Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p003419 Quercus lobata HOM05D008806 ORTHO05D003654 1.1e-111 406.8 215 100.0
QL08p028006 Quercus lobata HOM05D008806 ORTHO05D003654 6.5e-85 317.8 217 81.6
CiPaw.03G281200 Carya illinoinensis HOM05D005871 ORTHO05D003654 4.0e-42 175.6 225 55.1
Cfa014230 Carpinus fangiana HOM05D008806 ORTHO05D003654 3.2e-39 166.0 211 55.5
Haze_12634 Corylus avellana HOM05D008806 ORTHO05D003654 5.4e-39 165.2 205 56.6
Prupe.3G198500 Prunus persica HOM05D008806 ORTHO05D003654 1.8e-26 123.6 225 43.6
Ciclev10016749m.g Citrus clementina HOM05D008806 ORTHO05D003654 5.8e-25 118.6 209 40.7
FAN02G3820 Fragaria x ananassa HOM05D005871 ORTHO05D003654 9.9e-25 117.9 197 41.6
FvH4_6g40700 Fragaria vesca HOM05D008806 ORTHO05D003654 3.8e-24 115.9 201 41.8
FAN05G0544 Fragaria x ananassa HOM05D008806 ORTHO05D003654 1.7e-21 107.1 158 42.4
FAN09G0572 Fragaria x ananassa HOM05D008806 ORTHO05D003654 1.1e-20 104.4 158 41.8
Cfa017914 Carpinus fangiana HOM05D000074 ORTHO05D000220 4.3e-20 102.4 117 61.5
TAR626G0615 Trochodendron aralioides HOM05D005871 ORTHO05D003654 4.3e-20 102.4 188 43.6
Nn1g03208 Nelumbo nucifera HOM05D005871 ORTHO05D003654 7.3e-20 101.7 225 36.9
Gorai.004G033400 Gossypium raimondii HOM05D005871 ORTHO05D003654 6.2e-19 98.6 222 36.5
Gohir.D08G035400 Gossypium hirsutum HOM05D005871 ORTHO05D003654 8.1e-19 98.2 220 38.2
Potri.014G166900 Populus trichocarpa HOM05D008806 ORTHO05D003654 3.1e-18 96.3 201 38.8
Duzib138G0120 Durio zibethinus HOM05D008806 ORTHO05D003654 4.0e-18 95.9 219 35.2
Thecc.01G195400 Theobroma cacao HOM05D008806 ORTHO05D003654 4.0e-18 95.9 214 35.5
COL.COLO4_09813 Corchorus olitorius HOM05D005871 ORTHO05D003654 5.3e-18 95.5 240 35.0
Dinv26612 Davidia involucrata HOM05D008806 ORTHO05D003654 1.2e-17 94.4 147 43.5
FAN14G2730 Fragaria x ananassa HOM05D008806 ORTHO05D003654 1.5e-17 94.0 166 39.2
Nn1g07488 Nelumbo nucifera HOM05D005871 ORTHO05D003654 1.5e-17 94.0 194 36.6
Atru.chr6.3383_Atru.chr6.3384 Acer truncatum HOM05D008806 ORTHO05D003654 2.0e-17 93.6 217 35.0
Gohir.A04G006400 Gossypium hirsutum HOM05D005871 ORTHO05D003654 7.6e-17 91.7 227 35.7
Duzib170G1062 Durio zibethinus HOM05D005871 ORTHO05D003654 9.9e-17 91.3 229 38.0
Manes.12G064700 Manihot esculenta HOM05D008806 ORTHO05D003654 2.9e-16 89.7 205 38.0
Sed0022932 Sechium edule HOM05D008806 ORTHO05D003654 3.8e-16 89.4 182 36.3
Gohir.A08G024900 Gossypium hirsutum HOM05D005871 ORTHO05D003654 4.9e-16 89.0 220 35.9
Gohir.A07G191600 Gossypium hirsutum HOM05D008806 ORTHO05D003654 1.9e-15 87.0 187 36.4
Haze_09808 Corylus avellana HOM05D005871 ORTHO05D003654 2.4e-15 86.7 204 40.2
Thecc.07G015800 Theobroma cacao HOM05D005871 ORTHO05D003654 4.2e-15 85.9 263 35.4
Duzib133G1309 Durio zibethinus HOM05D008806 ORTHO05D003654 5.4e-15 85.5 210 34.8
Gohir.A07G191701 Gossypium hirsutum HOM05D008806 ORTHO05D003654 5.4e-15 85.5 180 37.8
Gohir.D07G197900 Gossypium hirsutum HOM05D008806 ORTHO05D003654 5.4e-15 85.5 215 34.0
