Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p000522 Quercus lobata HOM05D002369 ORTHO05D002435 1.7e-30 135.6 78 100.0
Prupe.1G024000 Prunus persica HOM05D002369 ORTHO05D002435 3.7e-22 107.8 78 78.2
Lj5g0000230 Lotus japonicus HOM05D002369 ORTHO05D002435 6.3e-22 107.1 76 78.9
CANSAT78G0524 Cannabis sativa HOM05D002369 ORTHO05D002435 1.1e-21 106.3 78 75.6
CiPaw.01G193600 Carya illinoinensis HOM05D002369 ORTHO05D002435 1.8e-21 105.5 84 76.2
TWI09G0544 Tripterygium wilfordii HOM05D002369 ORTHO05D002435 2.4e-21 105.1 78 79.5
TWI53G0837 Tripterygium wilfordii HOM05D002369 ORTHO05D002435 4.1e-21 104.4 78 78.2
Thecc.04G241600 Theobroma cacao HOM05D002369 ORTHO05D002435 1.2e-20 102.8 79 77.2
Phvul.007G111000 Phaseolus vulgaris HOM05D002369 ORTHO05D002435 1.6e-20 102.4 76 77.6
Glyma.20G211400 Glycine max HOM05D002369 ORTHO05D002435 2.0e-20 102.1 76 76.3
Lj5g0017731 Lotus japonicus HOM05D002369 ORTHO05D002435 2.7e-20 101.7 76 73.7
arahy.Tifrunner.gnm1.ann1.D98VB5 Arachis hypogaea HOM05D002369 ORTHO05D002435 4.5e-20 100.9 76 75.0
Glyma.10G178700 Glycine max HOM05D002369 ORTHO05D002435 5.9e-20 100.5 76 76.3
RcHm_v2.0_Chr4g0388841 Rosa chinensis HOM05D002369 ORTHO05D002435 7.7e-20 100.1 80 75.0
MD16G1202400 Malus domestica HOM05D002369 ORTHO05D002435 1.3e-19 99.4 78 71.8
Duzib212G0042 Durio zibethinus HOM05D002369 ORTHO05D002435 2.9e-19 98.2 79 74.7
MD13G1202200 Malus domestica HOM05D002369 ORTHO05D002435 2.9e-19 98.2 78 70.5
Atru.chr4.2318 Acer truncatum HOM05D002369 ORTHO05D002435 8.6e-19 96.7 78 73.1
ClCG06G006560 Citrullus lanatus HOM05D002369 ORTHO05D002435 8.6e-19 96.7 74 77.0
FAN17G0856 Fragaria x ananassa HOM05D002369 ORTHO05D002435 1.5e-18 95.9 81 72.8
FAN22G2026 Fragaria x ananassa HOM05D002369 ORTHO05D002435 1.5e-18 95.9 81 72.8
Manes.03G171400 Manihot esculenta HOM05D002369 ORTHO05D002435 1.5e-18 95.9 79 72.2
FvH4_4g01800 Fragaria vesca HOM05D002369 ORTHO05D002435 1.9e-18 95.5 81 72.8
Sed0012249 Sechium edule HOM05D002369 ORTHO05D002435 1.9e-18 95.5 74 77.0
FAN12G3469 Fragaria x ananassa HOM05D002369 ORTHO05D002435 2.5e-18 95.1 79 74.7
CsaV3_2G013330 Cucumis sativus L. HOM05D002369 ORTHO05D002435 3.3e-18 94.7 74 75.7
Gorai.011G167000 Gossypium raimondii HOM05D002369 ORTHO05D002435 3.3e-18 94.7 77 72.7
Sabra15G0152500 Salix brachista HOM05D002369 ORTHO05D002435 3.3e-18 94.7 83 68.7
Manes.15G034200 Manihot esculenta HOM05D002369 ORTHO05D002435 4.2e-18 94.4 79 70.9
