010741 2.2e-08 63.5 59 45.8
FAN17G1704 Fragaria x ananassa HOM05D000043 ORTHO05D001371 6.5e-08 62.0 57 54.4
ClCG06G005860 Citrullus lanatus HOM05D000043 ORTHO05D001371 8.5e-08 61.6 70 48.6
Ciclev10004949m.g Citrus clementina HOM05D000043 ORTHO05D001371 1.4e-07 60.8 69 47.8
CANSAT78G1985 Cannabis sativa HOM05D000043 ORTHO05D001371 1.9e-07 60.5 70 48.6
PGR142G2405 Punica granatum HOM05D000043 ORTHO05D001371 1.9e-07 60.5 74 45.9
Lj6g0022734 Lotus japonicus HOM05D000043 ORTHO05D001371 2.5e-07 60.1 78 44.9
VMungo1215G0267 Vigna mungo HOM05D000043 ORTHO05D001371 3.2e-07 59.7 77 42.9
CsaV3_6G015130 Cucumis sativus L. HOM05D000043 ORTHO05D001371 4.2e-07 59.3 70 45.7
QL04p073740 Quercus lobata HOM05D000053 ORTHO05D000035 4.2e-07 59.3 71 45.1
QL04p021333 Quercus lobata HOM05D003977 ORTHO05D004536 5.5e-07 58.9 132 25.8
vmacro15317 Vaccinium macrocarpon HOM05D000043 ORTHO05D001371 5.5e-07 58.9 75 40.0
MELO3C021408.2 Cucumis melo HOM05D000043 ORTHO05D001371 7.2e-07 58.5 70 47.1
Hund12177 Selenicereus undatus HOM05D000043 ORTHO05D001371 9.4e-07 58.2 73 49.3
Dinv38406 Davidia involucrata HOM05D000043 ORTHO05D001371 1.2e-06 57.8 70 45.7
Potri.008G203900 Populus trichocarpa HOM05D000043 ORTHO05D001371 1.2e-06 57.8 73 46.6
QL02p059646 Quercus lobata HOM05D008417 ORTHO05D010741 1.2e-06 57.8 124 29.0
QL03p072831 Quercus lobata HOM05D000003 ORTHO05D000004 1.2e-06 57.8 105 28.6
QL06p003429 Quercus lobata HOM05D000130 ORTHO05D000257 1.2e-06 57.8 84 35.7
CSS0047182 Camellia sinensis var. sinensis HOM05D000043 ORTHO05D001371 1.6e-06 57.4 71 42.3
Gohir.A02G029400 Gossypium hirsutum HOM05D000043 ORTHO05D001371 2.1e-06 57.0 70 47.1
Nn1g02185 Nelumbo nucifera HOM05D000043 ORTHO05D001371 2.1e-06 57.0 76 43.4
TWI73G0204 Tripterygium wilfordii HOM05D000043 ORTHO05D001371 2.1e-06 57.0 70 45.7
Gohir.D02G037200 Gossypium hirsutum HOM05D000043 ORTHO05D001371 2.7e-06 56.6 70 47.1
Manes.03G182900 Manihot esculenta HOM05D000043 ORTHO05D001371 2.7e-06 56.6 75 44.0
QL10p025882 Quercus lobata HOM05D008417 ORTHO05D010741 2.7e-06 56.6 60 45.0
Glyma.17G016100 Glycine max HOM05D000043 ORTHO05D001371 3.6e-06 56.2 67 44.8
Gorai.005G041100 Gossypium raimondii HOM05D000043 ORTHO05D001371 3.6e-06 56.2 70 47.1
QL06p003833 Quercus lobata HOM05D000043 ORTHO05D001371 3.6e-06 56.2 77 44.2
QL06p008495 Quercus lobata HOM05D008417 ORTHO05D010741 3.6e-06 56.2 108 23.1
HanXRQChr10g0311121 Helianthus annuus HOM05D000043 ORTHO05D001371 6.1e-06 55.5 57 50.9
QL06p041640 Quercus lobata HOM05D008417 ORTHO05D010741 7.9e-06 55.1 85 44.7
THA.LOC104822308 Tarenaya hassleriana HOM05D000043 ORTHO05D001371 7.9e-06 55.1 71 43.7


User provided reference genes

Program Settings