Gohir.D05G383000 Gossypium hirsutum HOM05D005871 ORTHO05D003654 1.2e-14 84.3 227 36.6
Gohir.D07G198000 Gossypium hirsutum HOM05D008806 ORTHO05D003654 1.6e-14 84.0 183 36.1
Gorai.001G221600 Gossypium raimondii HOM05D008806 ORTHO05D003654 1.6e-14 84.0 183 36.1
Gorai.009G449600 Gossypium raimondii HOM05D005871 ORTHO05D003654 1.6e-14 84.0 238 32.8
Cfa020208 Carpinus fangiana HOM05D005871 ORTHO05D003654 2.1e-14 83.6 209 39.7
Gorai.001G221500 Gossypium raimondii HOM05D008806 ORTHO05D003654 2.1e-14 83.6 215 34.9
Nitab4.5_0001701g0160 Nicotiana tabacum HOM05D016037 ORTHO05D003654 3.5e-14 82.8 185 35.7
Gohir.D05G383100 Gossypium hirsutum HOM05D005871 ORTHO05D003654 6.0e-14 82.0 242 31.8
Gorai.009G449400 Gossypium raimondii HOM05D005871 ORTHO05D003654 1.0e-13 81.3 210 34.8
TWI39G0465 Tripterygium wilfordii HOM05D005871 ORTHO05D003654 3.0e-13 79.7 227 32.2
Rhsim06G0176100 Rhododendron simsii HOM05D008806 ORTHO05D003654 3.9e-13 79.3 225 32.9
TWI36G1583 Tripterygium wilfordii HOM05D008806 ORTHO05D003654 3.9e-13 79.3 189 37.6
Glyma.02G299500 Glycine max HOM05D005871 ORTHO05D003654 5.1e-13 79.0 238 32.8
Gohir.D05G382900 Gossypium hirsutum HOM05D005871 ORTHO05D003654 6.7e-13 78.6 213 34.7
Sabra14G0126900 Salix brachista HOM05D008806 ORTHO05D003654 8.7e-13 78.2 179 38.0
MD03G1184900 Malus domestica HOM05D005871 ORTHO05D003654 4.3e-12 75.9 240 33.8
TWI38G0819 Tripterygium wilfordii HOM05D005871 ORTHO05D003654 5.6e-12 75.5 221 33.0
Lj6g0021470 Lotus japonicus HOM05D005871 ORTHO05D003654 7.4e-12 75.1 244 32.4
LjContig00081g0024091 Lotus japonicus HOM05D014380 ORTHO05D017040 9.6e-12 74.7 185 34.1
Manes.13G062200 Manihot esculenta HOM05D008806 ORTHO05D003654 9.6e-12 74.7 177 36.2
CiPaw.11G202600 Carya illinoinensis HOM05D005871 ORTHO05D003654 1.3e-11 74.3 198 33.3
Glyma.18G078200 Glycine max HOM05D005871 ORTHO05D003654 1.3e-11 74.3 267 33.3
Sed0025236 Sechium edule HOM05D008806 ORTHO05D003654 1.3e-11 74.3 186 34.9
PGSC0003DMG400017373 Solanum tuberosum HOM05D016037 ORTHO05D003654 1.3e-11 74.3 206 32.5
Phvul.008G278200 Phaseolus vulgaris HOM05D005871 ORTHO05D003654 2.1e-11 73.6 238 32.4
VMungo0647G1579 Vigna mungo HOM05D005871 ORTHO05D003654 2.1e-11 73.6 246 32.1
ClCG02G002830 Citrullus lanatus HOM05D008806 ORTHO05D003654 4.8e-11 72.4 191 36.1
Gohir.D05G382950 Gossypium hirsutum HOM05D005871 ORTHO05D003654 4.8e-11 72.4 190 36.3
Hma1.2p1_0657F.1_g196840 Hydrangea macrophylla HOM05D005871 ORTHO05D003654 4.8e-11 72.4 244 30.7
Manes.15G061300 Manihot esculenta HOM05D005871 ORTHO05D003654 4.8e-11 72.4 201 31.8
Manes.03G140301 Manihot esculenta HOM05D005871 ORTHO05D003654 6.2e-11 72.0 260 30.8
TPR.G35473 Trifolium pratense HOM05D005871 ORTHO05D003654 6.2e-11 72.0 196 34.2
Manes.03G140300 Manihot esculenta HOM05D005871 ORTHO05D003654 8.1e-11 71.6 254 32.7
THA.LOC104810289 Tarenaya hassleriana HOM05D010616 ORTHO05D003654 8.1e-11 71.6 193 30.6
Psat0s4683g0040 Pisum sativum HOM05D005871 ORTHO05D003654 1.1e-10 71.2 233 29.6
