Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p000163 Quercus lobata HOM05D003468 ORTHO05D002806 5.5e-125 451.1 238 100.0
QL02p029550 Quercus lobata HOM05D003468 ORTHO05D002806 3.8e-118 428.3 228 100.0
QL02p099821 Quercus lobata HOM05D003468 ORTHO05D002806 3.7e-89 332.0 216 83.8
QL01p024883 Quercus lobata HOM05D003468 ORTHO05D002806 7.5e-58 228.0 188 70.2
Haze_24464 Corylus avellana HOM05D003468 ORTHO05D002806 5.6e-53 211.8 219 55.7
Cfa021527 Carpinus fangiana HOM05D003468 ORTHO05D002806 1.3e-49 200.7 195 56.9
Sed0021873 Sechium edule HOM05D003468 ORTHO05D002806 8.1e-44 181.4 188 51.1
Psat5g148920 Pisum sativum HOM05D003468 ORTHO05D002806 9.9e-42 174.5 205 48.8
CiPaw.14G050900 Carya illinoinensis HOM05D003468 ORTHO05D002806 1.3e-41 174.1 189 55.6
Lalb_Chr18g0054251 Lupinus albus HOM05D003468 ORTHO05D002806 3.7e-41 172.6 196 48.5
Lj6g0018146 Lotus japonicus HOM05D003468 ORTHO05D002806 4.1e-40 169.1 196 48.0
Lalb_Chr15g0085871 Lupinus albus HOM05D003468 ORTHO05D002806 4.1e-40 169.1 204 46.6
GSVIVG01024564001 Vitis vinifera HOM05D003468 ORTHO05D002806 8.6e-38 161.4 219 43.8
ClCG02G019040 Citrullus lanatus HOM05D003468 ORTHO05D002806 4.3e-37 159.1 190 46.8
Medtr3g467090 Medicago truncatula HOM05D003468 ORTHO05D002806 1.6e-36 157.1 196 45.9
VMungo0540G0681 Vigna mungo HOM05D003468 ORTHO05D002806 8.1e-36 154.8 194 49.0
TPR.G28801 Trifolium pratense HOM05D003468 ORTHO05D002806 1.4e-35 154.1 205 43.4
Ca_15053_v3 Cicer arietinum L. HOM05D003468 ORTHO05D002806 2.4e-35 153.3 241 40.2
Sc09g0001380 Simmondsia chinensis HOM05D003468 ORTHO05D002806 5.2e-35 152.1 201 44.8
arahy.Tifrunner.gnm1.ann1.UJZR4Z Arachis hypogaea HOM05D003468 ORTHO05D002806 6.8e-35 151.8 197 45.2
arahy.Tifrunner.gnm1.ann1.NCBN9K Arachis hypogaea HOM05D003468 ORTHO05D002806 8.9e-35 151.4 197 45.7
arahy.Tifrunner.gnm1.ann1.596HBI Arachis hypogaea HOM05D003468 ORTHO05D002806 2.0e-34 150.2 197 45.7
arahy.Tifrunner.gnm1.ann1.DRQC3V Arachis hypogaea HOM05D003468 ORTHO05D002806 2.6e-34 149.8 189 47.1
Phvul.006G078200 Phaseolus vulgaris HOM05D003468 ORTHO05D002806 2.6e-34 149.8 194 47.4
TPR.G10431 Trifolium pratense HOM05D003468 ORTHO05D002806 2.2e-33 146.7 206 42.7
MELO3C026878.2 Cucumis melo HOM05D003468 ORTHO05D002806 2.9e-33 146.4 190 44.2
Sc16g0010510 Simmondsia chinensis HOM05D003468 ORTHO05D002806 3.8e-33 146.0 202 41.6
CsaV3_6G013110 Cucumis sativus L. HOM05D003468 ORTHO05D002806 1.9e-32 143.7 225 40.4
Dinv28729 Davidia involucrata HOM05D003468 ORTHO05D002806 4.2e-32 142.5 190 41.1
