Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p000079 Quercus lobata HOM05D004456 ORTHO05D005287 4.1e-40 167.5 81 100.0
CiPaw.01G092700 Carya illinoinensis HOM05D004456 ORTHO05D005287 5.7e-26 120.6 64 90.6
MSTRG.14797 Avicennia marina HOM05D004456 ORTHO05D005287 1.7e-25 119.0 63 92.1
HPP92_025894 Vanilla planifolia HOM05D004456 ORTHO05D005287 1.7e-25 119.0 63 92.1
Manes.03G095700 Manihot esculenta HOM05D004456 ORTHO05D005287 2.2e-25 118.6 63 92.1
Duzib235G0097 Durio zibethinus HOM05D004456 ORTHO05D005287 2.9e-25 118.2 63 92.1
Gohir.D11G338800 Gossypium hirsutum HOM05D004456 ORTHO05D005287 2.9e-25 118.2 63 92.1
Gorai.007G368500 Gossypium raimondii HOM05D004456 ORTHO05D005287 2.9e-25 118.2 63 92.1
Cpa.g.sc4.119 Carica papaya HOM05D004456 ORTHO05D005287 3.7e-25 117.9 63 90.5
FvH4_3g14110 Fragaria vesca HOM05D004456 ORTHO05D005287 3.7e-25 117.9 63 90.5
FAN11G1980 Fragaria x ananassa HOM05D004456 ORTHO05D005287 3.7e-25 117.9 63 90.5
FAN16G3308 Fragaria x ananassa HOM05D004456 ORTHO05D005287 3.7e-25 117.9 63 90.5
FAN21G1444 Fragaria x ananassa HOM05D004456 ORTHO05D005287 3.7e-25 117.9 63 90.5
FAN25G2185 Fragaria x ananassa HOM05D004456 ORTHO05D005287 3.7e-25 117.9 63 90.5
Nitab4.5_0001225g0030 Nicotiana tabacum HOM05D004456 ORTHO05D005287 3.7e-25 117.9 63 90.5
Nitab4.5_0004615g0060 Nicotiana tabacum HOM05D004456 ORTHO05D005287 3.7e-25 117.9 63 90.5
RcHm_v2.0_Chr5g0023421 Rosa chinensis HOM05D004456 ORTHO05D005287 3.7e-25 117.9 63 90.5
arahy.Tifrunner.gnm1.ann1.PTU9AS Arachis hypogaea HOM05D004456 ORTHO05D005287 4.9e-25 117.5 63 90.5
arahy.Tifrunner.gnm1.ann1.VAHF8H Arachis hypogaea HOM05D004456 ORTHO05D005287 4.9e-25 117.5 63 90.5
CANSAT35G0656 Cannabis sativa HOM05D004456 ORTHO05D005287 4.9e-25 117.5 63 90.5
CANSAT56G2838 Cannabis sativa HOM05D004456 ORTHO05D005287 4.9e-25 117.5 63 90.5
CBR_g49054 Chara braunii HOM05D004456 ORTHO05D005287 4.9e-25 117.5 66 84.8
ClCG02G018700 Citrullus lanatus HOM05D004456 ORTHO05D005287 4.9e-25 117.5 63 90.5
MELO3C019631.2 Cucumis melo HOM05D004456 ORTHO05D005287 4.9e-25 117.5 63 90.5
CsaV3_6G013470 Cucumis sativus L. HOM05D004456 ORTHO05D005287 4.9e-25 117.5 63 90.5
Lalb_Chr04g0249811 Lupinus albus HOM05D004456 ORTHO05D005287 4.9e-25 117.5 63 90.5
Lalb_Chr10g0105771 Lupinus albus HOM05D004456 ORTHO05D005287 4.9e-25 117.5 63 90.5
Phvul.009G196700 Phaseolus vulgaris HOM05D004456 ORTHO05D005287 4.9e-25 117.5 63 90.5
Sabra17G0098500 Salix brachista HOM05D004456 ORTHO05D005287 4.9e-25 117.5 63 90.5
Sed0012483 Sechium edule HOM05D004456 ORTHO05D005287 4.9e-25 117.5 63 90.5
