Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p000087 Quercus lobata HOM05D005754 ORTHO05D006843 2.0e-127 459.1 235 100.0
QL03p068630 Quercus lobata HOM05D005754 ORTHO05D006843 1.3e-94 350.1 295 67.5
QL05p030092 Quercus lobata HOM05D005754 ORTHO05D006843 1.3e-94 350.1 295 67.5
CiPaw.09G178700 Carya illinoinensis HOM05D005754 ORTHO05D006843 6.0e-92 341.3 295 64.7
CiPaw.09G178800 Carya illinoinensis HOM05D005754 ORTHO05D006843 3.0e-91 339.0 295 64.4
Cfa001129 Carpinus fangiana HOM05D005754 ORTHO05D006843 8.7e-91 337.4 295 65.4
Haze_05263 Corylus avellana HOM05D005754 ORTHO05D006843 8.7e-91 337.4 295 65.4
Duzib151G1210 Durio zibethinus HOM05D005754 ORTHO05D006843 4.2e-85 318.5 295 62.0
Thecc.04G266000 Theobroma cacao HOM05D005754 ORTHO05D006843 1.0e-83 313.9 295 60.7
Lalb_Chr17g0344101 Lupinus albus HOM05D005754 ORTHO05D006843 2.3e-83 312.8 292 61.0
Cpa.g.sc17.6 Carica papaya HOM05D005754 ORTHO05D006843 3.9e-83 312.0 295 61.7
COL.COLO4_15977 Corchorus olitorius HOM05D005754 ORTHO05D006843 8.7e-83 310.8 295 60.0
Glyma.12G019600 Glycine max HOM05D005754 ORTHO05D006843 1.1e-82 310.5 295 60.0
TPR.G24478 Trifolium pratense HOM05D005754 ORTHO05D006843 2.5e-82 309.3 296 60.5
Ca_04011_v3 Cicer arietinum L. HOM05D005754 ORTHO05D006843 3.7e-81 305.4 291 59.8
TPR.G21775 Trifolium pratense HOM05D005754 ORTHO05D006843 3.7e-81 305.4 296 59.8
Potri.001G160600 Populus trichocarpa HOM05D005754 ORTHO05D006843 8.1e-81 304.3 295 59.3
TAR636G0743 Trochodendron aralioides HOM05D005754 ORTHO05D006843 8.1e-81 304.3 295 58.3
TAR636G1551 Trochodendron aralioides HOM05D005754 ORTHO05D006843 8.1e-81 304.3 295 58.3
VMungo1127G0046 Vigna mungo HOM05D005754 ORTHO05D006843 8.1e-81 304.3 295 59.0
arahy.Tifrunner.gnm1.ann1.RJAX1V Arachis hypogaea HOM05D005754 ORTHO05D006843 1.4e-80 303.5 296 59.1
Medtr3g077990 Medicago truncatula HOM05D005754 ORTHO05D006843 1.4e-80 303.5 290 60.0
MD05G1011700 Malus domestica HOM05D005754 ORTHO05D006843 2.4e-80 302.8 295 61.0
Potri.003G074300 Populus trichocarpa HOM05D005754 ORTHO05D006843 4.0e-80 302.0 295 60.0
Sabra03G0045000 Salix brachista HOM05D005754 ORTHO05D006843 4.0e-80 302.0 295 60.0
Ciclev10016094m.g Citrus clementina HOM05D005754 ORTHO05D006843 2.9e-78 295.8 286 60.1
Nn2g13637 Nelumbo nucifera HOM05D005754 ORTHO05D006843 2.9e-78 295.8 295 57.6
Nn2g13638 Nelumbo nucifera HOM05D005754 ORTHO05D006843 2.9e-78 295.8 295 57.6
arahy.Tifrunner.gnm1.ann1.9I9HCV Arachis hypogaea HOM05D005754 ORTHO05D006843 4.9e-78 295.0 296 58.1
Gohir.D09G228000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 4.9e-78 295.0 295 58.0
Gorai.006G250700 Gossypium raimondii HOM05D005754 ORTHO05D006843 4.9e-78 295.0 295 58.0
Manes.16G050000 Manihot esculenta HOM05D005754 ORTHO05D006843 4.9e-78 295.0 295 58.3
PSO801G0209 Papaver somniferum HOM05D005754 ORTHO05D006843 8.4e-78 294.3 295 57.3
TWI74G1242 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 1.1e-77 293.9 288 58.7