CSS0029508 Camellia sinensis var. sinensis HOM05D003468 ORTHO05D002806 5.4e-32 142.1 216 39.4
AUR62000285 Chenopodium quinoa HOM05D003468 ORTHO05D002806 1.6e-31 140.6 190 45.3
MD11G1054300 Malus domestica HOM05D003468 ORTHO05D002806 2.1e-31 140.2 185 46.5
AUR62006633 Chenopodium quinoa HOM05D003468 ORTHO05D002806 7.8e-31 138.3 190 43.7
MD03G1052200 Malus domestica HOM05D003468 ORTHO05D002806 1.3e-30 137.5 190 45.8
Ah.06g195340 Amaranthus hybridus HOM05D003468 ORTHO05D002806 3.0e-30 136.3 190 41.1
CANSAT54G1733 Cannabis sativa HOM05D003468 ORTHO05D002806 3.9e-30 136.0 203 43.8
PGSC0003DMG400030385 Solanum tuberosum HOM05D003468 ORTHO05D002806 3.9e-30 136.0 192 42.2
Prupe.6G041700 Prunus persica HOM05D003468 ORTHO05D002806 5.1e-30 135.6 185 44.3
Sed0014984 Sechium edule HOM05D003468 ORTHO05D002806 5.1e-30 135.6 186 42.5
RcHm_v2.0_Chr5g0000441 Rosa chinensis HOM05D003468 ORTHO05D002806 6.6e-30 135.2 207 44.4
Ah.04g159140 Amaranthus hybridus HOM05D003468 ORTHO05D002806 1.1e-29 134.4 189 40.2
Eucgr.B00490 Eucalyptus grandis HOM05D003468 ORTHO05D002806 3.3e-29 132.9 222 41.4
Glyma.11G186600 Glycine max HOM05D003468 ORTHO05D002806 4.3e-29 132.5 202 42.6
EL10Ac4g10009 Beta vulgaris HOM05D003468 ORTHO05D002806 7.3e-29 131.7 197 40.6
Lj2A1101T50 Lonicera japonica HOM05D003468 ORTHO05D002806 9.6e-29 131.3 220 37.7
EL10Ac1g01349 Beta vulgaris HOM05D003468 ORTHO05D002806 1.2e-28 131.0 196 40.3
RcHm_v2.0_Chr7g0218431 Rosa chinensis HOM05D003468 ORTHO05D002806 1.2e-28 131.0 187 46.0
RcHm_v2.0_Chr5g0073101 Rosa chinensis HOM05D003468 ORTHO05D002806 2.1e-28 130.2 207 42.5
TAR633G1116 Trochodendron aralioides HOM05D003468 ORTHO05D002806 2.1e-28 130.2 192 42.2
Eucgr.B00647 Eucalyptus grandis HOM05D003468 ORTHO05D002806 3.6e-28 129.4 234 40.2
Hund21917 Selenicereus undatus HOM05D003468 ORTHO05D002806 3.6e-28 129.4 189 42.3
Solyc06g082510.3 Solanum lycopersicum HOM05D003468 ORTHO05D002806 1.8e-27 127.1 190 40.5
CANSAT25G2600 Cannabis sativa HOM05D003468 ORTHO05D002806 2.4e-27 126.7 199 43.2
Glyma.06G216400 Glycine max HOM05D003468 ORTHO05D002806 3.1e-27 126.3 232 39.7
arahy.Tifrunner.gnm1.ann1.C9TTE9 Arachis hypogaea HOM05D003468 ORTHO05D002806 5.3e-27 125.6 189 41.8
arahy.Tifrunner.gnm1.ann1.ZR769L Arachis hypogaea HOM05D003468 ORTHO05D002806 5.3e-27 125.6 189 41.8
Glyma.18G052700 Glycine max HOM05D003468 ORTHO05D002806 5.3e-27 125.6 203 42.9
Sopen06g033890 Solanum pennellii HOM05D003468 ORTHO05D002806 5.3e-27 125.6 190 40.0