Glyma.02G272000 Glycine max HOM05D004456 ORTHO05D005287 6.4e-25 117.1 63 90.5
Medtr0027s0250 Medicago truncatula HOM05D004456 ORTHO05D005287 6.4e-25 117.1 63 90.5
Medtr5g087380 Medicago truncatula HOM05D004456 ORTHO05D005287 6.4e-25 117.1 63 90.5
Thecc.06G049600 Theobroma cacao HOM05D004456 ORTHO05D005287 6.4e-25 117.1 63 90.5
Ciclev10029584m.g Citrus clementina HOM05D004456 ORTHO05D005287 8.3e-25 116.7 63 90.5
Haze_16244 Corylus avellana HOM05D004456 ORTHO05D005287 8.3e-25 116.7 63 88.9
Potri.017G119300 Populus trichocarpa HOM05D004456 ORTHO05D005287 8.3e-25 116.7 63 90.5
SalBow7G3040 Salvia bowleyana HOM05D004456 ORTHO05D005287 8.3e-25 116.7 63 88.9
TWI60G0757 Tripterygium wilfordii HOM05D004456 ORTHO05D005287 8.3e-25 116.7 81 75.3
ATR0618G343 Amborella trichopoda HOM05D004456 ORTHO05D005287 1.1e-24 116.3 63 88.9
CAN.G79.42 Capsicum annuum HOM05D004456 ORTHO05D005287 1.1e-24 116.3 63 88.9
LjContig00564g0013918 Lotus japonicus HOM05D004456 ORTHO05D005287 1.1e-24 116.3 63 88.9
MBI03_g42617_MAGBIO Magnolia biondii HOM05D004456 ORTHO05D005287 1.1e-24 116.3 63 88.9
Solyc02g069840.3 Solanum lycopersicum HOM05D004456 ORTHO05D005287 1.1e-24 116.3 63 88.9
Sopen02g019000 Solanum pennellii HOM05D004456 ORTHO05D005287 1.1e-24 116.3 63 88.9
PGSC0003DMG400021190 Solanum tuberosum HOM05D004456 ORTHO05D005287 1.1e-24 116.3 63 88.9
TAR374G0177 Trochodendron aralioides HOM05D004456 ORTHO05D005287 1.1e-24 116.3 63 88.9
TAR622G1262 Trochodendron aralioides HOM05D004456 ORTHO05D005287 1.1e-24 116.3 63 88.9
Atru.chr8.947 Acer truncatum HOM05D004456 ORTHO05D005287 1.4e-24 115.9 63 90.5
Gohir.A11G319600 Gossypium hirsutum HOM05D004456 ORTHO05D005287 1.4e-24 115.9 63 90.5
Nn7g36646 Nelumbo nucifera HOM05D004456 ORTHO05D005287 1.4e-24 115.9 62 90.3
Sed0010742 Sechium edule HOM05D004456 ORTHO05D005287 1.4e-24 115.9 63 88.9
Hund17691 Selenicereus undatus HOM05D004456 ORTHO05D005287 1.4e-24 115.9 63 87.3
Hma1.2p1_0333F.1_g128240 Hydrangea macrophylla HOM05D004456 ORTHO05D005287 1.8e-24 115.5 63 88.9
Nn1g08913 Nelumbo nucifera HOM05D004456 ORTHO05D005287 1.8e-24 115.5 79 75.9
Oeu015180.1 Olea europaea HOM05D004456 ORTHO05D005287 1.8e-24 115.5 63 88.9
Oeu041103.1 Olea europaea HOM05D004456 ORTHO05D005287 1.8e-24 115.5 63 88.9
TWI81G0537 Tripterygium wilfordii HOM05D004456 ORTHO05D005287 1.8e-24 115.5 63 88.9
VMungo1309G1322 Vigna mungo HOM05D004456 ORTHO05D005287 1.8e-24 115.5 63 88.9
Ca_06131_v3 Cicer arietinum L. HOM05D004456 ORTHO05D005287 2.4e-24 115.2 63 88.9
Cc09_g08010 Coffea canephora HOM05D004456 ORTHO05D005287 2.4e-24 115.2 63 87.3