Prupe.7G012900 Prunus persica HOM05D005754 ORTHO05D006843 3.2e-77 292.4 295 58.6
Gohir.A09G227000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 4.2e-77 292.0 295 57.6
ClCG01G009960 Citrullus lanatus HOM05D005754 ORTHO05D006843 5.5e-77 291.6 295 56.9
FvH4_2g14913 Fragaria vesca HOM05D005754 ORTHO05D006843 1.2e-76 290.4 289 60.2
TAR633G0926 Trochodendron aralioides HOM05D005754 ORTHO05D006843 1.2e-76 290.4 300 57.7
Prupe.8G016600 Prunus persica HOM05D005754 ORTHO05D006843 1.6e-76 290.0 295 59.0
TWI53G2110 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 2.1e-76 289.7 286 58.7
Nitab4.5_0006933g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 3.5e-76 288.9 295 54.6
Atru.chr10.361 Acer truncatum HOM05D005754 ORTHO05D006843 2.3e-75 286.2 281 58.7
RcHm_v2.0_Chr6g0277521 Rosa chinensis HOM05D005754 ORTHO05D006843 2.3e-75 286.2 286 60.1
MELO3C021702.2 Cucumis melo HOM05D005754 ORTHO05D006843 3.0e-75 285.8 295 55.9
MD12G1011000 Malus domestica HOM05D005754 ORTHO05D006843 3.9e-75 285.4 295 58.0
PSO339G5576 Papaver somniferum HOM05D005754 ORTHO05D006843 3.9e-75 285.4 295 56.6
THA.LOC104798565 Tarenaya hassleriana HOM05D005754 ORTHO05D006843 8.7e-75 284.3 296 56.8
Aqoxy2G00957 Aquilegia oxysepala HOM05D005754 ORTHO05D006843 1.9e-74 283.1 295 55.9
Nitab4.5_0006976g0040 Nicotiana tabacum HOM05D005754 ORTHO05D006843 2.5e-74 282.7 295 53.9
PGR142G3917 Punica granatum HOM05D005754 ORTHO05D006843 2.5e-74 282.7 288 55.9
SalBow5G0150 Salvia bowleyana HOM05D005754 ORTHO05D006843 2.5e-74 282.7 295 54.2
MSTRG.26599 Avicennia marina HOM05D005754 ORTHO05D006843 3.3e-74 282.3 295 54.9
RcHm_v2.0_Chr3g0496061 Rosa chinensis HOM05D005754 ORTHO05D006843 4.3e-74 282.0 295 55.3
CSS0030019 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 5.7e-74 281.6 295 55.9
FvH4_1g22930 Fragaria vesca HOM05D005754 ORTHO05D006843 5.7e-74 281.6 291 58.1
Sed0006244 Sechium edule HOM05D005754 ORTHO05D006843 7.4e-74 281.2 295 55.6
Aa31LG9G16220 Aethionema arabicum HOM05D005754 ORTHO05D006843 1.3e-73 280.4 296 56.1
Rhsim02G0117500 Rhododendron simsii HOM05D005754 ORTHO05D006843 1.3e-73 280.4 295 54.2
Rhsim08G0028000 Rhododendron simsii HOM05D005754 ORTHO05D006843 1.6e-73 280.0 295 54.6
vmacro03555 Vaccinium macrocarpon HOM05D005754 ORTHO05D006843 1.6e-73 280.0 295 54.2
CARHR129140 Cardamine hirsuta HOM05D005754 ORTHO05D006843 3.7e-73 278.9 296 56.1
Oeu063995.1 Olea europaea HOM05D005754 ORTHO05D006843 3.7e-73 278.9 295 54.6
Sopen02g026230 Solanum pennellii HOM05D005754 ORTHO05D006843 3.7e-73 278.9 295 53.2
PGSC0003DMG400017743 Solanum tuberosum HOM05D005754 ORTHO05D006843 3.7e-73 278.9 295 53.2
CAN.G809.72 Capsicum annuum HOM05D005754 ORTHO05D006843 8.2e-73 277.7 295 53.2
Solyc02g081610.3 Solanum lycopersicum HOM05D005754 ORTHO05D006843 8.2e-73 277.7 295 52.9
BraA05t20016Z Brassica rapa HOM05D005754 ORTHO05D006843 1.1e-72 277.3 306 54.2
FAN24G3472 Fragaria x ananassa HOM05D005754 ORTHO05D006843 1.1e-72 277.3 289 58.1