COL.COLO4_33672 Corchorus olitorius HOM05D003468 ORTHO05D002806 6.9e-27 125.2 198 42.9
Glyma.04G148800 Glycine max HOM05D003468 ORTHO05D002806 6.9e-27 125.2 227 37.9
Phvul.009G025400 Phaseolus vulgaris HOM05D003468 ORTHO05D002806 1.5e-26 124.0 192 37.5
Potri.013G154500 Populus trichocarpa HOM05D003468 ORTHO05D002806 1.5e-26 124.0 192 40.1
Psat5g003000 Pisum sativum HOM05D003468 ORTHO05D002806 2.0e-26 123.6 221 36.7
FAN21G2193 Fragaria x ananassa HOM05D003468 ORTHO05D002806 2.6e-26 123.2 207 41.1
Rhsim01G0242800 Rhododendron simsii HOM05D003468 ORTHO05D002806 2.6e-26 123.2 190 39.5
MSTRG.17916 Avicennia marina HOM05D003468 ORTHO05D002806 3.4e-26 122.9 191 41.4
Hma1.2p1_0170F.1_g075010 Hydrangea macrophylla HOM05D003468 ORTHO05D002806 3.4e-26 122.9 191 42.4
Actinidia34492 Actinidia chinensis HOM05D003468 ORTHO05D002806 4.4e-26 122.5 205 39.0
vmacro10619 Vaccinium macrocarpon HOM05D003468 ORTHO05D002806 4.4e-26 122.5 227 33.5
Nitab4.5_0000002g0180 Nicotiana tabacum HOM05D003468 ORTHO05D002806 5.8e-26 122.1 180 38.3
FvH4_3g40451 Fragaria vesca HOM05D003468 ORTHO05D002806 9.9e-26 121.3 207 40.1
FvH4_5g27240 Fragaria vesca HOM05D003468 ORTHO05D002806 9.9e-26 121.3 190 43.2
FAN08G2580 Fragaria x ananassa HOM05D003468 ORTHO05D002806 9.9e-26 121.3 190 42.6
FAN11G0916 Fragaria x ananassa HOM05D003468 ORTHO05D002806 9.9e-26 121.3 207 40.1
Nitab4.5_0002620g0010 Nicotiana tabacum HOM05D003468 ORTHO05D002806 9.9e-26 121.3 180 38.3
Sabra13G0124400 Salix brachista HOM05D003468 ORTHO05D002806 1.3e-25 120.9 193 40.4
CAN.G874.78 Capsicum annuum HOM05D003468 ORTHO05D002806 1.7e-25 120.6 193 38.3
DCAR_026483 Daucus carota HOM05D003468 ORTHO05D002806 1.7e-25 120.6 195 40.0
RcHm_v2.0_Chr7g0221541 Rosa chinensis HOM05D003468 ORTHO05D002806 2.2e-25 120.2 187 43.9
FAN18G3325 Fragaria x ananassa HOM05D003468 ORTHO05D002806 3.8e-25 119.4 190 42.6
Nitab4.5_0002091g0050 Nicotiana tabacum HOM05D003468 ORTHO05D002806 3.8e-25 119.4 192 37.5
Cpa.g.sc85.113 Carica papaya HOM05D003468 ORTHO05D002806 4.9e-25 119.0 197 40.1
FAN16G1667 Fragaria x ananassa HOM05D003468 ORTHO05D002806 4.9e-25 119.0 202 40.1
PGR129G0007 Punica granatum HOM05D003468 ORTHO05D002806 4.9e-25 119.0 200 40.5
FAN04G1909 Fragaria x ananassa HOM05D003468 ORTHO05D002806 8.4e-25 118.2 190 41.6
Nitab4.5_0002759g0060 Nicotiana tabacum HOM05D003468 ORTHO05D002806 1.1e-24 117.9 192 37.5
VMungo1309G2250 Vigna mungo HOM05D003468 ORTHO05D002806 1.9e-24 117.1 206 35.9