Psat2g023600 Pisum sativum HOM05D004456 ORTHO05D005287 2.4e-24 115.2 63 88.9
SGA_v2.0_scaffold223G42863 Striga asiatica HOM05D004456 ORTHO05D005287 2.4e-24 115.2 63 87.3
THA.LOC104812342 Tarenaya hassleriana HOM05D004456 ORTHO05D005287 2.4e-24 115.2 63 88.9
AUR62000936 Chenopodium quinoa HOM05D004456 ORTHO05D005287 3.2e-24 114.8 70 80.0
AUR62005032 Chenopodium quinoa HOM05D004456 ORTHO05D005287 3.2e-24 114.8 70 80.0
Prupe.1G563700 Prunus persica HOM05D004456 ORTHO05D005287 3.2e-24 114.8 63 88.9
Prupe.4G128400 Prunus persica HOM05D004456 ORTHO05D005287 3.2e-24 114.8 63 88.9
EL10Ac1g00574 Beta vulgaris HOM05D004456 ORTHO05D005287 4.1e-24 114.4 70 80.0
CSS0000388 Camellia sinensis var. sinensis HOM05D004456 ORTHO05D005287 4.1e-24 114.4 63 88.9
Nitab4.5_0008405g0010 Nicotiana tabacum HOM05D004456 ORTHO05D005287 4.1e-24 114.4 63 90.5
Rhsim05G0148000 Rhododendron simsii HOM05D004456 ORTHO05D005287 4.1e-24 114.4 63 88.9
SHI24418 Sapria himalayana HOM05D004456 ORTHO05D005287 4.1e-24 114.4 65 84.6
Dinv05126 Davidia involucrata HOM05D004456 ORTHO05D005287 5.4e-24 114.0 63 88.9
CDE04G1757 Ceratophyllum demersum HOM05D004456 ORTHO05D005287 7.0e-24 113.6 63 87.3
CDE08G1311 Ceratophyllum demersum HOM05D004456 ORTHO05D005287 7.0e-24 113.6 63 87.3
COL.COLO4_26811 Corchorus olitorius HOM05D004456 ORTHO05D005287 7.0e-24 113.6 63 87.3
unitig_37.g12076 Utricularia gibba HOM05D004456 ORTHO05D005287 7.0e-24 113.6 63 85.7
unitig_92.g28171 Utricularia gibba HOM05D004456 ORTHO05D005287 7.0e-24 113.6 63 85.7
Zm00001eb353650 Zea mays HOM05D004456 ORTHO05D005287 7.0e-24 113.6 63 87.3
Aa31LG7G1200 Aethionema arabicum HOM05D004456 ORTHO05D005287 9.2e-24 113.2 63 87.3
Os05g0528200 Oryza sativa ssp. japonica HOM05D004456 ORTHO05D005287 9.2e-24 113.2 63 87.3
TPR.G29918 Trifolium pratense HOM05D004456 ORTHO05D005287 9.2e-24 113.2 63 85.7
Actinidia13485 Actinidia chinensis HOM05D004456 ORTHO05D005287 1.2e-23 112.8 63 87.3
EL10Ac4g09241 Beta vulgaris HOM05D004456 ORTHO05D005287 1.2e-23 112.8 70 78.6
Eucgr.B03760 Eucalyptus grandis HOM05D004456 ORTHO05D005287 1.2e-23 112.8 63 87.3
ECA246G0212 Erigeron canadensis HOM05D004456 ORTHO05D005287 1.6e-23 112.5 63 85.7
HanXRQChr03g0087831 Helianthus annuus HOM05D004456 ORTHO05D005287 1.6e-23 112.5 63 85.7
HanXRQChr17g0543051 Helianthus annuus HOM05D004456 ORTHO05D005287 1.6e-23 112.5 63 85.7
Lsat_1_v5_gn_1_42081 Lactuca sativa HOM05D004456 ORTHO05D005287 1.6e-23 112.5 63 85.7
Lsat_1_v5_gn_4_69821 Lactuca sativa HOM05D004456 ORTHO05D005287 1.6e-23 112.5 63 85.7