QL08p004709 Quercus lobata HOM05D005871 ORTHO05D003654 1.1e-10 71.2 224 33.0
Eucgr.F02056 Eucalyptus grandis HOM05D005871 ORTHO05D003654 1.4e-10 70.9 246 28.9
Peaxi162Scf00802g10028 Petunia axillaris HOM05D016037 ORTHO05D003654 1.4e-10 70.9 195 30.8
AL3G42140 Arabidopsis lyrata HOM05D011557 ORTHO05D013745 1.8e-10 70.5 198 31.3
Lalb_Chr04g0247911 Lupinus albus HOM05D005871 ORTHO05D003654 1.8e-10 70.5 240 32.1
Lj6g0021132 Lotus japonicus HOM05D005871 ORTHO05D003654 2.4e-10 70.1 246 30.5
CiPaw.12G137100 Carya illinoinensis HOM05D005871 ORTHO05D003654 3.1e-10 69.7 227 33.0
Glyma.08G328600 Glycine max HOM05D005871 ORTHO05D003654 3.1e-10 69.7 272 30.9
Gorai.009G449500 Gossypium raimondii HOM05D005871 ORTHO05D003654 3.1e-10 69.7 190 35.8
Ah.09g234010 Amaranthus hybridus HOM05D005871 ORTHO05D003654 4.0e-10 69.3 206 35.0
Phvul.006G056300 Phaseolus vulgaris HOM05D005871 ORTHO05D003654 4.0e-10 69.3 230 33.5
Glyma.14G014200 Glycine max HOM05D005871 ORTHO05D003654 5.3e-10 68.9 245 31.8
CANSAT64G0243 Cannabis sativa HOM05D008806 ORTHO05D003654 6.9e-10 68.6 199 33.2
Thhalv10021559m.g Eutrema salsugineum HOM05D010616 ORTHO05D003654 6.9e-10 68.6 189 28.6
SalBow7G0966 Salvia bowleyana HOM05D005871 ORTHO05D003654 1.2e-09 67.8 183 35.0
TPR.G8596 Trifolium pratense HOM05D005871 ORTHO05D003654 1.2e-09 67.8 225 28.4
Prupe.4G241600 Prunus persica HOM05D005871 ORTHO05D003654 1.5e-09 67.4 237 32.5
PGR083G2866 Punica granatum HOM05D005871 ORTHO05D003654 1.5e-09 67.4 236 30.5
VMungo0540G2170 Vigna mungo HOM05D005871 ORTHO05D003654 2.0e-09 67.0 239 32.6
MELO3C028684.2 Cucumis melo HOM05D008806 ORTHO05D003654 2.6e-09 66.6 191 33.0
Actinidia02292 Actinidia chinensis HOM05D005871 ORTHO05D003654 3.4e-09 66.2 223 31.4
Migut.M00045 Erythranthe guttata HOM05D005871 ORTHO05D003654 4.5e-09 65.9 199 28.6
Solyc07g045530.2 Solanum lycopersicum HOM05D016037 ORTHO05D003654 4.5e-09 65.9 196 27.6
TPR.G8607 Trifolium pratense HOM05D005871 ORTHO05D003654 4.5e-09 65.9 235 30.2
A05p36410 Brassica napus HOM05D010616 ORTHO05D003654 7.6e-09 65.1 190 29.5
CsaV3_7G015020 Cucumis sativus L. HOM05D005871 ORTHO05D003654 9.9e-09 64.7 188 34.0
Sp3g11300 Schrenkiella parvula HOM05D010616 ORTHO05D003654 9.9e-09 64.7 185 29.7
TAR629G1912 Trochodendron aralioides HOM05D005871 ORTHO05D003654 9.9e-09 64.7 208 35.6
Potri.001G366500 Populus trichocarpa HOM05D005871 ORTHO05D003654 1.3e-08 64.3 264 28.8
Sed0014857 Sechium edule HOM05D005871 ORTHO05D003654 1.3e-08 64.3 240 31.7
AT2G04515 Arabidopsis thaliana HOM05D011557 ORTHO05D013745 1.7e-08 63.9 197 31.0
BcaC05g29208 Brassica carinata HOM05D010616 ORTHO05D003654 1.7e-08 63.9 185 30.3
C05p54810 Brassica napus HOM05D010616 ORTHO05D003654 1.7e-08 63.9 185 30.3
BolC5t34153H Brassica oleracea HOM05D010616 ORTHO05D003654 1.7e-08 63.9 185 30.3
PSO675G2590 Papaver somniferum HOM05D063809 ORTHO05D003654 1.7e-08 63.9 216 31.9
Phvul.008G289200 Phaseolus vulgaris HOM05D014380 ORTHO05D017040 2.9e-08 63.2 182 30.2