SGA_v2.0_scaffold120G32985 Striga asiatica HOM05D003468 ORTHO05D002806 3.2e-24 116.3 193 38.3
Thecc.01G157300 Theobroma cacao HOM05D003468 ORTHO05D002806 3.2e-24 116.3 199 40.7
FAN13G0004 Fragaria x ananassa HOM05D003468 ORTHO05D002806 4.2e-24 115.9 190 41.6
HanXRQChr16g0522621 Helianthus annuus HOM05D003468 ORTHO05D002806 4.2e-24 115.9 194 37.1
FvH4_5g00450 Fragaria vesca HOM05D003468 ORTHO05D002806 7.1e-24 115.2 211 40.3
FAN13G3328 Fragaria x ananassa HOM05D003468 ORTHO05D002806 7.1e-24 115.2 199 41.7
FAN18G2440 Fragaria x ananassa HOM05D003468 ORTHO05D002806 7.1e-24 115.2 211 40.3
SHI19247 Sapria himalayana HOM05D003468 ORTHO05D002806 9.3e-24 114.8 204 38.2
TWI79G0734 Tripterygium wilfordii HOM05D003468 ORTHO05D002806 1.6e-23 114.0 205 37.1
Thecc.01G027400 Theobroma cacao HOM05D003468 ORTHO05D002806 2.1e-23 113.6 199 40.2
Lsat_1_v5_gn_8_109320 Lactuca sativa HOM05D003468 ORTHO05D002806 3.5e-23 112.8 222 36.0
Manes.10G065600 Manihot esculenta HOM05D003468 ORTHO05D002806 3.5e-23 112.8 227 39.2
Nn2g10321 Nelumbo nucifera HOM05D003468 ORTHO05D002806 4.6e-23 112.5 188 41.5
MBI16_g27567_MAGBIO Magnolia biondii HOM05D003468 ORTHO05D002806 6.0e-23 112.1 188 37.8
Nn3g19626 Nelumbo nucifera HOM05D003468 ORTHO05D002806 6.0e-23 112.1 189 42.9
Cc01_g15290 Coffea canephora HOM05D003468 ORTHO05D002806 1.3e-22 110.9 190 36.3
VMungo1309G0821 Vigna mungo HOM05D003468 ORTHO05D002806 1.3e-22 110.9 189 37.6
Lsat_1_v5_gn_9_13861 Lactuca sativa HOM05D003468 ORTHO05D002806 2.3e-22 110.2 193 36.8
Peaxi162Scf01078g00514 Petunia axillaris HOM05D003468 ORTHO05D002806 2.3e-22 110.2 187 36.9
Lj1g0000690 Lotus japonicus HOM05D003468 ORTHO05D002806 3.0e-22 109.8 204 33.8
MSTRG.12708 Avicennia marina HOM05D003468 ORTHO05D002806 3.9e-22 109.4 195 39.5
COL.COLO4_13781 Corchorus olitorius HOM05D003468 ORTHO05D002806 5.1e-22 109.0 152 38.8
Peaxi162Scf00390g00336 Petunia axillaris HOM05D003468 ORTHO05D002806 3.3e-21 106.3 190 37.9
Thecc.06G237700 Theobroma cacao HOM05D003468 ORTHO05D002806 7.3e-21 105.1 160 38.8
Gorai.011G008700 Gossypium raimondii HOM05D003468 ORTHO05D002806 2.8e-20 103.2 155 39.4
Gohir.D10G008000 Gossypium hirsutum HOM05D003468 ORTHO05D002806 3.6e-20 102.8 155 39.4
Aqoxy4G02393 Aquilegia oxysepala HOM05D003468 ORTHO05D002806 6.2e-20 102.1 188 36.2
FAN05G3624 Fragaria x ananassa HOM05D003468 ORTHO05D002806 6.2e-20 102.1 160 42.5
PSO541G3532 Papaver somniferum HOM05D003468 ORTHO05D002806 6.2e-20 102.1 196 34.7