FAN28G1898 Fragaria x ananassa HOM05D005754 ORTHO05D006843 2.4e-72 276.2 295 54.9
PGSC0003DMG400024410 Solanum tuberosum HOM05D005754 ORTHO05D006843 2.4e-72 276.2 295 52.9
Thhalv10016993m.g Eutrema salsugineum HOM05D005754 ORTHO05D006843 4.1e-72 275.4 296 55.4
Lj3g0027197 Lotus japonicus HOM05D005754 ORTHO05D006843 1.2e-71 273.9 296 55.4
AT2G34980 Arabidopsis thaliana HOM05D005754 ORTHO05D006843 1.5e-71 273.5 296 54.4
Cc09_g05360 Coffea canephora HOM05D005754 ORTHO05D006843 2.6e-71 272.7 291 53.3
C04p13810 Brassica napus HOM05D005754 ORTHO05D006843 3.4e-71 272.3 299 55.2
BcaB02g09492 Brassica carinata HOM05D005754 ORTHO05D006843 5.9e-71 271.6 301 54.8
BolC4t22971H Brassica oleracea HOM05D005754 ORTHO05D006843 5.9e-71 271.6 301 54.8
DCAR_002228 Daucus carota HOM05D005754 ORTHO05D006843 5.0e-70 268.5 295 53.2
A05p10720 Brassica napus HOM05D005754 ORTHO05D006843 1.1e-69 267.3 299 53.5
Migut.H00867 Erythranthe guttata HOM05D005754 ORTHO05D006843 2.5e-69 266.2 275 55.6
BcaB02g09491 Brassica carinata HOM05D005754 ORTHO05D006843 9.3e-69 264.2 297 53.9
Os02g0622200 Oryza sativa ssp. japonica HOM05D005754 ORTHO05D006843 2.7e-68 262.7 284 53.5
ATR0618G331 Amborella trichopoda HOM05D005754 ORTHO05D006843 6.1e-68 261.5 286 53.5
Sc15g0000060 Simmondsia chinensis HOM05D005754 ORTHO05D006843 1.0e-67 260.8 295 51.2
BcaC02g07743 Brassica carinata HOM05D004145 ORTHO05D006843 1.3e-67 260.4 298 53.0
FAN19G0110 Fragaria x ananassa HOM05D005754 ORTHO05D006843 3.9e-67 258.8 272 58.5
Lsat_1_v5_gn_5_184141 Lactuca sativa HOM05D005754 ORTHO05D006843 6.7e-67 258.1 297 52.2
unitig_747.g21312 Utricularia gibba HOM05D005754 ORTHO05D006843 1.1e-66 257.3 295 50.2
Zm00001eb185080 Zea mays HOM05D005754 ORTHO05D006843 1.9e-66 256.5 280 53.6
HanXRQChr04g0115041 Helianthus annuus HOM05D005754 ORTHO05D006843 4.3e-66 255.4 272 55.9
HPP92_025694 Vanilla planifolia HOM05D005754 ORTHO05D006843 7.4e-66 254.6 253 57.7
SGA_v2.0_scaffold184G40027 Striga asiatica HOM05D005754 ORTHO05D006843 6.3e-65 251.5 288 51.0
Lj2P343T23 Lonicera japonica HOM05D005754 ORTHO05D006843 1.8e-64 250.0 272 56.2
Carub.0004s1667 Capsella rubella HOM05D005754 ORTHO05D006843 1.2e-63 247.3 296 51.4
AL4G30990 Arabidopsis lyrata HOM05D005754 ORTHO05D006843 2.6e-63 246.1 296 51.4
EL10Ac9g21106 Beta vulgaris HOM05D005754 ORTHO05D006843 2.9e-62 242.7 291 49.1
Dinv31187 Davidia involucrata HOM05D005754 ORTHO05D006843 3.8e-62 242.3 295 50.5
SHI51133 Sapria himalayana HOM05D005754 ORTHO05D006843 5.0e-62 241.9 291 49.8
Eucgr.G02638 Eucalyptus grandis HOM05D005754 ORTHO05D006843 5.5e-61 238.4 289 50.9
FAN26G0490 Fragaria x ananassa HOM05D005754 ORTHO05D006843 2.1e-60 236.5 272 55.1
Ah.01g016960 Amaranthus hybridus HOM05D005754 ORTHO05D006843 2.7e-60 236.1 285 49.8
AUR62038334 Chenopodium quinoa HOM05D005754 ORTHO05D006843 7.9e-60 234.6 289 48.8
SEGI_24883 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 1.8e-56 223.4 293 44.7