Potri.015G142500 Populus trichocarpa HOM05D002369 ORTHO05D002435 7.2e-18 93.6 82 68.3
Duzib052G0941 Durio zibethinus HOM05D002369 ORTHO05D002435 1.2e-17 92.8 79 72.2
Gohir.D10G150000 Gossypium hirsutum HOM05D002369 ORTHO05D002435 1.2e-17 92.8 79 69.6
Cc03_g04470 Coffea canephora HOM05D002369 ORTHO05D002435 3.6e-17 91.3 76 75.0
arahy.Tifrunner.gnm1.ann1.YZC8KD Arachis hypogaea HOM05D002369 ORTHO05D002435 6.1e-17 90.5 88 63.6
Gohir.A10G117266 Gossypium hirsutum HOM05D002369 ORTHO05D002435 6.1e-17 90.5 79 69.6
Lalb_Chr19g0127861 Lupinus albus HOM05D002369 ORTHO05D002435 1.0e-16 89.7 78 70.5
Psat6g114080 Pisum sativum HOM05D002369 ORTHO05D002435 1.0e-16 89.7 78 66.7
Medtr1g076580 Medicago truncatula HOM05D002369 ORTHO05D002435 1.4e-16 89.4 79 68.4
TPR.G22810 Trifolium pratense HOM05D002369 ORTHO05D002435 1.4e-16 89.4 78 66.7
GSVIVG01018076001 Vitis vinifera HOM05D002369 ORTHO05D002435 1.4e-16 89.4 78 67.9
Dinv44599 Davidia involucrata HOM05D002369 ORTHO05D002435 3.0e-16 88.2 77 72.7
Gohir.D09G222900 Gossypium hirsutum HOM05D002369 ORTHO05D002435 4.0e-16 87.8 78 70.5
Gorai.006G244200 Gossypium raimondii HOM05D002369 ORTHO05D002435 4.0e-16 87.8 78 70.5
Gohir.A09G220600 Gossypium hirsutum HOM05D002369 ORTHO05D002435 5.2e-16 87.4 56 85.7
Ciclev10006282m.g Citrus clementina HOM05D002369 ORTHO05D002435 8.9e-16 86.7 79 68.4
PGSC0003DMG400006078 Solanum tuberosum HOM05D002369 ORTHO05D002435 8.9e-16 86.7 70 74.3
Solyc09g082940.3 Solanum lycopersicum HOM05D002369 ORTHO05D002435 1.2e-15 86.3 70 72.9
Sopen09g031810 Solanum pennellii HOM05D002369 ORTHO05D002435 1.2e-15 86.3 70 72.9
AL3G37320 Arabidopsis lyrata HOM05D002369 ORTHO05D002435 2.0e-15 85.5 76 68.4
Aa31LG8G9440 Aethionema arabicum HOM05D002369 ORTHO05D002435 2.6e-15 85.1 76 67.1
Dinv14063 Davidia involucrata HOM05D002369 ORTHO05D002435 2.6e-15 85.1 78 67.9
Medtr1g076640 Medicago truncatula HOM05D002369 ORTHO05D002435 2.6e-15 85.1 79 67.1
Migut.G00406 Erythranthe guttata HOM05D002369 ORTHO05D002435 3.4e-15 84.7 66 72.7
Peaxi162Scf00788g00012 Petunia axillaris HOM05D002369 ORTHO05D002435 3.4e-15 84.7 73 69.9
AT3G22942 Arabidopsis thaliana HOM05D002369 ORTHO05D002435 4.4e-15 84.3 76 67.1
CARHR098880 Cardamine hirsuta HOM05D002369 ORTHO05D002435 4.4e-15 84.3 76 67.1
Lsat_1_v5_gn_3_123940 Lactuca sativa HOM05D002369 ORTHO05D002435 7.5e-15 83.6 67 70.1
BcaC01g03410 Brassica carinata HOM05D002369 ORTHO05D002435 9.8e-15 83.2 76 67.1
A03p43070 Brassica napus HOM05D002369 ORTHO05D002435 9.8e-15 83.2 76 67.1