Migut.M01993 Erythranthe guttata HOM05D003468 ORTHO05D002806 8.1e-20 101.7 192 34.4
Gohir.A10G008200 Gossypium hirsutum HOM05D003468 ORTHO05D002806 1.8e-19 100.5 155 38.7
PSO675G8835 Papaver somniferum HOM05D003468 ORTHO05D002806 1.8e-19 100.5 196 35.7
Thecc.01G157400 Theobroma cacao HOM05D003468 ORTHO05D002806 2.4e-19 100.1 191 38.7
COL.COLO4_33674 Corchorus olitorius HOM05D003468 ORTHO05D002806 3.1e-19 99.8 194 39.2
Gohir.A09G085500 Gossypium hirsutum HOM05D003468 ORTHO05D002806 4.0e-19 99.4 188 39.9
Lj6g0007992 Lotus japonicus HOM05D003468 ORTHO05D002806 5.3e-19 99.0 223 31.4
Oeu064681.2 Olea europaea HOM05D003468 ORTHO05D002806 5.3e-19 99.0 192 37.0
CDE07G0878 Ceratophyllum demersum HOM05D003468 ORTHO05D002806 9.0e-19 98.2 188 36.7
Gohir.D09G085500 Gossypium hirsutum HOM05D003468 ORTHO05D002806 9.0e-19 98.2 188 39.9
Peaxi162Scf00362g01055 Petunia axillaris HOM05D003468 ORTHO05D002806 1.2e-18 97.8 195 35.9
SGA_v2.0_scaffold77G25360 Striga asiatica HOM05D003468 ORTHO05D002806 1.2e-18 97.8 172 39.5
Gorai.006G101500 Gossypium raimondii HOM05D003468 ORTHO05D002806 1.5e-18 97.4 188 39.9
Duzib192G0804 Durio zibethinus HOM05D003468 ORTHO05D002806 2.6e-18 96.7 157 35.0
TPR.G5928 Trifolium pratense HOM05D003468 ORTHO05D002806 3.4e-18 96.3 184 35.9
SalBow2G1693 Salvia bowleyana HOM05D003468 ORTHO05D002806 3.8e-17 92.8 229 31.4
BcaC05g29987 Brassica carinata HOM05D009360 ORTHO05D002806 8.4e-17 91.7 175 36.0
Ca_15313_v3 Cicer arietinum L. HOM05D003468 ORTHO05D002806 1.9e-16 90.5 201 28.9
A10p15910 Brassica napus HOM05D000295 ORTHO05D000188 9.3e-16 88.2 195 34.4
DCAR_005492 Daucus carota HOM05D003468 ORTHO05D002806 9.3e-16 88.2 190 37.9
arahy.Tifrunner.gnm1.ann1.HB1RT4 Arachis hypogaea HOM05D003468 ORTHO05D002806 2.7e-15 86.7 162 38.9
arahy.Tifrunner.gnm1.ann1.R24AWJ Arachis hypogaea HOM05D003468 ORTHO05D002806 2.7e-15 86.7 162 38.9
A05p42550 Brassica napus HOM05D009360 ORTHO05D002806 2.7e-15 86.7 195 35.9
BraA05t22997Z Brassica rapa HOM05D009360 ORTHO05D002806 2.7e-15 86.7 195 35.9
BraA10t43633Z Brassica rapa HOM05D009360 ORTHO05D002806 2.7e-15 86.7 195 34.9
Ca_15309_v3 Cicer arietinum L. HOM05D003468 ORTHO05D002806 2.7e-15 86.7 186 33.9
Sed0002722 Sechium edule HOM05D003468 ORTHO05D002806 4.6e-15 85.9 175 36.6
C05p62230 Brassica napus HOM05D009360 ORTHO05D002806 6.0e-15 85.5 173 37.6
BolC5t34879H Brassica oleracea HOM05D009360 ORTHO05D002806 6.0e-15 85.5 173 37.6
Sp6g20000 Schrenkiella parvula HOM05D009360 ORTHO05D002806 7.9e-15 85.1 172 33.7