Sc17g0004630 Simmondsia chinensis HOM05D004456 ORTHO05D005287 1.6e-23 112.5 63 85.7
GSVIVG01015827001 Vitis vinifera HOM05D004456 ORTHO05D005287 1.6e-23 112.5 63 85.7
Aqoxy3G00192 Aquilegia oxysepala HOM05D004456 ORTHO05D005287 2.0e-23 112.1 63 85.7
MD10G1216300 Malus domestica HOM05D004456 ORTHO05D005287 2.0e-23 112.1 63 87.3
vmacro03391 Vaccinium macrocarpon HOM05D004456 ORTHO05D005287 2.0e-23 112.1 63 87.3
vmacro03444 Vaccinium macrocarpon HOM05D004456 ORTHO05D005287 2.0e-23 112.1 63 87.3
AL1G28910 Arabidopsis lyrata HOM05D004456 ORTHO05D005287 2.7e-23 111.7 63 85.7
AT1G16740 Arabidopsis thaliana HOM05D004456 ORTHO05D005287 2.7e-23 111.7 63 85.7
BcaB02g06679 Brassica carinata HOM05D004456 ORTHO05D005287 2.7e-23 111.7 63 85.7
BcaB03g13034 Brassica carinata HOM05D004456 ORTHO05D005287 2.7e-23 111.7 63 85.7
BcaC07g38811 Brassica carinata HOM05D004456 ORTHO05D005287 2.7e-23 111.7 63 85.7
A06p12700 Brassica napus HOM05D004456 ORTHO05D005287 2.7e-23 111.7 63 85.7
A08p31300 Brassica napus HOM05D004456 ORTHO05D005287 2.7e-23 111.7 63 85.7
C05p15000 Brassica napus HOM05D004456 ORTHO05D005287 2.7e-23 111.7 63 85.7
C08p17530 Brassica napus HOM05D004456 ORTHO05D005287 2.7e-23 111.7 63 85.7
BolC5t30215H Brassica oleracea HOM05D004456 ORTHO05D005287 2.7e-23 111.7 63 85.7
BolC8t49379H Brassica oleracea HOM05D004456 ORTHO05D005287 2.7e-23 111.7 63 85.7
BraA06t24430Z Brassica rapa HOM05D004456 ORTHO05D005287 2.7e-23 111.7 63 85.7
BraA08t35053Z Brassica rapa HOM05D004456 ORTHO05D005287 2.7e-23 111.7 63 85.7
Carub.0001s1648 Capsella rubella HOM05D004456 ORTHO05D005287 2.7e-23 111.7 63 85.7
CARHR017200 Cardamine hirsuta HOM05D004456 ORTHO05D005287 2.7e-23 111.7 63 85.7
Thhalv10009114m.g Eutrema salsugineum HOM05D004456 ORTHO05D005287 2.7e-23 111.7 63 85.7
Os01g0734100 Oryza sativa ssp. japonica HOM05D004456 ORTHO05D005287 2.7e-23 111.7 63 85.7
Sp1g14890 Schrenkiella parvula HOM05D004456 ORTHO05D005287 2.7e-23 111.7 63 85.7
SMO358G0062 Selaginella moellendorffii HOM05D004456 ORTHO05D005287 2.7e-23 111.7 66 83.3
Migut.M01892 Erythranthe guttata HOM05D004456 ORTHO05D005287 3.5e-23 111.3 63 84.1
Migut.M01926 Erythranthe guttata HOM05D004456 ORTHO05D005287 3.5e-23 111.3 63 84.1
Pp3c20_1830 Physcomitrium patens HOM05D004456 ORTHO05D005287 4.6e-23 110.9 63 84.1
Mapoly0002s0127 Marchantia polymorpha HOM05D004456 ORTHO05D005287 5.9e-23 110.5 63 85.7
Ah.06g192000 Amaranthus hybridus HOM05D004456 ORTHO05D005287 7.8e-23 110.2 63 82.5
PGR142G0549 Punica granatum HOM05D004456 ORTHO05D005287 7.8e-23 110.2 63 84.1
PGR142G0749 Punica granatum HOM05D004456 ORTHO05D005287 7.8e-23 110.2 63 84.1