C03p52860 Brassica napus HOM05D002369 ORTHO05D002435 9.8e-15 83.2 76 67.1
BolC3t17553H Brassica oleracea HOM05D002369 ORTHO05D002435 9.8e-15 83.2 76 67.1
BraA03t13449Z Brassica rapa HOM05D002369 ORTHO05D002435 9.8e-15 83.2 76 67.1
CAN.G749.11 Capsicum annuum HOM05D002369 ORTHO05D002435 9.8e-15 83.2 70 71.4
Oeu043467.1 Olea europaea HOM05D002369 ORTHO05D002435 1.3e-14 82.8 68 72.1
PGR142G4304 Punica granatum HOM05D002369 ORTHO05D002435 1.3e-14 82.8 79 64.6
Actinidia08457 Actinidia chinensis HOM05D002369 ORTHO05D002435 2.2e-14 82.0 56 82.1
Nn1g02504 Nelumbo nucifera HOM05D002369 ORTHO05D002435 2.2e-14 82.0 78 61.5
Oeu002907.1 Olea europaea HOM05D002369 ORTHO05D002435 2.2e-14 82.0 76 67.1
HanXRQChr13g0423531 Helianthus annuus HOM05D002369 ORTHO05D002435 2.9e-14 81.6 67 71.6
C01p41210 Brassica napus HOM05D002369 ORTHO05D002435 3.7e-14 81.3 76 64.5
BolC1t04075H Brassica oleracea HOM05D002369 ORTHO05D002435 3.7e-14 81.3 76 64.5
Eucgr.H03396 Eucalyptus grandis HOM05D002369 ORTHO05D002435 3.7e-14 81.3 78 64.1
Sp3g20630 Schrenkiella parvula HOM05D002369 ORTHO05D002435 3.7e-14 81.3 76 63.2
SGA_v2.0_scaffold308G48116 Striga asiatica HOM05D000211 ORTHO05D002517 3.7e-14 81.3 78 64.1
Carub.0003s2307 Capsella rubella HOM05D002369 ORTHO05D002435 4.9e-14 80.9 76 63.2
ClCG05G004760 Citrullus lanatus HOM05D002369 ORTHO05D002435 4.9e-14 80.9 71 66.2
Nitab4.5_0000941g0110 Nicotiana tabacum HOM05D002369 ORTHO05D002435 4.9e-14 80.9 78 66.7
BcaB03g14641 Brassica carinata HOM05D002369 ORTHO05D002435 6.3e-14 80.5 74 67.6
Thhalv10021823m.g Eutrema salsugineum HOM05D002369 ORTHO05D002435 6.3e-14 80.5 76 65.8
SGA_v2.0_scaffold79G25610 Striga asiatica HOM05D002369 ORTHO05D002435 6.3e-14 80.5 78 62.8
MELO3C006489.2 Cucumis melo HOM05D002369 ORTHO05D002435 1.4e-13 79.3 71 64.8
CSS0011418 Camellia sinensis var. sinensis HOM05D002369 ORTHO05D002435 1.8e-13 79.0 80 63.8
BcaC09g49225 Brassica carinata HOM05D002369 ORTHO05D002435 2.4e-13 78.6 76 63.2
BcaC09g49226 Brassica carinata HOM05D002369 ORTHO05D002435 2.4e-13 78.6 76 63.2
Actinidia18524 Actinidia chinensis HOM05D002369 ORTHO05D002435 3.2e-13 78.2 56 76.8
ECA240G0675 Erigeron canadensis HOM05D002369 ORTHO05D002435 3.2e-13 78.2 65 70.8
Rhsim04G0195900 Rhododendron simsii HOM05D002369 ORTHO05D002435 3.2e-13 78.2 78 60.3
MSTRG.4075 Avicennia marina HOM05D002369 ORTHO05D002435 4.1e-13 77.8 54 79.6
BraA01t03343Z Brassica rapa HOM05D002369 ORTHO05D002435 4.1e-13 77.8 76 63.2