Lsat_1_v5_gn_2_60361 Lactuca sativa HOM05D005754 ORTHO05D006843 4.5e-55 218.8 276 50.0
Phvul.011G022000 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 7.7e-55 218.0 217 58.1
SHI47983 Sapria himalayana HOM05D005754 ORTHO05D006843 1.4e-53 213.8 280 48.2
AUR62023912 Chenopodium quinoa HOM05D005754 ORTHO05D006843 1.0e-51 207.6 272 47.1
Phvul.011G021750 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 8.8e-51 204.5 124 85.5
ClCG01G008540 Citrullus lanatus HOM05D005754 ORTHO05D006843 1.8e-48 196.8 215 54.4
GSVIVG01012143001 Vitis vinifera HOM05D005754 ORTHO05D006843 8.5e-46 188.0 124 81.5
Pp3c1_31960 Physcomitrium patens HOM05D005754 ORTHO05D006843 9.4e-45 184.5 300 39.3
Peaxi162Scf00048g00146 Petunia axillaris HOM05D005754 ORTHO05D006843 2.8e-41 172.9 143 62.9
Psat4g130160 Pisum sativum HOM05D005754 ORTHO05D006843 8.2e-41 171.4 229 47.2
Psat4g130000 Pisum sativum HOM05D005754 ORTHO05D006843 7.0e-40 168.3 197 52.8
ECA238G2846 Erigeron canadensis HOM05D005754 ORTHO05D006843 4.0e-35 152.5 217 46.1
AagrBONN_evm.TU.Sc2ySwM_368.2727 Anthoceros agrestis HOM05D005754 ORTHO05D006843 5.2e-35 152.1 287 35.9
FAN27G3249 Fragaria x ananassa HOM05D005754 ORTHO05D006843 3.4e-34 149.4 200 49.0
SMO174G0201 Selaginella moellendorffii HOM05D005754 ORTHO05D006843 2.2e-30 136.7 280 35.4
Nitab4.5_0011913g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 1.9e-29 133.7 91 70.3
Sp2g07050 Schrenkiella parvula HOM05D005754 ORTHO05D006843 7.2e-29 131.7 91 72.5
Mapoly0096s0067 Marchantia polymorpha HOM05D005754 ORTHO05D006843 1.2e-28 131.0 336 32.4
Atru.chr10.357 Acer truncatum HOM05D005754 ORTHO05D006843 1.4e-27 127.5 77 77.9
CSS0033773 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 6.8e-27 125.2 223 41.7
CARHR278340 Cardamine hirsuta HOM05D005754 ORTHO05D006843 7.0e-24 115.2 86 70.9
SEGI_06024 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 3.8e-22 109.4 80 61.2
AUR62040653 Chenopodium quinoa HOM05D002008 ORTHO05D006843 8.6e-22 108.2 195 39.5
CBR_g21245 Chara braunii HOM05D005754 ORTHO05D006843 2.1e-20 103.6 110 47.3
Medtr3g464840 Medicago truncatula HOM05D000092 ORTHO05D005910 1.4e-19 100.9 117 55.6
TPR.G29739 Trifolium pratense HOM05D005754 ORTHO05D006843 4.6e-15 85.9 54 83.3
Hund00745 Selenicereus undatus HOM05D005754 ORTHO05D006843 3.0e-14 83.2 48 79.2
CsaV3_1G018460 Cucumis sativus L. HOM05D001859 ORTHO05D001836 5.0e-14 82.4 150 39.3
BcaC02g11579 Brassica carinata HOM05D005754 ORTHO05D006843 4.3e-13 79.3 51 78.4
Psat7g123440 Pisum sativum HOM05D005754 ORTHO05D006843 4.4e-10 69.3 50 76.0
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 2.9e-09 66.6 54 68.5
Cfa024382 Carpinus fangiana HOM05D005754 ORTHO05D006843 7.8e-07 58.5 130 35.4
Cre02.g109850 Chlamydomonas reinhardtii HOM05D005754 ORTHO05D006843 7.8e-07 58.5 114 33.3
MCO15G034 Micromonas commoda HOM05D005754 ORTHO05D006843 8.6e-06 55.1 294 23.8


User provided reference genes

Program Settings