COL.COLO4_33339 Corchorus olitorius HOM05D008806 ORTHO05D003654 3.8e-08 62.8 154 32.5
TAR629G2179 Trochodendron aralioides HOM05D005871 ORTHO05D003654 3.8e-08 62.8 142 41.5
AT3G13130 Arabidopsis thaliana HOM05D010616 ORTHO05D003654 4.9e-08 62.4 188 28.2
BraA05t22441Z Brassica rapa HOM05D010616 ORTHO05D003654 8.4e-08 61.6 190 28.4
Rhsim06G0176000 Rhododendron simsii HOM05D005871 ORTHO05D003654 8.4e-08 61.6 225 30.2
BcaB06g25485 Brassica carinata HOM05D010616 ORTHO05D003654 1.1e-07 61.2 183 29.5
Cpa.g.sc12.163 Carica papaya HOM05D005871 ORTHO05D003654 1.1e-07 61.2 229 30.1
TPR.G10004 Trifolium pratense HOM05D005871 ORTHO05D003654 1.1e-07 61.2 197 27.4
AT2G04495 Arabidopsis thaliana HOM05D011557 ORTHO05D013745 1.4e-07 60.8 208 31.7
Sc16g0008000 Simmondsia chinensis HOM05D005871 ORTHO05D003654 1.9e-07 60.5 242 27.7
ClCG09G021220 Citrullus lanatus HOM05D005871 ORTHO05D003654 2.4e-07 60.1 139 34.5
PGR083G1770 Punica granatum HOM05D008806 ORTHO05D003654 2.4e-07 60.1 201 31.8
Lalb_Chr18g0057151 Lupinus albus HOM05D005871 ORTHO05D003654 3.2e-07 59.7 208 30.3
Eucgr.F02055 Eucalyptus grandis HOM05D005871 ORTHO05D003654 4.2e-07 59.3 225 27.6
Medtr5g095630 Medicago truncatula HOM05D005871 ORTHO05D003654 7.1e-07 58.5 225 28.0
Sp3g23290 Schrenkiella parvula HOM05D011557 ORTHO05D013745 7.1e-07 58.5 195 33.3
Gohir.D06G162300 Gossypium hirsutum HOM05D005871 ORTHO05D003654 9.3e-07 58.2 190 28.4
THA.LOC104822734 Tarenaya hassleriana HOM05D010616 ORTHO05D003654 1.2e-06 57.8 207 26.6
Aqoxy1G04240 Aquilegia oxysepala HOM05D005871 ORTHO05D003654 1.6e-06 57.4 206 29.6
BcaNung05271 Brassica carinata HOM05D010616 ORTHO05D003654 1.6e-06 57.4 189 30.2
Glyma.02G309000 Glycine max HOM05D014380 ORTHO05D017040 1.6e-06 57.4 174 32.2
CAN.G337.14 Capsicum annuum HOM05D033747 ORTHO05D033984 2.1e-06 57.0 228 23.2
Dinv21293 Davidia involucrata HOM05D050188 ORTHO05D003654 2.1e-06 57.0 114 42.1
MD00G1057200 Malus domestica HOM05D005871 ORTHO05D003654 2.7e-06 56.6 232 27.6
Psat1g173400 Pisum sativum HOM05D005871 ORTHO05D003654 2.7e-06 56.6 190 25.3
MSTRG.6638 Avicennia marina HOM05D016037 ORTHO05D003654 3.5e-06 56.2 202 30.2
SalBow1G1270 Salvia bowleyana HOM05D005871 ORTHO05D003654 3.5e-06 56.2 203 31.0
Sc06g0009900 Simmondsia chinensis HOM05D008806 ORTHO05D003654 3.5e-06 56.2 179 29.1
QL05p068166 Quercus lobata HOM05D005871 ORTHO05D003654 4.6e-06 55.8 193 29.5
Gorai.010G189400 Gossypium raimondii HOM05D005871 ORTHO05D003654 6.0e-06 55.5 223 27.4
SHI10155 Sapria himalayana HOM05D008806 ORTHO05D003654 6.0e-06 55.5 143 35.0
Dinv15362 Davidia involucrata HOM05D005871 ORTHO05D003654 7.9e-06 55.1 158 31.0
Thhalv10003003m.g Eutrema salsugineum HOM05D011557 ORTHO05D013745 7.9e-06 55.1 203 28.1
Medtr2g026565 Medicago truncatula HOM05D005871 ORTHO05D003654 7.9e-06 55.1 205 26.3
Psat2g008040 Pisum sativum HOM05D005871 ORTHO05D003654 7.9e-06 55.1 239 26.4


User provided reference genes

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