DCAR_002359 Daucus carota HOM05D002369 ORTHO05D002435 4.1e-13 77.8 67 68.7
THA.LOC104808581 Tarenaya hassleriana HOM05D002369 ORTHO05D002435 4.1e-13 77.8 76 63.2
CsaV3_3G012780 Cucumis sativus L. HOM05D002369 ORTHO05D002435 5.4e-13 77.4 71 62.0
PGSC0003DMG401016272 Solanum tuberosum HOM05D002369 ORTHO05D002435 5.4e-13 77.4 60 70.0
PGR004G0390 Punica granatum HOM05D002369 ORTHO05D002435 1.2e-12 76.3 76 61.8
TAR549G0004 Trochodendron aralioides HOM05D002369 ORTHO05D002435 1.2e-12 76.3 78 60.3
Sed0012894 Sechium edule HOM05D002369 ORTHO05D002435 1.6e-12 75.9 67 64.2
vmacro15392 Vaccinium macrocarpon HOM05D002369 ORTHO05D002435 1.6e-12 75.9 73 64.4
EL10Ac3g06275 Beta vulgaris HOM05D002369 ORTHO05D002435 2.0e-12 75.5 61 67.2
PSO210G4121 Papaver somniferum HOM05D002369 ORTHO05D002435 2.0e-12 75.5 62 69.4
PSO461G0081 Papaver somniferum HOM05D002369 ORTHO05D002435 2.0e-12 75.5 62 69.4
MELO3C014277.2 Cucumis melo HOM05D002369 ORTHO05D002435 3.5e-12 74.7 60 75.0
Hund20657 Selenicereus undatus HOM05D002369 ORTHO05D002435 3.5e-12 74.7 60 68.3
MSTRG.9944 Avicennia marina HOM05D002369 ORTHO05D002435 4.6e-12 74.3 76 61.8
Rhsim02G0031300 Rhododendron simsii HOM05D002369 ORTHO05D002435 7.8e-12 73.6 73 61.6
HanXRQChr03g0092851 Helianthus annuus HOM05D002369 ORTHO05D002435 1.0e-11 73.2 65 64.6
BcaB04g20484 Brassica carinata HOM05D002369 ORTHO05D002435 1.7e-11 72.4 76 59.2
Actinidia40105 Actinidia chinensis HOM05D002369 ORTHO05D002435 2.3e-11 72.0 67 65.7
Aqoxy2G03486 Aquilegia oxysepala HOM05D002369 ORTHO05D002435 2.3e-11 72.0 63 65.1
AUR62029992 Chenopodium quinoa HOM05D000148 ORTHO05D000081 2.3e-11 72.0 60 65.0
Os03g0635100 Oryza sativa ssp. japonica HOM05D002369 ORTHO05D002435 2.3e-11 72.0 56 69.6
Gohir.A08G062800 Gossypium hirsutum HOM05D002369 ORTHO05D002435 5.0e-11 70.9 71 56.3
Gohir.D08G071900 Gossypium hirsutum HOM05D002369 ORTHO05D002435 5.0e-11 70.9 71 56.3
Gorai.004G075900 Gossypium raimondii HOM05D002369 ORTHO05D002435 5.0e-11 70.9 71 56.3
Gorai.007G140700 Gossypium raimondii HOM05D002369 ORTHO05D002435 5.0e-11 70.9 71 57.7
ATR0665G333 Amborella trichopoda HOM05D002369 ORTHO05D002435 6.6e-11 70.5 74 56.8
CiPaw.02G118700 Carya illinoinensis HOM05D002369 ORTHO05D002435 8.6e-11 70.1 84 60.7
DCAR_024192 Daucus carota HOM05D002369 ORTHO05D002435 1.5e-10 69.3 79 55.7
Duzib138G1466 Durio zibethinus HOM05D002369 ORTHO05D002435 1.5e-10 69.3 73 54.8