PGR142G2466 Punica granatum HOM05D004456 ORTHO05D005287 7.8e-23 110.2 63 84.1
PSO339G5129 Papaver somniferum HOM05D004456 ORTHO05D005287 1.0e-22 109.8 63 84.1
PSO384G3508 Papaver somniferum HOM05D004456 ORTHO05D005287 1.0e-22 109.8 63 84.1
DCAR_003856 Daucus carota HOM05D004456 ORTHO05D005287 2.3e-22 108.6 63 82.5
AagrBONN_evm.TU.Sc2ySwM_228.5758 Anthoceros agrestis HOM05D004456 ORTHO05D005287 6.6e-22 107.1 69 75.4
EL10Ac9g22335 Beta vulgaris HOM05D004456 ORTHO05D005287 8.6e-22 106.7 62 82.3
PGR073G0004 Punica granatum HOM05D004456 ORTHO05D005287 1.5e-21 105.9 63 81.0
PGR073G0005 Punica granatum HOM05D004456 ORTHO05D005287 1.5e-21 105.9 63 81.0
PGR073G0006 Punica granatum HOM05D004456 ORTHO05D005287 1.5e-21 105.9 63 81.0
PGR142G2683 Punica granatum HOM05D004456 ORTHO05D005287 1.9e-21 105.5 63 81.0
PGR073G0001 Punica granatum HOM05D004456 ORTHO05D005287 2.5e-21 105.1 63 81.0
PGR142G1158 Punica granatum HOM05D004456 ORTHO05D005287 2.5e-21 105.1 63 81.0
PGR142G3851 Punica granatum HOM05D004456 ORTHO05D005287 2.5e-21 105.1 63 81.0
PGR087G0002 Punica granatum HOM05D004456 ORTHO05D005287 3.3e-21 104.8 63 79.4
PGR087G0004 Punica granatum HOM05D004456 ORTHO05D005287 3.3e-21 104.8 63 79.4
PGR142G0123 Punica granatum HOM05D004456 ORTHO05D005287 1.2e-20 102.8 61 80.3
PGR142G2513 Punica granatum HOM05D004456 ORTHO05D005287 2.1e-20 102.1 63 76.2
MCO12G023 Micromonas commoda HOM05D004456 ORTHO05D005287 1.4e-19 99.4 63 76.2
PGR142G0707 Punica granatum HOM05D004456 ORTHO05D005287 1.4e-19 99.4 63 74.6
PGR142G2293 Punica granatum HOM05D004456 ORTHO05D005287 1.4e-19 99.4 63 74.6
PRCOL_00003603 Prasinoderma coloniale HOM05D004456 ORTHO05D005287 6.8e-19 97.1 63 69.8
PGR142G2495 Punica granatum HOM05D004456 ORTHO05D005287 6.8e-19 97.1 63 77.8
AagrBONN_evm.TU.Sc2ySwM_368.929 Anthoceros agrestis HOM05D004456 ORTHO05D005287 2.0e-15 85.5 57 71.9
Cre01.g052350 Chlamydomonas reinhardtii HOM05D004456 ORTHO05D005287 2.5e-13 78.6 64 57.8
SMO198G0083 Selaginella moellendorffii HOM05D004456 ORTHO05D005287 1.4e-11 72.8 61 63.9
SMO244G0037 Selaginella moellendorffii HOM05D004456 ORTHO05D005287 1.4e-11 72.8 61 63.9
SMO281G0018 Selaginella moellendorffii HOM05D004456 ORTHO05D005287 1.4e-11 72.8 61 63.9
Peaxi162Scf00267g00035 Petunia axillaris HOM05D004456 ORTHO05D005287 2.3e-11 72.0 42 85.7
EL10Ac8g19693 Beta vulgaris HOM05D004456 ORTHO05D005287 3.7e-09 64.7 39 79.5
EL10Ac8g19560 Beta vulgaris HOM05D004456 ORTHO05D005287 1.6e-07 59.3 30 90.0


User provided reference genes

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