DCAR_017858 Daucus carota HOM05D003468 ORTHO05D002806 1.0e-14 84.7 188 36.7
Carub.0001s1549 Capsella rubella HOM05D009360 ORTHO05D002806 1.3e-14 84.3 186 31.2
THA.LOC104810722 Tarenaya hassleriana HOM05D009360 ORTHO05D002806 1.8e-14 84.0 198 33.8
AT1G15720 Arabidopsis thaliana HOM05D009360 ORTHO05D002806 3.9e-14 82.8 186 31.2
C09p50220 Brassica napus HOM05D000295 ORTHO05D000188 5.1e-14 82.4 156 34.0
HPP92_009505 Vanilla planifolia HOM05D003468 ORTHO05D002806 5.1e-14 82.4 187 35.8
AT5G58340 Arabidopsis thaliana HOM05D009360 ORTHO05D002806 1.1e-13 81.3 172 32.0
Oeu058241.1 Olea europaea HOM05D003468 ORTHO05D002806 1.1e-13 81.3 191 35.1
BcaB08g36171 Brassica carinata HOM05D009360 ORTHO05D002806 1.5e-13 80.9 202 34.7
Thhalv10013531m.g Eutrema salsugineum HOM05D009360 ORTHO05D002806 1.5e-13 80.9 172 32.6
ATR0739G097 Amborella trichopoda HOM05D003468 ORTHO05D002806 1.9e-13 80.5 218 32.1
Medtr3g116690 Medicago truncatula HOM05D003468 ORTHO05D002806 1.9e-13 80.5 218 30.7
Medtr3g117790 Medicago truncatula HOM05D003468 ORTHO05D002806 1.9e-13 80.5 218 30.7
Aqoxy6G01245 Aquilegia oxysepala HOM05D003468 ORTHO05D002806 3.3e-13 79.7 190 33.7
CARHR016220 Cardamine hirsuta HOM05D009360 ORTHO05D002806 7.4e-13 78.6 169 31.4
BcaC04g19876 Brassica carinata HOM05D009360 ORTHO05D002806 1.6e-12 77.4 156 33.3
AL8G34440 Arabidopsis lyrata HOM05D009360 ORTHO05D002806 2.1e-12 77.0 172 32.0
BolC9t57878H Brassica oleracea HOM05D009360 ORTHO05D002806 2.1e-12 77.0 156 32.7
AL1G27830 Arabidopsis lyrata HOM05D009360 ORTHO05D002806 3.1e-11 73.2 170 31.8
Carub.0008s1888 Capsella rubella HOM05D009360 ORTHO05D002806 3.1e-11 73.2 169 32.5
Thhalv10022421m.g Eutrema salsugineum HOM05D009360 ORTHO05D002806 3.1e-11 73.2 167 32.9
MBI16_g24842_MAGBIO Magnolia biondii HOM05D003468 ORTHO05D002806 6.9e-11 72.0 84 44.0
HPP92_005948 Vanilla planifolia HOM05D003468 ORTHO05D002806 1.2e-10 71.2 187 32.6
ECA247G2629 Erigeron canadensis HOM05D003468 ORTHO05D002806 2.0e-10 70.5 200 26.0
HPP92_019205 Vanilla planifolia HOM05D003468 ORTHO05D002806 2.0e-10 70.5 181 30.4
EL10As3g23307 Beta vulgaris HOM05D003468 ORTHO05D002806 4.9e-09 65.9 115 39.1
SalBow4G1032 Salvia bowleyana HOM05D003468 ORTHO05D002806 4.9e-09 65.9 185 29.7
unitig_0.g430 Utricularia gibba HOM05D003468 ORTHO05D002806 1.6e-07 60.8 190 26.8
Migut.M02021 Erythranthe guttata HOM05D003468 ORTHO05D002806 2.1e-07 60.5 185 27.0


User provided reference genes

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