Ciclev10022979m.g Citrus clementina HOM05D002369 ORTHO05D002435 2.5e-10 68.6 56 67.9
Psat0s2465g0080 Pisum sativum HOM05D002369 ORTHO05D002435 3.3e-10 68.2 80 52.5
Atru.chr5.1536 Acer truncatum HOM05D002369 ORTHO05D002435 4.3e-10 67.8 74 56.8
Gohir.D11G131350 Gossypium hirsutum HOM05D002369 ORTHO05D002435 4.3e-10 67.8 71 56.3
COL.COLO4_09172 Corchorus olitorius HOM05D002369 ORTHO05D002435 7.3e-10 67.0 78 51.3
Zm00001eb050990 Zea mays HOM05D002369 ORTHO05D002435 7.3e-10 67.0 56 66.1
Potri.005G216100 Populus trichocarpa HOM05D002369 ORTHO05D002435 9.5e-10 66.6 56 64.3
Duzib133G1543 Durio zibethinus HOM05D002369 ORTHO05D002435 1.2e-09 66.2 71 54.9
Thecc.01G269900 Theobroma cacao HOM05D002369 ORTHO05D002435 1.2e-09 66.2 71 53.5
Haze_04631 Corylus avellana HOM05D002369 ORTHO05D002435 2.8e-09 65.1 75 56.0
Lalb_Chr06g0162741 Lupinus albus HOM05D002369 ORTHO05D002435 2.8e-09 65.1 72 50.0
TPR.G39103 Trifolium pratense HOM05D002369 ORTHO05D002435 2.8e-09 65.1 54 61.1
Duzib211G0265 Durio zibethinus HOM05D002369 ORTHO05D002435 3.6e-09 64.7 73 54.8
Medtr1g071100 Medicago truncatula HOM05D002369 ORTHO05D002435 3.6e-09 64.7 79 49.4
Glyma.10G030900 Glycine max HOM05D002369 ORTHO05D002435 4.7e-09 64.3 54 61.1
Manes.05G082600 Manihot esculenta HOM05D002369 ORTHO05D002435 4.7e-09 64.3 72 54.2
Potri.002G046900 Populus trichocarpa HOM05D002369 ORTHO05D002435 4.7e-09 64.3 77 54.5
Eucgr.B01476 Eucalyptus grandis HOM05D002369 ORTHO05D002435 6.2e-09 63.9 74 55.4
SEGI_16021 Sequoiadendron giganteum HOM05D002369 ORTHO05D002435 6.2e-09 63.9 78 52.6
Glyma.02G143500 Glycine max HOM05D002369 ORTHO05D002435 8.0e-09 63.5 54 63.0
HPP92_000928 Vanilla planifolia HOM05D002369 ORTHO05D002435 8.0e-09 63.5 60 60.0
PSO210G7530 Papaver somniferum HOM05D002369 ORTHO05D002435 1.0e-08 63.2 61 59.0
Phvul.007G175700 Phaseolus vulgaris HOM05D002369 ORTHO05D002435 1.8e-08 62.4 77 49.4
Sc13g0004850 Simmondsia chinensis HOM05D002369 ORTHO05D002435 2.3e-08 62.0 47 76.6
Haze_11254 Corylus avellana HOM05D002369 ORTHO05D002435 3.1e-08 61.6 45 77.8
Sabra05G0165600 Salix brachista HOM05D002369 ORTHO05D002435 3.1e-08 61.6 78 51.3
MD03G1256500 Malus domestica HOM05D002369 ORTHO05D002435 4.0e-08 61.2 84 47.6
Sed0025388 Sechium edule HOM05D002369 ORTHO05D002435 6.8e-08 60.5 56 58.9
MELO3C031169.2 Cucumis melo HOM05D002369 ORTHO05D002435 8.9e-08 60.1 56 57.1
CsaV3_2G013810 Cucumis sativus L. HOM05D002369 ORTHO05D002435 8.9e-08 60.1 56 57.1
PSO210G0026 Papaver somniferum HOM05D002369 ORTHO05D002435 1.5e-07 59.3 69 53.6
COL.COLO4_13178 Corchorus olitorius HOM05D002369 ORTHO05D002435 2.0e-07 58.9 46 76.1
Lj5g0020100 Lotus japonicus HOM05D002369 ORTHO05D002435 2.0e-07 58.9 76 46.1
RcHm_v2.0_Chr6g0289751 Rosa chinensis HOM05D002369 ORTHO05D002435 2.6e-07 58.5 76 44.7
CiPaw.07G086200 Carya illinoinensis HOM05D002369 ORTHO05D002435 3.4e-07 58.2 76 52.6
FvH4_2g22840 Fragaria vesca HOM05D002369 ORTHO05D002435 3.4e-07 58.2 78 43.6
Actinidia04496 Actinidia chinensis HOM05D002369 ORTHO05D002435 4.4e-07 57.8 41 78.0
Actinidia27516 Actinidia chinensis HOM05D002369 ORTHO05D002435 4.4e-07 57.8 41 78.0
BcaB02g08059 Brassica carinata HOM05D002369 ORTHO05D002435 5.8e-07 57.4 60 53.3
CSS0021636 Camellia sinensis var. sinensis HOM05D002369 ORTHO05D002435 5.8e-07 57.4 78 51.3
CSS0047440 Camellia sinensis var. sinensis HOM05D002369 ORTHO05D002435 5.8e-07 57.4 78 51.3
ClCG07G000530 Citrullus lanatus HOM05D002369 ORTHO05D002435 7.5e-07 57.0 56 53.6
Nn3g19458 Nelumbo nucifera HOM05D002369 ORTHO05D002435 7.5e-07 57.0 73 52.1
C04p29870 Brassica napus HOM05D002369 ORTHO05D002435 9.8e-07 56.6 60 53.3
BolC4t24518H Brassica oleracea HOM05D002369 ORTHO05D002435 9.8e-07 56.6 60 53.3
TAR362G0818 Trochodendron aralioides HOM05D002369 ORTHO05D002435 9.8e-07 56.6 63 60.3
arahy.Tifrunner.gnm1.ann1.I7ZHZM Arachis hypogaea HOM05D002369 ORTHO05D002435 1.7e-06 55.8 72 48.6
A09p55090 Brassica napus HOM05D002369 ORTHO05D002435 1.7e-06 55.8 58 55.2
BraA09t40916Z Brassica rapa HOM05D002369 ORTHO05D002435 1.7e-06 55.8 58 55.2
C08p38030 Brassica napus HOM05D002369 ORTHO05D002435 2.2e-06 55.5 58 53.4
Thhalv10006334m.g Eutrema salsugineum HOM05D002369 ORTHO05D002435 2.2e-06 55.5 54 57.4
BcaC07g40808 Brassica carinata HOM05D002369 ORTHO05D002435 3.7e-06 54.7 58 51.7
CARHR291560 Cardamine hirsuta HOM05D002369 ORTHO05D002435 3.7e-06 54.7 63 49.2
TWI75G0117 Tripterygium wilfordii HOM05D002369 ORTHO05D002435 3.7e-06 54.7 72 47.2
ECA233G4587 Erigeron canadensis HOM05D002369 ORTHO05D002435 4.9e-06 54.3 66 53.0
FAN20G0999 Fragaria x ananassa HOM05D002369 ORTHO05D002435 4.9e-06 54.3 76 40.8
Aa31LG10G17270 Aethionema arabicum HOM05D002369 ORTHO05D002435 6.4e-06 53.9 54 53.7
Zm00001eb231850 Zea mays HOM05D002369 ORTHO05D002435 6.4e-06 53.9 53 52.8
Sp5g00130 Schrenkiella parvula HOM05D002369 ORTHO05D002435 8.3e-06 53.5 54 55.6


User provided reference genes

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